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Oryza sativa
cluster # 15268 cluster # 15268       Sequences # 21       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15268#0 length = 845 sequences # 18  
consensus_15268#1 length = 525 sequences # 2  
consensus_15268#2 length = 298 sequences # 1  

consensusID : consensus_15268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 845
fasta sequence
                              [CGACCCACGCGTCCGCCANTACTCAGTCCTCACCTCGGTAGCTAATACTACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGA-CGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT-GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC-ACGGTGGGCGCCAAGGCGGCCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTATGTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTGTTTTCCCTTTCCTTAAAAAGGGGAAATTCCGGGGCCTTAAAAT]

[+] EMBL AU197560             [CGACCCACGCGTCCGCCANTACTCAGTCCTCACCTCGGTAGCTAATACTACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGAGCGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK068670             [            actCCACTACTCAGTCCTCACCTCGGTAGCTAATACTACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGAGCGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGTGGGCGCCAAGGCGGCCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTAT                                                                                                                                                   ]
[+] EMBL C29135               [                        AGTCCTCACCTCGGTAGCTAATACTACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGA NAAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGNGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCNGGGCCTCGCCGCGGGGGTCGGCTTCGTNAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGNCCGCGTTNGCCGCCTACTTCCTCTGGCCCACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU069659             [                         GTCCTCACCTCGGTAGCTAATACTACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGA CAAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTNGGGAAGTCGGCGCTNGNCGTCGGCGGGGNCGCCGTng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK103128             [                                       AGCTAATACTACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGAGCGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGTGGGCGCCAAGGCGGCCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTAT                                                                                                                                                   ]
[+] EMBL AU164761             [                                                 ACTTTACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGA CGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGNGNGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCANGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGNNCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCAac                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU197389             [                                                      ACTTTATTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGA CGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGTGGGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCNACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCNGCGCAACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C27916               [                                                      ACTTTATNACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGA NAAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGNCTCCACCGT GGCGGCGGCGGCCAAGCNGNGCCTCGCCGCGGGGNTCGGCTTCGTAAAGGAGCAGGGCGTGGGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU069960             [                                                                              GCTTAGCAGAATATGGTTGGCGTGAGCGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU100924             [                                                                         ttngacaTTAGCAGAATATGGTTGGCGTNA CAAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCNCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGNTCGGCTTCNTAAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCNTCGGCGGGNNCGCCGTGGCCGCCTACTTCCTCTGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU091992             [                                                                                            GGTTGGCGTGA CGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU076230             [                                                                                            GGTTGGCGTGA CGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGNNCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU091993             [                                                                                            GGTTGGCGTGAGCGAGTTCGTCGGCGGCCTGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGT GGCGGCGGCGGCCAAGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGTGGGCc                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU100925             [                                                                                                                                                                                CGGCCAAGCCGGGNCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGNGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCNGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU065289             [                                                                                                                                                                                              CTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGNGTGGGGAAGTCGGCGCTGGCCGTCGGCGGNGCCGCCGTGGCCGCCTACTTCNTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCCGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU065330             [                                                                                                                                                                                                                               GGCGTGGGGAAGTCGGCGCTGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGGCGAACCCCAAGCTCTACTTCCACCTCCTGCGC ACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU176442             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTATGTAGGAAAAAAAA                                                                                                                    ]
[+] EMBL CF316573             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTGTTTTCCCTTTCCTTAAAAAGGGGAAATTCCGGGGCCTTAAAAT]


>consensus_15268#0 CGACCCACGCGTCCGCCANTACTCAGTCCTCACCTCGGTAGCTAATACTACTTTACTTTA TTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGACGAGTTCGTCGGCGGCC TGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGTGGCGGCGGCGGCCA AGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGC TGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCG GCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGG CGAACCCCAAGCTCTACTTCCACCTCCTGCGCACGGTGGGCGCCAAGGCGGCCGCCGCCG CTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTG GCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGG GATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTA GTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAAT AAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTATGTAG GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAACCCTTTGTTTTCCCTTTCCTTAAAAAGGGGAAATTCCGGGGCCTT AAAAT



consensusID : consensus_15268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence
                              [ATCGGCGCTGGCCGTCGGCGGGGCCNCCGTGGCCGCCTACTTCCTTTGGCCCACGGCGGCATTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGGTAAGTCATTTCCCGGGCGGCGTTTCTGGCGAACCCCCAAGTTNAATTTCAACTTCTTGCGCACGGTGGGCGCCAAGGCGGCCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC]

[-] EMBL AW155613             [ATCGGCGCTGGCCGTCGGCGGGGCCNCCGTGGCCGCCTACTTCCTTTGGCCCACGGCGGCATTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGGTAAGTCATTTCCCGGGCGGCGTTTCTGGCGAACCCCCAAGTTNAATTTCAACTTCTTGCGCACGGTGGGCGCCAAGGCGGCCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC]
[-] EMBL AW155573             [   GGCANTGGCCGTCGGCGGGGCCACCGTGGCCGCTTATTTCCTTTGGCCCACGGCGGCAGTGGGGGGAGCCATAATGAACGCGCCCGGCCCCGCCNGNTAATGCATCTCCCGGGCGGAGTTTCTTGGGAACCACCAAGTTTACTTCCCCCTTCCTGCGCACGGTGGGCGCCAAGGCGGCCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC]


>consensus_15268#1 ATCGGCGCTGGCCGTCGGCGGGGCCNCCGTGGCCGCCTACTTCCTTTGGCCCACGGCGGC ATTCGGCGGCGCCATCATGAACGCGCCGGGCGCCGCCGGGTAAGTCATTTCCCGGGCGGC GTTTCTGGCGAACCCCCAAGTTNAATTTCAACTTCTTGCGCACGGTGGGCGCCAAGGCGG CCGCCGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCG CTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAA TTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTG TGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTC ATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAA CTTAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC



consensusID : consensus_15268#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [GCCGCTTTCCTGTAGGGAANAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAANCNCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACNCTTGTTTGGCTGTGAANCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGNCGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTNNTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98997               [GCCGCTTTCCTGTAGGGAANAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAANCNCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACNCTTGTTTGGCTGTGAANCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGNCGTGGTTATATGCTAGTACATCCATGGTCATGTGTAATAAGGTGCCGTGTAATAAGTTTTTGTGGTNNTTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15268#2 GCCGCTTTCCTGTAGGGAANAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGC GTTGGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAANCNCCTTGCTAATTAAG GAGGGATTTGTGATGGAGTTCATGCTTAGATTACNCTTGTTTGGCTGTGAANCTGTGTGG GCTAGTAATTCACGGTGTTTAGGCGNCGTGGTTATATGCTAGTACATCCATGGTCATGTG TAATAAGGTGCCGTGTAATAAGTTTTTGTGGTNNTTAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15268#1      ------------------------------------------------------------
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      CGACCCACGCGTCCGCCANTACTCAGTCCTCACCTCGGTAGCTAATACTACTTTACTTTA 60
                                                                                   

consensus_15268#1      ------------------------------------------------------------
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      TTACTGTCGTTTTGGTTTGCTTAGCAGAATATGGTTGGCGTGACGAGTTCGTCGGCGGCC 120
                                                                                   

consensus_15268#1      ------------------------------------------------------------
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      TGCTCAACTCCGCCAAGAGCGCGGTGGCGGCCGTGGCCTCCACCGTGGCGGCGGCGGCCA 180
                                                                                   

consensus_15268#1      ----------------------------------------------------ATCGGCGC 8
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      AGCCGGGCCTCGCCGCGGGGGTCGGCTTCGTGAAGGAGCAGGGCGTGGGGAAGTCGGCGC 240
                                                                                   

consensus_15268#1      TGGCCGTCGGCGGGGCCNCCGTGGCCGCCTACTTCCTTTGGCCCACGGCGGCATTCGGCG 68
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      TGGCCGTCGGCGGGGCCGCCGTGGCCGCCTACTTCCTCTGGCCCACGGCGGCAGTCGGCG 300
                                                                                   

consensus_15268#1      GCGCCATCATGAACGCGCCGGGCGCCGCCGGGTAAGTCATTTCCCGGGCGGCGTTTCTGG 128
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      GCGCCATCATGAACGCGCCGGGCGCCGCCGGCTACGTCATCTCCCGCGCGGCGTTCCTGG 360
                                                                                   

consensus_15268#1      CGAACCCCCAAGTTNAATTTCAACTTCTTGCGCACGGTGGGCGCCAAGGCGGCCGCCGCC 188
consensus_15268#2      ---------------------------------------------------------GCC 3
consensus_15268#0      CGAACCCC-AAGCTCTACTTCCACCTCCTGCGCACGGTGGGCGCCAAGGCGGCCGCCGCC 419
                                                                                ***

consensus_15268#1      GCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTT 248
consensus_15268#2      GCTTTCCTGTAGGGAANAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTT 63
consensus_15268#0      GCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTT 479
                       **************** *******************************************

consensus_15268#1      GGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAG 308
consensus_15268#2      GGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAANCNCCTTGCTAATTAAGGAG 123
consensus_15268#0      GGCTTGCTGGTTCGTGTGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAG 539
                       **************************************** * *****************

consensus_15268#1      GGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCT 368
consensus_15268#2      GGATTTGTGATGGAGTTCATGCTTAGATTACNCTTGTTTGGCTGTGAANCTGTGTGGGCT 183
consensus_15268#0      GGATTTGTGATGGAGTTCATGCTTAGATTACTCTTGTTTGGCTGTGAATCTGTGTGGGCT 599
                       ******************************* **************** ***********

consensus_15268#1      AGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAA 428
consensus_15268#2      AGTAATTCACGGTGTTTAGGCGNCGTGGTTATATGCTAGTACATCCATGGTCATGTGTAA 243
consensus_15268#0      AGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGTGTAA 659
                       ********************** *************************************

consensus_15268#1      TAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTAAAAA 488
consensus_15268#2      TAAGGTGCCGTGTAATAAGTTTTTGTGGTNNTTAA--------------------AAAAA 283
consensus_15268#0      TAAGGTGCCGTGTAATAAGTTTTTGTGGTAATTAAGTATGTTGCCGTTTAAACTTATGTA 719
                       *****************************  ****                    *   *

consensus_15268#1      AAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC----------------------- 525
consensus_15268#2      AAAAAAAAAAAAAAA--------------------------------------------- 298
consensus_15268#0      GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 779
                         *************                                             

consensus_15268#1      ------------------------------------------------------------
consensus_15268#2      ------------------------------------------------------------
consensus_15268#0      AAAAAAAAAAAAAAAACCCTTTGTTTTCCCTTTCCTTAAAAAGGGGAAATTCCGGGGCCT 839
                                                                                   

consensus_15268#1      ------
consensus_15268#2      ------
consensus_15268#0      TAAAAT 845
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)