These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1177 fasta sequence [ACAAACGAGAGGTGTGTTTGGTAAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG-CGCCGCCT-CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT-GGTGGACC--ATATGCATTGTTTGCTGGT-AAAGATGCCA-GTAGGG-CGTTGGCGAAG-ATGTCCTTTGA-GCCACAAGAT-CTGACTG-ATGAT-AT-AT-CTGGCCTAAGTTTACTTGAACTCAGT-GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA-CAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCT-GTCGAT-GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA-TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA-AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCTGTTCGTCAATAATTTCATATTTCTACCTGCCCACAGAACCCCTTTTCTTGGTTACATGCTAATTCTTCATTCTTTCTTGTATTGCTCTCCATGCATTCTTGTAGCATTGTCCGCCATGCCATTATTGGAACAG] [+] EMBL C26842 [ACAAACGAGAGGTGTGTTTGGTAAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCNCTCGCCCAGCCGTCGTCGTCTTCGCGTNGCCGGCCGCCGCGC GC GCGNCGCCGCCTNCCTCCNTCTACCTCCCTGGTCGGCCTCTNCGCGGCGGCGGCGTCGTGCGATGCAGCG TNGGCCTGTAAGCGGTGGGATGATCTCGAAGA ] [+] EMBL AK121442 [ TAAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGGGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTCCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCTGTTCGTCAATAATTTCATATTT ] [+] EMBL AK098881 [ TAAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTCCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATG ] [+] EMBL AK061824 [ AAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTCCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCTGTTCGTCAATAATTTCATATTTCTACCTGCCCACAGAACCCCTTTTCTTGGTTACATGCTAATTCTTCATTCTTTCTTGTATTGCTCTCCATGCATTCTTGTAGCATTGTCCGCCATGCCATTATTGGAACAG] [+] EMBL AK060167 [ AAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTCCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCT ] [+] EMBL BF430820 [ GCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCTTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGCTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTTCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCACGACTGGGAGTACATGTTCAGCAGCAAGTACGTGAAagg ] [+] EMBL CF589244 [ TCTCGAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCTTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGCTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTCCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAGAAGAGGCAGCT GTCGAT GGTGAAGACAGCATC ] [+] EMBL CB676027 [ AAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCG CGCCGCCT CCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAGCGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGAGGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCAGTACGACGGGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCT GGTGGACC ATATGCATTGTTTGCTGGT AAAGATGCCA GTAGGG CGTTGGCGAAG ATGTCCTTTGA GCCACAAGAT CTGACTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGT GCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAAAGGAGGCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATC ] [+] EMBL OSS15102A [ ccgcnAAATGGCGACTTGCTCCGCTGCTTGCGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGC GCGG G CGCCGCCTNCCTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGGGCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGA NTGTGGGCGGCGGCGAGGAGCGCNTCGCCGGTGG GGTNATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGGGT ] [+] EMBL BM420267 [ gGGACCTGGGTGGACCCAATAAGCTTTGTTTCCTGGTAAAAGATCCCATTTAGGGCCTTTGCCGAAG ATGTCCTTTGACCCCACCAGATCCTGACTGAATGATAATAATCCTGCCCTAAGTTTACTTGAACTCAGT CCCCTTCAGGACTGGGAGTACAAGTTCA CAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAA CAGGGTGGCGATAGCACTGCCGATGC ATAGAGGAGGCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACCAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTC ATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCNGTTCGTCAATAAaaaaaaaa ] [+] EMBL BM420622 [ gcACC ATA GCCTTGTTTGCT GT AAAGATCCCC TTA GG C TTTGCGAAGTATGTCCTTTGA CCA GAGAT CTG CTG ATGAT AT AT CTGGCCTAAGTTTACTTGAACTCAGTGGCCCTTCAGGACTGGGAGTACAAGTTCANCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACCAGGGTGGCGATAGCACTGCCGATNCAATAGAGGAGNCAGCT GTCGAT GGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCACTGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCACAGAATTCCAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTC ATACTCAAGGATATGTTNCCGTAATGCCATGTTATTAGTTGGCTCTCCTGTTCGTCAATAAaaaaaaaa ] [+] EMBL AU101811 [ GTAGAA CAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCTCGTCGATCGGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCTGTTCGTCAATAATTTCATATTTCTACCTGCCaaaaa ] [+] EMBL CA998816 [ ggCGAT GGTGAAGACAGCATCCAGACTGCTAAGATGTCTAATCAATTATTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAAT ] [+] EMBL CA998827 [ AGACAGCATCCAGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATG ] [+] EMBL CA998834 [ AGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCA TGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCA AGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCAT ] [-] EMBL OSAA31658 [ ATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCTGTTCGTCAATAATTTCATA ] [-] EMBL AU225251 [ ccgCTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCaaaagcggc ] consensusID : consensus_15272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [GGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAAAGATGCCAGTAGGGCGTTGGCGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATATATCTGGCCTAAGTTTACTTGAACTCAGTGCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCTGTCGATGGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCATGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCAAGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTANNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA753925 [GGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAAAGATGCCAGTAGGGCGTTGGCGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATATATCTGGCCTAAGTTTACTTGAACTCAGTGCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGGGTGGCGATAGCACTGCCGATGCAATAGAGGAGGCAGCTGTCGATGGTGAAGACAGCATCCTGACTGCTAAGATGTCTAATCAATTACTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCATGAAGGCTTCAGGAGTTGAAAACTGAATTGCCTTCTAGCAGCTAACTTCACGCATCAAGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTANNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL OSAA31657 [ cTGCTCATGGCGATCAAGGGGCAGATCTATGACGTCTCCCAGAGCAGATTGTTCTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAAAGATGCCAGTAGGGCGTTGGCGAAAATGTCCTTTGAGCCACAAGATCTGACTGATGATATATCTGGCC ] consensusID : consensus_15272#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TGTTTTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAAAGATGCCAGTAGGGCGTTGGAGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATATATCTGGCCTAAGTTTACTTGAATTCAGTGCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTTGTAGAACAGGGTGGCGATATCACTGCCGATGCAATAGAGGAGGCAGCTGTCGATGGTGAAGACAGCATCCTGACTGGTAAGATGTCTAATCAATTCCTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCATGAAGGCTTCAGGAGTTGAAAATTGAATTGCCTTCTAGCAGCTAACTTCCCGCATCAAGAATTCAAGCCAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATATTGCATTACTGCTGTGGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCAGGTTATTAGTTGGCTGTCCTGTTCGTCAAAAAAAAAAAAAAAGGATAA] [-] EMBL CB676028 [TGTTTTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAAAGATGCCAGTAGGGCGTTGGAGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATATATCTGGCCTAAGTTTACTTGAATTCAGTGCCCTTCAGGACTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTTGTAGAACAGGGTGGCGATATCACTGCCGATGCAATAGAGGAGGCAGCTGTCGATGGTGAAGACAGCATCCTGACTGGTAAGATGTCTAATCAATTCCTATATGAGGAAGAAATGGAAGTCGGTAGTGATGATCCATGAAGGCTTCAGGAGTTGAAAATTGAATTGCCTTCTAGCAGCTAACTTCCCGCATCAAGAATTCAAGCCAAATAATCGCAGAATGATGTTTCATGAATTCATGTGTCTATAGGTGTAGATTACAAGAAGATATTGCATTACTGCTGTGGATTTCCCTTTGTCAATACTCAAGGATATGTTGCCGTAATGCCAGGTTATTAGTTGGCTGTCCTGTTCGTCAAAAAAAAAAAAAAAGGATAA] consensusID : consensus_15272#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [TAAGTTTACTTGAACTCAGTGCCCTTCAGGATCTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGGTGGCGATAGCACCGTGCCGAGTGCCATATAGAGGAGGCAGCTGTCGATGTGTGAAGACAGCATCCGTGACTGGCTGAAGATGGTGCTGAATGCTATTGACTGATGATGGAGGAAGAATGGGAAGTGCGGTGAGTGGATGGATGCCATGGAAGGCTTGCAGGGAGTGTGGAAACTGGAATGGCCTTGCTGAGCAGCTGATACTGTGCACGGCATG] [+] EMBL BI795471 [TAAGTTTACTTGAACTCAGTGCCCTTCAGGATCTGGGAGTACAAGTTCAGCAGCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGGTGGCGATAGCACCGTGCCGAGTGCCATATAGAGGAGGCAGCTGTCGATGTGTGAAGACAGCATCCGTGACTGGCTGAAGATGGTGCTGAATGCTATTGACTGATGATGGAGGAAGAATGGGAAGTGCGGTGAGTGGATGGATGCCATGGAAGGCTTGCAGGGAGTGTGGAAACTGGAATGGCCTTGCTGAGCAGCTGATACTGTGCACGGCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15272#0 ACAAACGAGAGGTGTGTTTGGTAAGCCTCGTCTCGAAATGGCGACTTGCTCCGCTGCTTG 60 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 CGCTCGCCCAGCCGTCGTCGTCTTCGCGTCGCCGGCCGCCGCGCGGCGGCGCGCCGCCTC 120 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 CTCCGTCTACCTCCCTGGTCGGCCTCTGCGCGGCGGCGGCGTCGTGCGATGCAGCGCTGG 180 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 GCCTGTAAGCGGTGGGATGATCTCGAAGAAGGTGGCGGAGCTGTGGGCGGCGGCGAGGAG 240 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 CGCGTCGCCGGTGGCGGTGATCGCCGCGGTGGCCGGAGCGGCGGTGGTCTACAAGGTGGG 300 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 GTCCAGTCTCCTCGCGCCGCCTCCTCCGCCGGCGAGGCCCCGGGAGGAGCCCAGCGAGGA 360 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 GGCCCCGCCGCCTCCGGAGCCGGTGCAGGTGGGGGAGATCACGGCGGAGGAGTTGCTGCA 420 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 GTACGACGGGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGA 480 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 --------GGTCCGACCCCGAGAAGCCGTTGCTCATGGCGATCAAGGGGCAGATCTATGA 52 consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 CGTCTCCCAGAGCAGATTGTTCTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAA 540 consensus_15272#2 -----------------TGTTTTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAA 43 consensus_15272#1 CGTCTCCCAGAGCAGATTGTTCTATGGACCTGGTGGACCATATGCATTGTTTGCTGGTAA 112 consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 AGATGCCAGTAGGGCGTTGGCGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATAT 600 consensus_15272#2 AGATGCCAGTAGGGCGTTGGAGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATAT 103 consensus_15272#1 AGATGCCAGTAGGGCGTTGGCGAAGATGTCCTTTGAGCCACAAGATCTGACTGATGATAT 172 consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 ATCTGGCCTAAGTTTACTTGAACTCAGTGCCCTTCAGGA-CTGGGAGTACAAGTTCAGCA 659 consensus_15272#2 ATCTGGCCTAAGTTTACTTGAATTCAGTGCCCTTCAGGA-CTGGGAGTACAAGTTCAGCA 162 consensus_15272#1 ATCTGGCCTAAGTTTACTTGAACTCAGTGCCCTTCAGGA-CTGGGAGTACAAGTTCAGCA 231 consensus_15272#3 --------TAAGTTTACTTGAACTCAGTGCCCTTCAGGATCTGGGAGTACAAGTTCAGCA 52 ************** **************** ******************** consensus_15272#0 GCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGGGTGGCGATAGCA 719 consensus_15272#2 GCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTTGTAGAACAGGGTGGCGATATCA 222 consensus_15272#1 GCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGGGTGGCGATAGCA 291 consensus_15272#3 GCAAGTACGTGAAGGTTGGAACCATAAAAAAGGTGCTCGTAGAACAGG-TGGCGATAGCA 111 ************************************* ********** ******** ** consensus_15272#0 C--TGCCGA-TGCAATA--GAGGAGGCAGCTGTCGATG-GTGAAGACAGCATCC-TGACT 772 consensus_15272#2 C--TGCCGA-TGCAATA--GAGGAGGCAGCTGTCGATG-GTGAAGACAGCATCC-TGACT 275 consensus_15272#1 C--TGCCGA-TGCAATA--GAGGAGGCAGCTGTCGATG-GTGAAGACAGCATCC-TGACT 344 consensus_15272#3 CCGTGCCGAGTGCCATATAGAGGAGGCAGCTGTCGATGTGTGAAGACAGCATCCGTGACT 171 * ****** *** *** ******************* *************** ***** consensus_15272#0 GCT--AAGATG--------TCTAATCAATTACTATATGAGGAAGAAATGGAAGT-CGGT- 820 consensus_15272#2 GGT--AAGATG--------TCTAATCAATTCCTATATGAGGAAGAAATGGAAGT-CGGT- 323 consensus_15272#1 GCT--AAGATG--------TCTAATCAATTACTATATGAGGAAGAAATGGAAGT-CGGT- 392 consensus_15272#3 GGCTGAAGATGGTGCTGAATGCTATTGACTGATGATGGAGGAAGAATGGGAAGTGCGGTG 231 * ****** * ** * * * ********* ****** **** consensus_15272#0 AGTGAT--GAT-CCATG-AAGGCTT-CAGGA---GTTGAAAACTGAATTGCCTTCT--AG 870 consensus_15272#2 AGTGAT--GAT-CCATG-AAGGCTT-CAGGA---GTTGAAAATTGAATTGCCTTCT--AG 373 consensus_15272#1 AGTGAT--GAT-CCATG-AAGGCTT-CAGGA---GTTGAAAACTGAATTGCCTTCT--AG 442 consensus_15272#3 AGTGGATGGATGCCATGGAAGGCTTGCAGGGAGTGTGGAAACTGGAATGGCCTTGCTGAG 291 **** *** ***** ******* **** ** **** **** ***** ** consensus_15272#0 CAGCTAACTTCACGCATCAAGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAAT 930 consensus_15272#2 CAGCTAACTTCCCGCATCAAGAATTCAAGCCAAATAATCGCAGAATGATGTTTCATGAAT 433 consensus_15272#1 CAGCTAACTTCACGCATCAAGAATTCAAGACAAATAATCGCAGAATGATGTTTCATGAAT 502 consensus_15272#3 CAGCTGATACTGTGCACGGCATG------------------------------------- 314 ***** * *** consensus_15272#0 TCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTT 990 consensus_15272#2 TCATGTGTCTATAGGTGTAGATTACAAGAAGATATTGCATTACTGCTGTGGATTTCCCTT 493 consensus_15272#1 TCATGTGTCTATAGGTGTAGATTACAAGAAGATACTGCATTACTGCTGTCGATTTCCCTT 562 consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 TGTCAATACTCAAGGATATGTTGCCGTAATGCCATGTTATTAGTTGGCTGTCCTGTTCGT 1050 consensus_15272#2 TGTCAATACTCAAGGATATGTTGCCGTAATGCCAGGTTATTAGTTGGCTGTCCTGTTCGT 553 consensus_15272#1 TGTCAATACTCAAGGATATGTTGCCGTANNNNNNNNNNNNNNNNNNNNNNNN-------- 614 consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 CAATAATTTCATATTTCTACCTGCCCACAGAACCCCTTTTCTTGGTTACATGCTAATTCT 1110 consensus_15272#2 CAAAAAAAAAAAAAAAGGATAA-------------------------------------- 575 consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 TCATTCTTTCTTGTATTGCTCTCCATGCATTCTTGTAGCATTGTCCGCCATGCCATTATT 1170 consensus_15272#2 ------------------------------------------------------------ consensus_15272#1 ------------------------------------------------------------ consensus_15272#3 ------------------------------------------------------------ consensus_15272#0 GGAACAG 1177 consensus_15272#2 ------- consensus_15272#1 ------- consensus_15272#3 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||