These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 907 fasta sequence [TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAG-CATG-GCTTCCAGGGCATTCCT-CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT-CGCGGCGTGCGCCGACGTGCTGGGCC---TC-GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC-CTCGCCGACCTTGAGGCCGCCGTCTGTCTC-TGCACCGCCATCAAGGCCAACGTGCT-CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT-GCAT-GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA-GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG-AATTATTTTTTAAAAAAAAAATAAAAAAAAA] [+] EMBL AK058218 [TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAGCCATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAAACAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATCGCATGCAATGGATACTC ] [-] EMBL CB643292 [ CATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAGCCATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTTTTTTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTTGACGCCGTTGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTTTT TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTAATGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTGGTTCTTGAGTGCCT GCAT GCATATCGGTGGAGTCTTTACTTACTCTGTTATTAGTTTTGAATGTA GAACTGCTTCAGATATCAATCCAGGGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATGGATGGAGGTTTTGT ] [+] EMBL C74096 [ CATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTNTACGCTTTCAGCTAGCGTAN CATGNGCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGNCTTCGACGNCGTCGACGACGCCATCGACGNCGTCCTACAACACCANGTGCCCCAAGAACGNGCTCAAGTT CGCGGCGTGCG CGACGTGCTGGGNC TC GTCAGNGCCGAGGTCGGCCANGCGTCGTACGAGCCGT ] [+] EMBL OS1321708 [ CACTTACGTAGCCCTGTGTGCAACGGCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTNGGCGGC CTCG CGACCTTGAGGCCGCCGTCTGTTTC TGCACCGCCATCAAGG CAACGTGCT CGGNATCACCCTCGANAT CCCGTAAAG TCAGCt ] [+] EMBL OSS15892A [ AGCCCTGTGTGC ACGGCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTNGGCGGC CTCG CGACCTTGAGGCCGGCGTCTGTNTC TGCACCGNCATCAAGG ] [+] EMBL OSS4321A [ AGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGNCGTCGACGACGTCATCGACGNCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCG CGACCTTGAGGCCGCCGTCTGTCTN TGAACCGCAATCAAGGCCAACGTGTT CGGAATnaa ] [+] EMBL C74084 [ CCCTGTGTGC ACGNCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAN CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTNCCCCAAGAACGCGCTCAAGTT CGCGGCGTNCGCCGACGTGCTGGGCC TC GTCANCGCCGAGGTCGGCCAACCGCCGTACGAGCCGT ] [+] EMBL AU029427 [ GCATTCCTCCCTCGTGGCTCTAAACCTGGT CTCTTCTTCACCGTGGCCA GCCTGCGGCAAGTACTNCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCCGC GCNTGCGCCGACNTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCNTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAAaaaaa ] [+] EMBL AU174369 [ TT CGCGGCGTGCGCCGACGTGNTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTN TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTAaaaaa ] [+] EMBL CB679517 [ GCGGCCTGCGCCGACGTGCTGGGCC TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGT ] [+] EMBL BI805424 [ TGGGCCCCTTCGGTCAGC CCGA GTCGGCCA CCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCACTCGCCGACCTTGAGGCC CCGTCTGTCTCGTGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGGCATGGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTACGCCCTNCCTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGA GTTTTGTTCTCCAAGGAATTGCATCCAATGNATACTCTTTTAGATTGAAaaaaaaaa ] [+] EMBL BI807078 [ CAAGGCC ACGTGCTGCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATCCCAT CAAaaa ] [+] EMBL CB684886 [ AACGCCTTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG AATTATTTTT ] [+] EMBL AU032887 [ GAATGNA GAACTGCTTNAGATACCAATCCAGCGAG TAACTGNACTTGATTTGTNTATGTTCCTTCAGTTAATCAGTTTCTGNCATCATTTGGTNAATTAATGGAGGTTTTGTTCTCCAAGGAA TGCATGCAATGGATACTCTTTTAGATNGAATTTGGCGTGTNTATGTCTGGGTGTGGTTGTAATTTGCTNGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG AATTATTTTTTAAAAAAAAAATAAAAAAAAA] [+] EMBL AU089786 [ GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAAATTA ] consensusID : consensus_15269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGG-CCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA] [+] EMBL AU032568 [NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGG CCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA] [+] EMBL AU032570 [ gtgCCTCGGCGGCTTCGCCGACCTTGAGGCCCGCCNTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTA TGCGGCAAGAACNTCCCTAGTGGCTTCATCTGTGCTTAAGCTACNTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA] consensusID : consensus_15269#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 480 fasta sequence [AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGCCGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCCATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT] [-] EMBL BE229331 [AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGCCGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCCATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT] [+] EMBL CB684347 [ AACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCA ] consensusID : consensus_15269#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGCGAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA] [+] EMBL AU089787 [CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGCGAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA] consensusID : consensus_15269#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAAAACAAAAAAAAAAAAAAAA] [+] EMBL AU029444 [CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAAAACAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15269#2 ------------------------------------------------------------ consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 ---------------------------NTGTGCA-AACGGCGCAAGTGCTTTGTTACGCT 32 consensus_15269#0 TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTG--TACGCT 58 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 ------------------------------------------------------------ consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 TTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCC 92 consensus_15269#0 TTCAGCTAGC-GTAGC-ATGGCTTCCAGGGCATTCCTCCTCGTGGCTCTAAACCTGGTCC 116 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 ------------------------------------------------------------ consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 TCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGA 152 consensus_15269#0 TCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGA 176 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 ------------------------------------------------------------ consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 CGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCG 212 consensus_15269#0 CGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCGCGG 236 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 ------------------------AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAA 36 consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 CGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGT 272 consensus_15269#0 CGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGT 296 consensus_15269#3 ----------------------------------------------------CACGCTTT 8 consensus_15269#2 GAAGGNGAATCNTNGN-GGCTTNGCCGACCTTGAAGCN-CCGTNNGTNTCTGCACCGCCA 94 consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 GCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCA 332 consensus_15269#0 GCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCA 356 consensus_15269#3 CCNCTTGAAATGTTAA--NGNAAACTGGCTTTCAGAAT--TATTCAATTCCCAGGCGAGT 64 consensus_15269#2 TCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCN 154 consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 TCAAGGCCAACGTGCTC--GGCATCACCCT-CGACATCCCCGTCAAGCTCAGCCTCCTCG 389 consensus_15269#0 TCAAGGCCAACGTGCTC--GGCATCACCCT-CGACATCCCCGTCAAGCTCAGCCTCCTCG 413 consensus_15269#3 TAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTG-TCATCATT-TGG 122 consensus_15269#2 TCAAANTANTGCGGCAAGNACGTCCCATAGTGG-TTCATCTG-TGCTTAAGCTACGTAAC 212 consensus_15269#4 -CAACTCACTGCGGNAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 57 consensus_15269#1 TCAACT-ACTGCGGCAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 446 consensus_15269#0 TCAACT-ACTGCGGCAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 470 consensus_15269#3 TCAATTAATGGAGGTTTTGTTCTCCA--AGGAATTCCATCCAATGGATACTCT-TTTAGA 179 *** * * ** *** ** * **** ** ** ** ** consensus_15269#2 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 272 consensus_15269#4 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 117 consensus_15269#1 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 506 consensus_15269#0 GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 530 consensus_15269#3 TTGAATTTGGCGTGTCTATGT-CTGGGTGTGGTTGT---CAATTTGCTTGCA-GTACGTT 234 * * ** ** * * ** ** * * ** ** ** ** **** * ** consensus_15269#2 T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 328 consensus_15269#4 TTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACT-NTGTTA- 175 consensus_15269#1 T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 562 consensus_15269#0 T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 586 consensus_15269#3 CTCGTAGTTTAATTGTAAGCAAGCAATTGTA-CGACCAAA-ATGTACTTAGGACAGTTAA 292 *** ** *** ** *** ** ** * * * ****** **** consensus_15269#2 TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTT 388 consensus_15269#4 TTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTT 235 consensus_15269#1 TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAA 622 consensus_15269#0 TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTT 646 consensus_15269#3 TTTGTTGGAAATTTCGGTGTGAATTATTTTTTAA------AATTTAAAAAAAAAAAAA-- 344 ** *** *** * * ** * * * * ** * **** * * consensus_15269#2 GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 448 consensus_15269#4 GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 295 consensus_15269#1 AA---------------------------------------------------------- 624 consensus_15269#0 GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 706 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 TTCTCCAAGGAATTGCATGCAATGGATACTCT---------------------------- 480 consensus_15269#4 TTCTCCAAAAACAAAAAAAAAAAAAAAA-------------------------------- 323 consensus_15269#1 ------------------------------------------------------------ consensus_15269#0 TTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTC 766 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 ------------------------------------------------------------ consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 ------------------------------------------------------------ consensus_15269#0 TGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATT 826 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 ------------------------------------------------------------ consensus_15269#4 ------------------------------------------------------------ consensus_15269#1 ------------------------------------------------------------ consensus_15269#0 GTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTT 886 consensus_15269#3 ------------------------------------------------------------ consensus_15269#2 --------------------- consensus_15269#4 --------------------- consensus_15269#1 --------------------- consensus_15269#0 TAAAAAAAAAATAAAAAAAAA 907 consensus_15269#3 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||