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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 2034 fasta sequence
[TTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC-TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT-GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG-CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAACGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGTCTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTTGAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA-AGAA-AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG]
[+] EMBL AK070062 [TTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAACGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGTCTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTTGAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTATGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AG ]
[+] EMBL CB638221 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGT ]
[+] EMBL CB638192 [ AGA CAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTG ]
[+] EMBL CB638161 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGTGGGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACT ]
[+] EMBL CB638248 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGGCCCGAAA GGTCTACCTAAACAGTCTGTCACT ]
[+] EMBL CB638160 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGA ]
[+] EMBL CB638220 [ CCTCACTACACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAATAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGCGGGATTTTGGCTCCAGCTGCTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTCCTTGTCCTGACCTGGGGAATCTCCGGCAGT G ]
[+] EMBL CB638159 [ TGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTGCGATTCCCTGCTCGCCCATAATTATTCCTTTTTTTCTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTGTTCTTTCATCTCTGTGGGATTCTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGACTACTGGTCTGCTTTTCTCGTCCTGACCTGAGGAATCTCGGGTAGC GGGGGATGGCC ]
[+] EMBL CB638199 [ TGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAAGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAAC ]
[+] EMBL CB638194 [ ATGGCGGGCTGATCGTCTTGCGGACAAGGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAAC ]
[+] EMBL AU065662 [ AAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCNGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCT ]
[+] EMBL AK059626 [ GGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCCACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTG ]
[+] EMBL AU030289 [ CTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGC CTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCNGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCNGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCNGTAACAGTGCTTGGTTCAACTTCAGTTCAGNGTGGTCTGGTGATGATAA AGAA AATCATTCNGAAAaaaaaaaa ]
[-] EMBL CB638162 [ GATCCAAACACTCGTGTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTTTCTAGCTCTTCTTTTTTCGCAGTTTTTTTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAAAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAAAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATATATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATA ]
[-] EMBL CB638222 [ CTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGTTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG]
[-] EMBL CB638193 [ CTTCCTCCTCTTTTCAACTTCAGAACACAAGAGTTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCAAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCAAGAGTTGTTGTTGTTGTTGTTCATGGCAGAATGTAATGTGAGTGAGGTTGGAGAAGAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTTTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG]
[-] EMBL CB639015 [ CTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG]
[-] EMBL CB638249 [ ACACAAGAGTTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTAATGTGAGTGAGGTTGGAGAAGAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATAT ]
[+] EMBL BQ906609 [ ccgcgGAACGCGTGG CGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGTAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGC TTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTCCAGTAACAGTGCTTGGTTCAAC TTCAGAGCGGTCTGGTGATGAAAANNCAACAATCATTCAGAAAGTTTTGTTTtaaaaa ]
consensusID : consensus_15259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCGCCAAATTTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTTGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCGGTAACAGTGCTTGGTTCAACTTCAGAGCGGTCTGGTGATGAAAAGAAAATCATTCAGAAAAAAAAAAAAAAAA]
[-] EMBL CA762020 [ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCGCCAAATTTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTTGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCGGTAACAGTGCTTGGTTCAACTTCAGAGCGGTCTGGTGATGAAAAGAAAATCATTCAGAAAAAAAAAAAAAAAA]
consensusID : consensus_15259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[GAGGCCGAGACAAGGGGGTAGTGGGTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCGGAGTTGTTGTTGTTGTTGTTCATGGCCGGATTTGATGTGAGTGAGGTTGGAAAAAAAAAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATTTATGCTTCAGGGTTCCCGGCTGTGTAACTCCTCCAGTTTTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCCAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761315 [GAGGCCGAGACAAGGGGGTAGTGGGTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCGGAGTTGTTGTTGTTGTTGTTCATGGCCGGATTTGATGTGAGTGAGGTTGGAAAAAAAAAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATTTATGCTTCAGGGTTCCCGGCTGTGTAACTCCTCCAGTTTTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCCAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15259#0 TTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCAC 60
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 TCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCT 120
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTG 180
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 TTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTT 240
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTCTGCAAGCAATG 300
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGTGGGGGATG 360
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTC 420
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 AAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGG 480
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCT 540
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 AGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGGCCGAAATGGTCTACCTAAA 600
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATAT 660
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAA 720
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGT 780
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTT 840
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGG 900
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATA 960
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCA 1020
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAG 1080
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCA 1140
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 ACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTG 1200
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAG 1260
consensus_15259#1 ------------------------------------------------------------
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTC 1320
consensus_15259#1 ----------------------------------------------ACTACACGGAGTTC 14
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 AAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCT 1380
consensus_15259#1 AAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCT 74
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 GAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCT 1440
consensus_15259#1 GAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCGCCAAATTTTCGGTGCACCGCT 134
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 ATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCT 1500
consensus_15259#1 ATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTTGTCTACCT 194
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 AATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCT 1560
consensus_15259#1 AATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCT 254
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCG 1620
consensus_15259#1 CCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCG 314
consensus_15259#2 ------------------------------------------------------------
consensus_15259#0 CTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCT 1680
consensus_15259#1 CTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCT 374
consensus_15259#2 ----------------------------------------------------GAGGCCGA 8
** **
consensus_15259#0 G-TAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAG 1739
consensus_15259#1 G-TAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCAGAG 433
consensus_15259#2 GACAAGGGGGTAGTGGGTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCGGAG 68
* ** ** ******* ** *********************************** ***
consensus_15259#0 TTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCT 1799
consensus_15259#1 TTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCT 493
consensus_15259#2 TTGTTGTTGTTGTTGTTCATGGCCGGATTTGATGTGAGTGAGGTTGGAAAAAAAAAGGCT 128
*********************** **** ******************* ** ** *****
consensus_15259#0 TGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAG 1859
consensus_15259#1 TGTGCTT-GGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAG 552
consensus_15259#2 TGTGCTT-GGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATTTATGCTTCAGGGTTCCCG 187
******* ************* ******************* **************** *
consensus_15259#0 GCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGT 1919
consensus_15259#1 GCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCGGTAACAGT 612
consensus_15259#2 GCTGTGTAACTCCTCCAGTTTTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGT 247
******************** ****************************** ********
consensus_15259#0 GCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAAAGAAAATCATTCAGAAAGT 1979
consensus_15259#1 GCTTGGTTCAACTT-----CAGAGCGGTCTGGTGATGA-AAAGAAAATCATTCAGAAAAA 666
consensus_15259#2 GCTTGGTTCAACTTC----CAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA-- 301
************** ** * * *** **** * * ***
consensus_15259#0 TTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG 2034
consensus_15259#1 AAAAAAAAAAA-------------------------------------------- 677
consensus_15259#2 -------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||