|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1338 fasta sequence
[TCTTCCTCCTCCTCCTCCACCCCCAAAT-CGCCTCGACGAGCGGCGCGGCGGCGAGGGCAGGAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACAGTGTGCACGGAGTGCGGCC-TCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCCAACGAGTCCAGCGACAACGACCCCGTCCGTGTCGGCGGCCCGACCAACCCGCTCCTCACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCAGGGGGAGTTCCTCTCCTCCTCCCTCGGCAGGTGGCAGAACCGCGGCTCCAACCCCGACCGCTCCCTCATCCTCGCCTTCCGCACCATCGCCAACATGGCCGACAGGTTAGGTCTTGTGGCTACAATCAAGGACCGAGCCAATGAAATATATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGAAGAAATCAAGATGCCATATTAGCTG-CCTGTTTGTATATTGCTTGTAGACAAGAGGATCGGCCTAGAACTGT-AAAAGAAATATGTTCGGTCGCTAATGGAGCAACAAAGAAAGAGATAGGCCGAGCAAAGGAA-TTTATCGTGAAGCAACTGGAAGTTG-AAATGGGTCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTT-CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA-GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA-TTGCGGCTGCTGTCATTTACATGATAACCCAACT-CTCAGATGATAAGAAGCCTCTGAAAGACATATCC--TTGGCTA-CTGGTGTGGCA-GAAGGTACCATCAGAAATTCATA-CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA-CCTATGCCA-AGGAGGAA-GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT-TTTTTGTCACATAACA-TGG-AAATTAGA-TTTGCCA-GAGAGGAGTAATGTTGT-CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT-GTGCATGGA-CCTGTTAGAACAAAGTTATCTCGAATCGAAGC----TAAGTTATATGCAAAGCTTATTTAGGAATG-GCAAAATTTCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK068941 [TCTTCCTCCTCCTCCTCCACCCCCAAAT CGCCTCGACGAGCGGCGCGGCGGCGAGGGCAGGAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACAGTGTGCACGGAGTGCGGCC TCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCCAACGAGTCCAGCGACAACGACCCCGTCCGTGTCGGCGGCCCGACCAACCCGCTCCTCACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCAGGGGGAGTTCCTCTCCTCCTCCCTCGGCAGGTGGCAGAACCGCGGCTCCAACCCCGACCGCTCCCTCATCCTCGCCTTCCGCACCATCGCCAACATGGCCGACA GTTAGGTCTTGTGGCTACAATCAAGGACCGAGCCAATGAAATATATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGAAGAAATCAAGATGCCATATTAGCTG CCTGTTTGTATATTGCTTGTAGACAAGAGGATCGGCCTAGAACTGT AAAAGAAATATGTTCGGTCGCTAATGGAGCAACAAAGAAAGAGATAGGCCGAGCAAAGGAA TTTATCGTGAAGCAACTGGAAGTTG AAATGGGTCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACTATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGATACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCTCGAATCGAAGC TAAGTTATATGCAAAGCTTATTT ]
[+] EMBL AU164999 [ CCTCCTCCACCCCCAAAT CGCCTCGACGAGCGGCGCGNCGGCGAGGGCAGGAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCG ACTCGGCGGGGGACACAGTGTGCACGGAGTGGGTCC TCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCCAACGAGTCCAGCGACAACGACC ]
[+] EMBL AF464908 [ ACCCCCAAATACGCCTCGACGAGCGGCGCGCCGGCGAGGGCAGGAAAAA AGCGGCGGCGGCGGCGGGGGCGAAATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACGGTGTGCACGGAGTGCGGCC TCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCCAACGAGTCCAGCGACAACGACCCCGTCCGTGTCGGCGGCCCGACCAACCCGCTCCTCACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCAGGGGGAGTTCCTCTCCTCCTCCCTCGGCAGGTGGCAGAACCGCGGCTCCAACCCCGACCGCTCCCTCATCCTTGCCTTCCGCACCATCGCCAACATGGCCGACAGGTTAGGTCTTGTGGCTACAATCAAGGACCGAGCCAATGAAATATATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGAAGAAATCAAGATGCCATATTAGCTG CCTGTTTGTATATTGCTTGTAGACAAGAGGATCGGCCTAGAACTGT AAAAGAAATATGTTCGGTCGCTAATGGAGCAACAAAGAAAGAGATAGGCCGAGCAAAGGAA TTTATCGTGAAGCAACTGGAAGTTG AAATGGGTCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAA TTTTTTCTTTTCT TCTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTCT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATTTCGAATCGAATCGAAGTAAGTTATATGCAAAGCTTATTTAGGAATG GCAAAATTTCATG ]
[+] EMBL AU068158 [ CCTCGACGAGCGGCGCGNCGTCGAGGGCAGGAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACAGTGTGCACGGAGTG GNCCNTCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGANTGGCGGACGTTCGNCAACNAGTCCAGCGACAACGACCCCGTCCGTTTCGGCGGCCCGACCAACCCGCTCCTCACCGACGGCGGCCTNTTCACCGTNAT ]
[+] EMBL CB663920 [ CCTCCCCTAGCGGCGCGGCGGCGCGGGCAAGAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACAGTGTGCACGGAGTGCGGCC TCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCCAACGAGTCCAGCGACAACGACCCCGTCCGTGTCGGCGGCCCGACCAACCCGCTCCTCACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCAGGGGGAGTTCCTCTCCTCCTCCCTCGGCAGGTGGCAGAACCGCGGCTCCAACCCCGACCGCTCCCTCATCCTCGCCTTCCGCACCATCGCCAACATGGCCGACAGGTTAGGTCTTGTGGCTACAATCAAGGACCGAGCCAATGAAATATATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGAAGAAATCAAGATGCCATATTAACTG CCTGTTTGT ]
[+] EMBL BP184705 [ GCGGCGAGGGCAGGAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGACTGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACAGTGTGCACGGAGTGCGGCC TCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCCAACGAGTCCAGCGACAACGACCCCGTCCGTGTCGGCGGCCCGACCAACCCGCTCCTCACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCAGGGGGAGTTCCTCTCCTCCTCCCTCGGCAGGTGGCAGAACCGCGGCTCCAACCCCGACCGCTCCCTCATCCTCGCCTTCCGCACCATCGCCAACATGGCCGACAGGTTAGGTCTTGTGGCTACAATCAAGGACCGAGCCAATGAAATATATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGAAGAAATCAAGATGCCATATTAGCTG CCTGTTTGTATATTGCTTGTAGACAAGAGGATCGGCCTA ]
[-] EMBL CB663879 [ AATCAAGATGCCATATTAGCTG CCTGTTTGTATATTGCTTGTAGACAAGAGGATCGGCCTAGAACTGT AAAAGAAATATGTTCGGTCGCTAATGGAGCAACAAAGAAAGAGATAGGCCGAGCAAAGGAA TTTATCGTGAAGCAACTGGAAGTTG AAATGGGTCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCTCGAATCGAAGC TAAGTTATATGCAAAGCTTATTTAGGAATG GCAAAATT ]
[+] EMBL AU068157 [ CATATTANCTGCCCTGTTNGTATATTGCTTGTAGACAAGAGGATCGGCCTAGAACTGTAAAAAGAAATATGTTCGGTCGCTAATGGAGCAACANAGAAAGAGATAGGCCGAGCAAAGGAA TTTATCGTGAAGCAACTGGAAGTTG AAATGGGTCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAACCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACA TGG AAATTNGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCTCGAATCGAAGC TAAGTTATATGCAAAGCTTATTTAGGAATG GCAAAAa ]
[+] EMBL BM038845 [ tatAAAGAGATA GCCGA CCAAGGAATTTTATCGTGAA CCACTGGAAGTTG AAATGGGTC ATCTATGGAGAT GGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCACTTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCACAGGAGGAACGACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTATCCTGCATGGACCCTGTTAGAACAAAaaaaa ]
[+] EMBL BM419889 [ CGACCAA GAA TTTATC TTAAACCACTGGAATTTGNAAAT GGTC ATCTATGGAGATGGGAACCATCCATGCTGGAGATTTCCCTGA GCGTTTCTGTTCAACTCTTGGGATGAACCATCAAGCT TTAAA CAGCCCAGGAA CA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCC TTGC GCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCACGAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCC AACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCTATTTTTGTCACATAACA TGG AAATTAGA TTTGCCC GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATC CTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACCAAGTTATCTCGAATCGAAGC TAAGTTATATGC AAGCTTATTTAGGAATG GCCAAAaaaaaaa ]
[+] EMBL AK058238 [ CAACTGGAAGTTG AAATGGGTCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCT ]
[+] EMBL BM419222 [ ATCTATGGAGATGGGAACCATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAAGCAGCCCAGGAAGCA GTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCAGATGATAAGAAGCCTCTGAAAGACATATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACA TGGNNAATTAGA TTTGCCA GAGAGGAGTAATGTTGTCCCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCTCGAATCGAAGC TAAGTTATATGCAAAGCTTATTTNGGNATG GCAAA NCA AAAAAAAAA ]
[+] EMBL BM419022 [ ATCCATGCTGGAGATTT CCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACCATCAAGCTGTTAAAGCAGCCCAGGAAGCACGTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCC TTGCGGCTGCTGTCATTTACATGATAACCCAACTGCTCAGATGATAAGAAGCCTCTGAAAGACATATCCCGTTGGCTACCTGGTGTGGCA GAAGGTACCATCAGAAATTCATACCAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCCAACACCCTATGCCN AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTTCTTTTCT TTTTTGTCACATAACACTGG AAATTAGACTTTGCCACGAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATC CTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACCAAGTTATCTCGAATCGAAGC TAAGTTATATGC AAGCTTATTTAGGAATGNGCCAAATTTCATGCCAAAAAAAAAA ]
[+] EMBL AU029675 [ TCCA TTGCGGCTGCTGTCATTTACATGATAACCCAACT CTCNGATGATAAGANGCCTCTGAAAGCCATATCC TTGGCTA CTGGTGTGGCA GAAGGTNCCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGNGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTNCTCCTCT TTTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCTCGAATCGAAGC TAAGTTATATGCAAAGCTTATTTAGGNNTG GCAAAA A AAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AA752483 [ cgagATCC TTGGCTA CTGGTGTGGCA GAAGGTACCATCAGAAATTCATA CAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACA CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCAT ]
[-] EMBL CB663921 [ ATCAGAAATTCATA CAAGGGTCTGTATCCCTATGCTTCAAGGCTCATCCCAAACG CCTATGCCA AGGAGGAA GACCTGAAGAATCTGTGCACACCATAGGAAATTTTTGTCTTTTCT TTTTTGTCACATAACA TGG AAATTAGA TTTGCCA GAGAGGAGTAATGTTGT CCTTGGATGTGAGTTTTACTGGCCCATGGATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCT ]
[+] EMBL CF315954 [ TTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTAT GTGCATGGA CCTGTTAGAACAAAGTTATCTCGAATCGAAGC TAAGTTATATGCAAAGCTTATTTAGGAATG GCAAAATTTCATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[GGGCCCACCCAAGAAGAAGATTTGGNCCGGGCAAAGAAATNTATCGTGAAGCCACCTGGAAGGTTTGAAACTGGGTCCAATCCTATGGAGATGGGAACCACCCCATGCTGGAGATTTTCCTGAGGCGTCTTCTGTTCAACTCTTGGGATGAACACATCATAGCTGTTNAAGCAGCCCNGGATACAGTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCACTTGCGGCTGCTGTCATGTTACATGATNACCCACACTNTCAGATGAGTAACGACACGCCTTTGAGAAGTACACTATCCTTGGCTACTGGCTGTGTGTCAGAAGGTACCACTCAGAAATTCATACAAGGATCTGTATCCCTATGTCTTCAAGGCTCATCCCAAACACCCTATCGCCAAGGAGGAAGACCCTCGAAGAATCTGTGCACACCACTAGGAAATCTTGTTTTCGTNGTTCCTTTTTTGTCACACTAACCACTGGAAATTAGATTTCGCCAGAGAGGACGTAATGTTGTCCTTGGATGTGAGTTTTACTGGCCCANGTATCACTGCACCTAATTTTATGCGCATGGACCTGTTAGAACAAAGTTATCTCGAATCGAAGCTAAGTTATATGCAAAGCTTATCNTACGGAATGGCAAAAAAAAAA]
[+] EMBL BM419087 [GGGCCCACCCAAGAAGAAGATTTGGNCCGGGCAAAGAAATNTATCGTGAAGCCACCTGGAAGGTTTGAAACTGGGTCCAATCCTATGGAGATGGGAACCACCCCATGCTGGAGATTTTCCTGAGGCGTCTTCTGTTCAACTCTTGGGATGAACACATCATAGCTGTTNAAGCAGCCCNGGATACAGTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCACTTGCGGCTGCTGTCATGTTACATGATNACCCACACTNTCAGATGAGTAACGACACGCCTTTGAGAAGTACACTATCCTTGGCTACTGGCTGTGTGTCAGAAGGTACCACTCAGAAATTCATACAAGGATCTGTATCCCTATGTCTTCAAGGCTCATCCCAAACACCCTATCGCCAAGGAGGAAGACCCTCGAAGAATCTGTGCACACCACTAGGAAATCTTGTTTTCGTNGTTCCTTTTTTGTCACACTAACCACTGGAAATTAGATTTCGCCAGAGAGGACGTAATGTTGTCCTTGGATGTGAGTTTTACTGGCCCANGTATCACTGCACCTAATTTTATGCGCATGGACCTGTTAGAACAAAGTTATCTCGAATCGAAGCTAAGTTATATGCAAAGCTTATCNTACGGAATGGCAAAAAAAAAA]
consensusID : consensus_15267#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[AGGAGGGAAACTTTGATATAAAGGAGGGACTCCTATCTGTCCATGCGCAGTCTGGCTTGGTGCAATTGGTGACATGCGATGAACCCCATACTGCTGCAGATGATGAAGAACGCTCTGCTTGGAAAAAGGACAATGATGCCTGTGGGCTACTGGGGTGGTCGCAAGAAGGGTCACCCAATGCAGGAAATTGCATACAAGGATCTGTATGCCCTGATGGCTTGCAAGGCTGCATGCCCAACACCTGATGCCCAAGGAGGGAAGACCTGGAAGAATGCTGGTGCCACACCCATGAGGAAATTTGTTGTTGCTGTGTTGCTTTTTTGTGCACATGAACACTGGGAAATTGAGATTTCCAGAGAGGAGTAAATGTTCGTGCCTGTGGAGATGGTGATTTTACTGGCCCATGTATCCGCACCTAATTTTATGGCAGGGACCTGTTAGAACAAAGTTATCTCGAATCGAAGCTAAGTTATATGCAAAGCTTATTTAGGAATGGCCAAAA]
[+] EMBL BI802668 [AGGAGGGAAACTTTGATATAAAGGAGGGACTCCTATCTGTCCATGCGCAGTCTGGCTTGGTGCAATTGGTGACATGCGATGAACCCCATACTGCTGCAGATGATGAAGAACGCTCTGCTTGGAAAAAGGACAATGATGCCTGTGGGCTACTGGGGTGGTCGCAAGAAGGGTCACCCAATGCAGGAAATTGCATACAAGGATCTGTATGCCCTGATGGCTTGCAAGGCTGCATGCCCAACACCTGATGCCCAAGGAGGGAAGACCTGGAAGAATGCTGGTGCCACACCCATGAGGAAATTTGTTGTTGCTGTGTTGCTTTTTTGTGCACATGAACACTGGGAAATTGAGATTTCCAGAGAGGAGTAAATGTTCGTGCCTGTGGAGATGGTGATTTTACTGGCCCATGTATCCGCACCTAATTTTATGGCAGGGACCTGTTAGAACAAAGTTATCTCGAATCGAAGCTAAGTTATATGCAAAGCTTATTTAGGAATGGCCAAAA]
consensusID : consensus_15267#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[TTTCGGCACGAGGAAGGTACCATCAGAAATTCATACAAGGATCCTGTATCCCTATGCTTCAAGGCTCATCCCAAACACCTATGCCAAGGAGGAAGACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTCTTTTCTTTTTTGTCACATAACATGGAAATTAGATTTGCCAGAGAGGAGTAATGTTGTCCTTGGATGTGAGTTTTACTGGCCCATGTTTCACTGCACCTAATTTTATGTGCATGGACCTGTTAAACAAAGTTATCTCGAATCGAANCTAAGTTATATGCAAAGCTTATTTAG]
[+] EMBL AA751776 [TTTCGGCACGAGGAAGGTACCATCAGAAATTCATACAAGGATCCTGTATCCCTATGCTTCAAGGCTCATCCCAAACACCTATGCCAAGGAGGAAGACCTGAAGAATCTGTGCACACCATAGGAAATTTTTTCTTTTCTTTTTTGTCACATAACATGGAAATTAGATTTGCCAGAGAGGAGTAATGTTGTCCTTGGATGTGAGTTTTACTGGCCCATGTTTCACTGCACCTAATTTTATGTGCATGGACCTGTTAAACAAAGTTATCTCGAATCGAANCTAAGTTATATGCAAAGCTTATTTAG]
consensusID : consensus_15267#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTNGGCACANAACATGGAAATTANATTTGCCANANAGGAGTAATGTTGNCCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTATGTGCATGGACCTGTTAAAACAAAGTTATNTCGAATCGAAGCTAAGTTATATGCAAAGCTTATTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCGGCCC]
[-] EMBL AU181294 [TTTTTTTTTTTTTTTTTTTTTTTTNGGCACANAACATGGAAATTANATTTGCCANANAGGAGTAATGTTGNCCTTGGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTTTATGTGCATGGACCTGTTAAAACAAAGTTATNTCGAATCGAAGCTAAGTTATATGCAAAGCTTATTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCGGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 TCTTCCTCCTCCTCCTCCACCCCCAAATCGCCTCGACGAGCGGCGCGGCGGCGAGGGCAG 60
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 GAGAGAGGCGGCGGCGGCGGCGGCGGCGGGGGCGAGATGAGCGACTCGTTCTGCCCGGAC 120
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 TGCAAGAAGCACACGGAGGTGGCGTTCGACCACTCGGCGGGGGACACAGTGTGCACGGAG 180
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 TGCGGCCTCGTCCTGGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACGTTCGCC 240
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 AACGAGTCCAGCGACAACGACCCCGTCCGTGTCGGCGGCCCGACCAACCCGCTCCTCACC 300
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 GACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCAGGGGGAGTTCCTCTCC 360
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 TCCTCCCTCGGCAGGTGGCAGAACCGCGGCTCCAACCCCGACCGCTCCCTCATCCTCGCC 420
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 TTCCGCACCATCGCCAACATGGCCGACAGGTTAGGTCTTGTGGCTACAATCAAGGACCGA 480
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ------------------------------------------------------------
consensus_15267#0 GCCAATGAAATATATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGAAGAAATCAAGAT 540
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 ----------------------------------GGGCCCACCCAAGAAGAAGATTTGGN 26
consensus_15267#0 GCCATATTAGCTGCCTGTTTGTATATTGCTTGTAGACAAGAGGATCGGCCTAGAACTGTA 600
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 CCGGGCAAAGAAATNTATCGTGAAGCCACCTGGAAGGTTTGAAACTGGGTCCAATCCTAT 86
consensus_15267#0 AAAGAAATATGTTCGGTCGCTAATGGAGCAACAAAGAAAGAGATAGGCCGAGCAAAGGAA 660
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 GGAGATGGGAACCACCCCATGCTGGAGATTTTCCTGAGGCGTCTTCTGTTCAACTCTTGG 146
consensus_15267#0 TTTATCGTGAAGCAACTGGAAGTTGAAATGGGTCAATCTATGGAGATGGGAACCATCCAT 720
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 -AGGAGGGAAACTTTGATATAAAGGAGGGACTCCTATCTGTCCA-TGCGCAGTCTGGCTT 58
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 GATGAACACATCATAGCTGTTNAAGCAGCCCNGGATACAGTTCAGCGTTCAGAGGAACTT 206
consensus_15267#0 GCTGGAGATTTCCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACAATCAAGCTGTTAAA 780
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 GGTGCAATTGGTGACATGCGATGAACCCCATACTGCTGC------AGATGATGAAGAACG 112
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 GATATAAGGAGGAGTCCTATTTCCACTTGCGGCTGCTGTCATGTTACATGATNACCCACA 266
consensus_15267#0 GCAGCCCAGGAAGCAGTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCC 840
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 CTCTGCTTGGAAAAAGGACAATGATGCCTGTGGGCTACTGGG-GTGGTCGCAAGAAGGGT 171
consensus_15267#3 -----------------------------------------T-TTCGGCACGAGGAAGGT 18
consensus_15267#1 CTNTCAGATGAGTAACGACACGCCTTTGAGAAGTACACTATCCTTGGCTACTGGCTGTGT 326
consensus_15267#0 ATTGCGGCTGCTGTCATTTACATGATAACCCAACTCTCAGATGATAAGAAGCCTCTGAAA 900
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 CACCCAATGCA------GGAAATTGCATACAAGGATCTGTATGCCCTGATGGCTTGCAAG 225
consensus_15267#3 -----ACCATC------AGAAATT-CATACAAGGATCC-TGTATCCCTATGCTT--CAAG 63
consensus_15267#1 GTCAGAAGGTACCACTCAGAAATT-CATACAAGGATCTGTAT--CCCTATGTCTT-CAAG 382
consensus_15267#0 GACATATCCTTGGCTACTGGTGTGGCAGAAGGTACCATCAGAAATTCATACAAGGATCTG 960
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 GCTGCATGCCCAACACCTGATGCCCAAGGAGGGAAGACCTGGAAGAATGCTGGTGCCACA 285
consensus_15267#3 GCT-CATCCCAAACACCT-ATGCC--AAGGAGGAAGACCTG-AAGAATCT--GTGC-ACA 115
consensus_15267#1 GCT-CATCCCAAACACCCTATCGCCAAGGAGGAAGACCCTCGAAGAATCT--GTGC-ACA 438
consensus_15267#0 TATCCCTATGCTTCAAGGCTCATCCCAAACACCTATGCCAAGGAGGAAGACCTGAAGAAT 1020
consensus_15267#4 ------------------------------------------------------------
consensus_15267#2 CCCATGAGGAAATTTGTTGTTGCTGTGTTGCTTTTTTGTGCACATGAACACTGGGAAATT 345
consensus_15267#3 CC-AT-AGGAAATTTTTTCTT-------TTCTTTTTTGT-CACAT-AACAT--GGAAATT 162
consensus_15267#1 CCACTAGGAAATCTTGTTTTCGTNGT--TCCTTTTTTGT-CACACTAACCACTGGAAATT 495
consensus_15267#0 CTGTGCACACCATAGGAAATTTTTTTCTTTTCTTTTTTGTCACAT-AACAT--GGAAATT 1077
consensus_15267#4 -------------TTTTTTTTTTTTTTTTTTTTTTTTNGGCACAN-AACAT--GGAAATT 44
* * ***** **** *** *******
consensus_15267#2 GAGATTT-CCAGAGAGGAGTAAATGTTCGTGCCTGTGGAGATGGTGATTTTACTGGCCCA 404
consensus_15267#3 AGATTTG-CCAGAGAGGAGTAA-TGTT-GTCCTTG----GATGTGAGTTTTACTGGCCCA 215
consensus_15267#1 AGATTTCGCCAGAGAGGACGTAATGTT-GTCCTTG----GATGTGAGTTTTACTGGCCCA 550
consensus_15267#0 AGATTTG-CCAGAGAGGAGTAA-TGTT-GTCCTTG----GATGTGAGTTTTACTGGCCCA 1130
consensus_15267#4 ANATTTG-CCANANAGGAGTAA-TGTT-GNCCTTG----GATGTGAGTTTTACTGGCCCA 97
** *** * **** * **** * * ** **** *************
consensus_15267#2 TGTAT--CCGCACCTAATTTTATG-GCAGGGACCTGTTAGAACAAAGTTATCTCGAATCG 461
consensus_15267#3 TGTTTCACTGCACCTAATTTTATGTGCATGGACCTGTTA-AACAAAGTTATCTCGAATCG 274
consensus_15267#1 NGTATCACTGCACCTAATTTTATGCGCATGGACCTGTTAGAACAAAGTTATCTCGAATCG 610
consensus_15267#0 TGTATCACTGCACCTAATTTTATGTGCATGGACCTGTTAGAACAAAGTTATCTCGAATCG 1190
consensus_15267#4 TGTATCACTGCACCTAATTTTATGTGCATGGACCTGTTAAAACAAAGTTATNTCGAATCG 157
** * * *************** *** ********** *********** ********
consensus_15267#2 AAGCTAAGTTATATGCAAAGCTTATTTA--GG---------------AATGGCCAAAA-- 502
consensus_15267#3 AANCTAAGTTATATGCAAAGCTTATTTA--G----------------------------- 303
consensus_15267#1 AAGCTAAGTTATATGCAAAGCTTATCNTACGG---------------AATGGCAAAAAAA 655
consensus_15267#0 AAGCTAAGTTATATGCAAAGCTTATTTAGGAATGGCAAAATTTCATGAAAAAAAAAAAAA 1250
consensus_15267#4 AAGCTAAGTTATATGCAAAGCTTATTTAGGAA---------------AAAAAAAAAAAAA 202
** **********************
consensus_15267#2 ------------------------------------------------------------
consensus_15267#3 ------------------------------------------------------------
consensus_15267#1 AAA--------------------------------------------------------- 658
consensus_15267#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1310
consensus_15267#4 AAAAAAAAAAAAAAAAAAGGGGGGGGGCGGCCC--------------------------- 235
consensus_15267#2 ----------------------------
consensus_15267#3 ----------------------------
consensus_15267#1 ----------------------------
consensus_15267#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 1338
consensus_15267#4 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||