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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 907 fasta sequence
[TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAG-CATG-GCTTCCAGGGCATTCCT-CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT-CGCGGCGTGCGCCGACGTGCTGGGCC---TC-GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC-CTCGCCGACCTTGAGGCCGCCGTCTGTCTC-TGCACCGCCATCAAGGCCAACGTGCT-CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT-GCAT-GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA-GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG-AATTATTTTTTAAAAAAAAAATAAAAAAAAA]
[+] EMBL AK058218 [TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAGCCATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAAACAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATCGCATGCAATGGATACTC ]
[-] EMBL CB643292 [ CATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAGCCATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTTTTTTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTTGACGCCGTTGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTTTT TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTAATGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTGGTTCTTGAGTGCCT GCAT GCATATCGGTGGAGTCTTTACTTACTCTGTTATTAGTTTTGAATGTA GAACTGCTTCAGATATCAATCCAGGGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATGGATGGAGGTTTTGT ]
[+] EMBL C74096 [ CATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTNTACGCTTTCAGCTAGCGTAN CATGNGCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGNCTTCGACGNCGTCGACGACGCCATCGACGNCGTCCTACAACACCANGTGCCCCAAGAACGNGCTCAAGTT CGCGGCGTGCG CGACGTGCTGGGNC TC GTCAGNGCCGAGGTCGGCCANGCGTCGTACGAGCCGT ]
[+] EMBL OS1321708 [ CACTTACGTAGCCCTGTGTGCAACGGCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTNGGCGGC CTCG CGACCTTGAGGCCGCCGTCTGTTTC TGCACCGCCATCAAGG CAACGTGCT CGGNATCACCCTCGANAT CCCGTAAAG TCAGCt ]
[+] EMBL OSS15892A [ AGCCCTGTGTGC ACGGCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTNGGCGGC CTCG CGACCTTGAGGCCGGCGTCTGTNTC TGCACCGNCATCAAGG ]
[+] EMBL OSS4321A [ AGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGNCGTCGACGACGTCATCGACGNCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCG CGACCTTGAGGCCGCCGTCTGTCTN TGAACCGCAATCAAGGCCAACGTGTT CGGAATnaa ]
[+] EMBL C74084 [ CCCTGTGTGC ACGNCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAN CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTNCCCCAAGAACGCGCTCAAGTT CGCGGCGTNCGCCGACGTGCTGGGCC TC GTCANCGCCGAGGTCGGCCAACCGCCGTACGAGCCGT ]
[+] EMBL AU029427 [ GCATTCCTCCCTCGTGGCTCTAAACCTGGT CTCTTCTTCACCGTGGCCA GCCTGCGGCAAGTACTNCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCCGC GCNTGCGCCGACNTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCNTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAAaaaaa ]
[+] EMBL AU174369 [ TT CGCGGCGTGCGCCGACGTGNTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTN TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTAaaaaa ]
[+] EMBL CB679517 [ GCGGCCTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGT ]
[+] EMBL BI805424 [ TGGGCCCCTTCGGTCAGC CCGA GTCGGCCA CCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCACTCGCCGACCTTGAGGCC CCGTCTGTCTCGTGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGGCATGGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTACGCCCTNCCTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGA GTTTTGTTCTCCAAGGAATTGCATCCAATGNATACTCTTTTAGATTGAAaaaaaaaa ]
[+] EMBL BI807078 [ CAAGGCC ACGTGCTGCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATCCCAT CAAaaa ]
[+] EMBL CB684886 [ AACGCCTTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG AATTATTTTT ]
[+] EMBL AU032887 [ GAATGNA GAACTGCTTNAGATACCAATCCAGCGAG TAACTGNACTTGATTTGTNTATGTTCCTTCAGTTAATCAGTTTCTGNCATCATTTGGTNAATTAATGGAGGTTTTGTTCTCCAAGGAA TGCATGCAATGGATACTCTTTTAGATNGAATTTGGCGTGTNTATGTCTGGGTGTGGTTGTAATTTGCTNGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG AATTATTTTTTAAAAAAAAAATAAAAAAAAA]
[+] EMBL AU089786 [ GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAAATTA ]
consensusID : consensus_15269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGG-CCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA]
[+] EMBL AU032568 [NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGG CCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA]
[+] EMBL AU032570 [ gtgCCTCGGCGGCTTCGCCGACCTTGAGGCCCGCCNTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTA TGCGGCAAGAACNTCCCTAGTGGCTTCATCTGTGCTTAAGCTACNTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA]
consensusID : consensus_15269#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 480 fasta sequence
[AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGCCGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCCATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT]
[-] EMBL BE229331 [AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGCCGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCCATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT]
[+] EMBL CB684347 [ AACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCA ]
consensusID : consensus_15269#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGCGAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA]
[+] EMBL AU089787 [CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGCGAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA]
consensusID : consensus_15269#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAAAACAAAAAAAAAAAAAAAA]
[+] EMBL AU029444 [CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAAAACAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15269#2 ------------------------------------------------------------
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 ---------------------------NTGTGCA-AACGGCGCAAGTGCTTTGTTACGCT 32
consensus_15269#0 TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTG--TACGCT 58
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ------------------------------------------------------------
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 TTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCC 92
consensus_15269#0 TTCAGCTAGC-GTAGC-ATGGCTTCCAGGGCATTCCTCCTCGTGGCTCTAAACCTGGTCC 116
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ------------------------------------------------------------
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 TCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGA 152
consensus_15269#0 TCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGA 176
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ------------------------------------------------------------
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 CGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCG 212
consensus_15269#0 CGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCGCGG 236
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ------------------------AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAA 36
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 CGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGT 272
consensus_15269#0 CGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGT 296
consensus_15269#3 ----------------------------------------------------CACGCTTT 8
consensus_15269#2 GAAGGNGAATCNTNGN-GGCTTNGCCGACCTTGAAGCN-CCGTNNGTNTCTGCACCGCCA 94
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 GCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCA 332
consensus_15269#0 GCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCA 356
consensus_15269#3 CCNCTTGAAATGTTAA--NGNAAACTGGCTTTCAGAAT--TATTCAATTCCCAGGCGAGT 64
consensus_15269#2 TCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCN 154
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 TCAAGGCCAACGTGCTC--GGCATCACCCT-CGACATCCCCGTCAAGCTCAGCCTCCTCG 389
consensus_15269#0 TCAAGGCCAACGTGCTC--GGCATCACCCT-CGACATCCCCGTCAAGCTCAGCCTCCTCG 413
consensus_15269#3 TAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTG-TCATCATT-TGG 122
consensus_15269#2 TCAAANTANTGCGGCAAGNACGTCCCATAGTGG-TTCATCTG-TGCTTAAGCTACGTAAC 212
consensus_15269#4 -CAACTCACTGCGGNAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 57
consensus_15269#1 TCAACT-ACTGCGGCAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 446
consensus_15269#0 TCAACT-ACTGCGGCAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 470
consensus_15269#3 TCAATTAATGGAGGTTTTGTTCTCCA--AGGAATTCCATCCAATGGATACTCT-TTTAGA 179
*** * * ** *** ** * **** ** ** ** **
consensus_15269#2 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 272
consensus_15269#4 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 117
consensus_15269#1 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 506
consensus_15269#0 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 530
consensus_15269#3 TTGAATTTGGCGTGTCTATGT-CTGGGTGTGGTTGT---CAATTTGCTTGCA-GTACGTT 234
* * ** ** * * ** ** * * ** ** ** ** **** * **
consensus_15269#2 T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 328
consensus_15269#4 TTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACT-NTGTTA- 175
consensus_15269#1 T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 562
consensus_15269#0 T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 586
consensus_15269#3 CTCGTAGTTTAATTGTAAGCAAGCAATTGTA-CGACCAAA-ATGTACTTAGGACAGTTAA 292
*** ** *** ** *** ** ** * * * ****** ****
consensus_15269#2 TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTT 388
consensus_15269#4 TTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTT 235
consensus_15269#1 TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAA 622
consensus_15269#0 TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTT 646
consensus_15269#3 TTTGTTGGAAATTTCGGTGTGAATTATTTTTTAA------AATTTAAAAAAAAAAAAA-- 344
** *** *** * * ** * * * * ** * **** * *
consensus_15269#2 GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 448
consensus_15269#4 GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 295
consensus_15269#1 AA---------------------------------------------------------- 624
consensus_15269#0 GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 706
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 TTCTCCAAGGAATTGCATGCAATGGATACTCT---------------------------- 480
consensus_15269#4 TTCTCCAAAAACAAAAAAAAAAAAAAAA-------------------------------- 323
consensus_15269#1 ------------------------------------------------------------
consensus_15269#0 TTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTC 766
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ------------------------------------------------------------
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 ------------------------------------------------------------
consensus_15269#0 TGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATT 826
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ------------------------------------------------------------
consensus_15269#4 ------------------------------------------------------------
consensus_15269#1 ------------------------------------------------------------
consensus_15269#0 GTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTT 886
consensus_15269#3 ------------------------------------------------------------
consensus_15269#2 ---------------------
consensus_15269#4 ---------------------
consensus_15269#1 ---------------------
consensus_15269#0 TAAAAAAAAAATAAAAAAAAA 907
consensus_15269#3 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||