These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 2034 fasta sequence [TTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC-TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT-GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG-CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAACGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGTCTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTTGAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA-AGAA-AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG] [+] EMBL AK070062 [TTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAACGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGTCTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTTGAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTATGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AG ] [+] EMBL CB638221 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGT ] [+] EMBL CB638192 [ AGA CAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTG ] [+] EMBL CB638161 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGTGGGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACT ] [+] EMBL CB638248 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGGCCCGAAA GGTCTACCTAAACAGTCTGTCACT ] [+] EMBL CB638160 [ AGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGA ] [+] EMBL CB638220 [ CCTCACTACACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAATAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGCGGGATTTTGGCTCCAGCTGCTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTCCTTGTCCTGACCTGGGGAATCTCCGGCAGT G ] [+] EMBL CB638159 [ TGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTGCGATTCCCTGCTCGCCCATAATTATTCCTTTTTTTCTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTGTTCTTTCATCTCTGTGGGATTCTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGACTACTGGTCTGCTTTTCTCGTCCTGACCTGAGGAATCTCGGGTAGC GGGGGATGGCC ] [+] EMBL CB638199 [ TGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTC TGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAAGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAAC ] [+] EMBL CB638194 [ ATGGCGGGCTGATCGTCTTGCGGACAAGGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGT GGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGG CCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAAC ] [+] EMBL AU065662 [ AAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCNGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCT ] [+] EMBL AK059626 [ GGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCCACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTG ] [+] EMBL AU030289 [ CTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGC CTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCNGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCNGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCNGTAACAGTGCTTGGTTCAACTTCAGTTCAGNGTGGTCTGGTGATGATAA AGAA AATCATTCNGAAAaaaaaaaa ] [-] EMBL CB638162 [ GATCCAAACACTCGTGTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTTTCTAGCTCTTCTTTTTTCGCAGTTTTTTTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAAAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAAAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATATATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATA ] [-] EMBL CB638222 [ CTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGTTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG] [-] EMBL CB638193 [ CTTCCTCCTCTTTTCAACTTCAGAACACAAGAGTTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCAAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCAAGAGTTGTTGTTGTTGTTGTTCATGGCAGAATGTAATGTGAGTGAGGTTGGAGAAGAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTTTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG] [-] EMBL CB639015 [ CTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG] [-] EMBL CB638249 [ ACACAAGAGTTAAATGGCATCCCTCCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTAATGTGAGTGAGGTTGGAGAAGAAAAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAA AGAA AATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATAT ] [+] EMBL BQ906609 [ ccgcgGAACGCGTGG CGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGTAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGC TTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTCCAGTAACAGTGCTTGGTTCAAC TTCAGAGCGGTCTGGTGATGAAAANNCAACAATCATTCAGAAAGTTTTGTTTtaaaaa ] consensusID : consensus_15259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCGCCAAATTTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTTGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCGGTAACAGTGCTTGGTTCAACTTCAGAGCGGTCTGGTGATGAAAAGAAAATCATTCAGAAAAAAAAAAAAAAAA] [-] EMBL CA762020 [ACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCGCCAAATTTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTTGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCGGTAACAGTGCTTGGTTCAACTTCAGAGCGGTCTGGTGATGAAAAGAAAATCATTCAGAAAAAAAAAAAAAAAA] consensusID : consensus_15259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GAGGCCGAGACAAGGGGGTAGTGGGTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCGGAGTTGTTGTTGTTGTTGTTCATGGCCGGATTTGATGTGAGTGAGGTTGGAAAAAAAAAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATTTATGCTTCAGGGTTCCCGGCTGTGTAACTCCTCCAGTTTTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCCAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761315 [GAGGCCGAGACAAGGGGGTAGTGGGTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCGGAGTTGTTGTTGTTGTTGTTCATGGCCGGATTTGATGTGAGTGAGGTTGGAAAAAAAAAGGCTTGTGCTTGGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATTTATGCTTCAGGGTTCCCGGCTGTGTAACTCCTCCAGTTTTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCCAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15259#0 TTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCAC 60 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 TCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCT 120 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTG 180 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 TTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTT 240 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTCTGCAAGCAATG 300 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGTGGGGGATG 360 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTC 420 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 AAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGG 480 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCT 540 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 AGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGGCCGAAATGGTCTACCTAAA 600 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATAT 660 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAA 720 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGT 780 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTT 840 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGG 900 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATA 960 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCA 1020 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAG 1080 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCA 1140 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 ACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTG 1200 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAG 1260 consensus_15259#1 ------------------------------------------------------------ consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTC 1320 consensus_15259#1 ----------------------------------------------ACTACACGGAGTTC 14 consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 AAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCT 1380 consensus_15259#1 AAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCT 74 consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 GAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCT 1440 consensus_15259#1 GAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCGCCAAATTTTCGGTGCACCGCT 134 consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 ATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCT 1500 consensus_15259#1 ATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTTGTCTACCT 194 consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 AATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCT 1560 consensus_15259#1 AATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCT 254 consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CCAGAAGCCATCGAACGTTTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCG 1620 consensus_15259#1 CCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCG 314 consensus_15259#2 ------------------------------------------------------------ consensus_15259#0 CTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCT 1680 consensus_15259#1 CTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCT 374 consensus_15259#2 ----------------------------------------------------GAGGCCGA 8 ** ** consensus_15259#0 G-TAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAG 1739 consensus_15259#1 G-TAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCAGAG 433 consensus_15259#2 GACAAGGGGGTAGTGGGTTTTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCCGGAG 68 * ** ** ******* ** *********************************** *** consensus_15259#0 TTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCT 1799 consensus_15259#1 TTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCT 493 consensus_15259#2 TTGTTGTTGTTGTTGTTCATGGCCGGATTTGATGTGAGTGAGGTTGGAAAAAAAAAGGCT 128 *********************** **** ******************* ** ** ***** consensus_15259#0 TGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAG 1859 consensus_15259#1 TGTGCTT-GGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAG 552 consensus_15259#2 TGTGCTT-GGTGTGCTTGTGCGGTTGGTTTGAGGTTGGAATTTATGCTTCAGGGTTCCCG 187 ******* ************* ******************* **************** * consensus_15259#0 GCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGT 1919 consensus_15259#1 GCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCGGTAACAGT 612 consensus_15259#2 GCTGTGTAACTCCTCCAGTTTTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGT 247 ******************** ****************************** ******** consensus_15259#0 GCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAAAGAAAATCATTCAGAAAGT 1979 consensus_15259#1 GCTTGGTTCAACTT-----CAGAGCGGTCTGGTGATGA-AAAGAAAATCATTCAGAAAAA 666 consensus_15259#2 GCTTGGTTCAACTTC----CAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA-- 301 ************** ** * * *** **** * * *** consensus_15259#0 TTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATG 2034 consensus_15259#1 AAAAAAAAAAA-------------------------------------------- 677 consensus_15259#2 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||