These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1581 fasta sequence [AGGAGGACGCCACGAGATCTGCAGCGAGAGAGAGCCAGCGAAGCGCGACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA-TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT-CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC-TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC-TTTTAACAACAGTCACGGTTGATGAG-TTTGGAACTCCAGGG-TTGAAATCAATTCTTAGTTTGGTAG-TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAA-GTGTTGGCCTGAATTCCAATCCTATGGT-TAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTG-TTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATA-CCTTGATTGCATCCTACTACC-ACCTGGTAAAGCACCA-TTCGAACACTGCCGTAGGAGCTGAGCTGT-CCCACAGCTT-CTCAA-GGAATGAGAG-CACAC-TGATC-TTTGGGTCCCAGCA-CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC-GCTAATC-ACCATCTCTGGTGAGGTTGAC-ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA-TTGAGTATGTTTTGCATCCTAGGAATTTTTCT-TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT-TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATCTCTGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTCGAAATTTTTTGGGGGGGGCCCGGACCCCATTTCCCCTTATAGGGAGCCGTTTTACCCCCCCTCATTGCCCGTTTTTTTACAACTTTGGAACGGGAAAACCCTTGCCGTTCCCCACTTTAATCCCTTTGAAGAAAATCCCCTTTTCGCCAGTGGGGTAAAAACAAAAAAGGCCCCAACCAATCCCCTTTCCAAAAATTTGCCCACCCTAATTGGCAAAGGGAACCCCCCTTGTACCGCCCCTTTAACCCGGGGGGGGGGGGGGTTTACCCCCAAGGGAACCTTTACATTGGCAAGG] [+] EMBL AK070745 [AGGAGGACGCCACGAGATCTGCAGCGAGAGAGAGCCAGCGAAGCGCGACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAA GTGTTGGCCTGAATTCCAATCCTATGGT TAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTG TTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATA CCTTGATTGCATCCTACTACC ACCTGGTAAAGCACCA TTCGAACACTGCCGTAGGAGCTGAGCTGT CCCACAGCTT CTCAA GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATCTCTGTGTTCCAc ] [+] EMBL AU095207 [ CGAGATCTGCAGCGAGAGAGAGCCAGCGAAGCAGAACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCT ] [+] EMBL AU165905 [ TGCAGCGAGAGAGAGCCAGCGAAGCG GACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGCTTGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATCTTTTTAACAACAGTCACGGTTGATGAGTTTTGGNACTCCAGGG TTGAAATCNATTCT ] [+] EMBL CF324529 [ CGAGAGAGAGCCAGCGAAGCGCGACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATAT ] [+] EMBL CA763927 [ gggggGAAGCGCGACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAA GTGTTGGCCTGAATTCCAATCCTATGGT TAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTG TTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAANTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGNGATACCCTTGATTGCATCCTACTACCNCCCTGGNAAAGCACCATTTCGAACACTGCCGTAGGAGCTGAGCTGTCCCCNCAGCTTCCTCAANGGAATGAGAGCCCCACTTGATCTTTTGGGTCCCGGGACCTTATTG ] [+] EMBL AK104055 [ GCGACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTTGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACTTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAACAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAA GTGTTGGCCTGAATTCCAATCCTATGGT TAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTG TTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATA CCTTGATTGCATCCTACTACC ACCTGGTAAAGCACCA TTCGAACACTGCCGTAGGAGCTGAGCTGT CCCACAGCTT CTCAA GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATC ] [+] EMBL AK104419 [ TTAACCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAA GTGTTGGCCTGAATTCCAATCCTATGGT TAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTG TTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATA CCTTGATTGCATCCTACTACC ACCTGGTAAAGCACCA TTCGAACACTGCCGTAGGAGCTGAGCTGT CCCACAGCTT CTCAA GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATCTC ] [+] EMBL OSC468 [ CCGCCTTCGCCGCCGCCGCCGCGANTATCGATCCCCTCCCTCTCGCCGTCGACGCCGT GG ATGCCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGGACTTCAGGGTTTGAAATCAATTCTTAGTTTTGTAGTTTCCAGACCAGA GT AGGGGAGNTTGAACTTCAGTACCTTCAT ] [+] EMBL AU070065 [ CCGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGT GGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTTGGACTTCAGGGTTTGAAATCAATTCTTAGTTTNGTAG TTCCAGACCAGAGGTAAGGG AGNTTTGACTTCAGTACCTTCATG ATATGCTGGCATC ATTCAA GTGTTNGCCTGAATTCC AT CTATG ] [+] EMBL OSA251563 [ CGCCTTCGCCGCCGCCGCCGCGA TATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAA GTGTTGGCCTGAATTCCAATCCTATGGT TAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTG TTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATA CCTTGATTGCATCCTACTACC ACCTGGTAAAGCACCA TTCGAACACTGCCGTAGGAGCTGAGCTGT CCCACAGCTT CTCAA GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATAaaaaaa ] [+] EMBL CF312684 [ CCTCCCTCTCGCCGTCGACGCCGTCGGCAT CCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCTAGGGCGTCACTATCACAGC TGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATC TTTTAACAACAGTCACGGTTGATGAG TTTGGAACTCCAGGG TTGAAATCAATTCTTAGTTTGGTAG TTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAANGTGTTGGCCTGAATTCCAATCCTATGGTNTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTGTTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAAC ATCATGGTGATC CCTTGATTGCATCCTACTACC ACCTGGTAAA ] [+] EMBL C99220 [ TGAACAATCATGGTGATA CCTTGATTGCATCCTACTACC ACCTGGTAAAGCACCA TTCGAACACTGCCGTAGGAGCTGAGCTGT CCCACAGCTT CTCAA GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATAaaaaaa ] [+] EMBL BI797004 [ CTGT CCCTCAGCTT CTCAA GGAATGAGAG CACTC TGATC TTTGGGTCCCA CA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGGGCGCTCGTCCAGCATGAATGGCGTCCCCAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACC TTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGCCAAACATTAGCCTTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTC AATATGATGGAGATATCTCTGTGTTCCCAAAAAAAAAA ] [+] EMBL AU095206 [ T CTCAA GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATCTCTGTGTTCCAAAAAAA ] [+] EMBL AU030943 [ GGAATGAGAG CACAC TGATC TTTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC NCCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATCTCTGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU182905 [ TTGGGTCCCAGCA CTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATC GCTAATC ACCATCTCTGGTGAGGTTGAC ACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCA TTGAGTATGTTTTGCATCCTAGGAATTTTTCT TCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATAaaaaaa ] [+] EMBL BQ908653 [ gcgtccgATGGCGTCCCAAATCGGCTAATCAACCATCTCTGGTGAGGTTGACAACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCATTTGAGTATGTTTTGCATCCTAGGAATTTTTCTGTCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTA GCAAACATTAGCATTGGCTATATATTTTNTATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATAaaaa ] [+] EMBL CA758239 [ TGGCTTCATTTTGATCTTGAGTTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTT TATCCTCGGCGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGATATCTCTGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTCGAAATTTTTTGGGGGGGGCCCGGACCCCATTTCCCCTTATAGGGAGCCGTTTTACCCCCCCTCATTGCCCGTTTTTTTACAACTTTGGAACGGGAAAACCCTTGCCGTTCCCCACTTTAATCCCTTTGAAGAAAATCCCCTTTTCGCCAGTGGGGTAAAAACAAAAAAGGCCCCAACCAATCCCCTTTCCAAAAATTTGCCCACCCTAATTGGCAAAGGGAACCCCCCTTGTACCGCCCCTTTAACCCGGGGGGGGGGGGGGTTTACCCCCAAGGGAACCTTTACATTGGCAAGG] consensusID : consensus_15277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1075 fasta sequence [GCAATTCAGTACAATTGCGGTTCAGCATGTCTGCGCATTTGATTTGTGCTTTCTATGTTAATGATTTTTGTTTGTACTGCAGACTATCACAGCTGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATCTTTTAACAACAGTCACGGTTGATGAGTTTGGAACTCTAGGGTTGAAATCAATTCTTAGTTTGGTAGTTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAANGTGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTGTTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGTAAGTATTGATTCTATGCATGGTTATCATATATTAGCACTGCATGTTACTTCCAAGTCTGACTGAGAAGCCAATTCCAGAATAACATTTCTTGTTTACTGGTTGTTGTGGTCATTACTCCTGTATCAGTTTATTTAGTTTGGTAACTTACCTTACAATTCCTGTCCAGGAACAATCATGGTGATACCTTGATTGCATCCTACTACCACCTGGTAAAGCACCATTCGAACACTGCCGTAGGAGCTGAGCTGTCCCACAGCTTCTCAAGGAATGAGAGCACACTGATCTTTGGGTCCCAGCACTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATCGCTAATCACCATCTCTGGTGAGGTTGACACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCATTGAGTATGTTTTGCATCCTAGGAATTTTTCTTCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCAAAAAAA] [+] EMBL CF315048 [GCAATTCAGTACAATTGCGGTTCAGCATGTCTGCGCATTTGATTTGTGCTTTCTATGTTAATGATTTTTGTTTGTACTGCAGACTATCACAGCTGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATCTTTTAACAACAGTCACGGTTGATGAGTTTGGAACTCTAGGGTTGAAATCAATTCTTAGTTTGGTAGTTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAANGTGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTGTTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGTAAGTATTGATTCTATGCATGGTTATCATATATTAGCACTGCATGTTACTTCCAAGTCTGACTGAGAA ] [-] EMBL CF315049 [ TATTGATTCTATGCATGGTTATCATATATTAGCACTGCATGTTACTTCCAAGTCTGACTGAGAAGCCAATTCCAGAATAACATTTCTTGTTTACTGGTTGTTGTGGTCATTACTCCTGTATCAGTTTATTTAGTTTGGTAACTTACCTTACAATTCCTGTCCAGGAACAATCATGGTGATACCTTGATTGCATCCTACTACCACCTGGTAAAGCACCATTCGAACACTGCCGTAGGAGCTGAGCTGTCCCACAGCTTCTCAAGGAATGAGAGCACACTGATCTTTGGGTCCCAGCACTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATCGCTAATCACCATCTCTGGTGAGGTTGACACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCATTGAGTATGTTTTGCATCCTAGGAATTTTTCTTCAGTTCTTGTGGATTGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCAAAAAAA] consensusID : consensus_15277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [AGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAAGTGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTGTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATACCTTGATTGCATCCTACTACCACCTGGTAAAGCACCATTCGGACACTGCCGTAGGAGCTTGAGCTGTNCCACAGCTTCTTCAAGGAATGAGGGGCACACTTGATCTTTTGGGGTCCCAGCACTTATTTNGACCCCTCACACGGCAAGTAAAGGNTTGGTTTTAACAACCTTATNGGAATTNGCCNGCGGGGTTTGTCCAGCAATTGAANTGNGGGTCCNAAATNTGNTAATTANCAATTTTTTTGGTGNGGGTTTNAACCAAAGGAAATTTNTGATGGGGACNGAAAGNTTGGGTTTTCCNTTNGNGTTNNGATTNAGNATTGTTTTTAANCCTTGGGTTTTTTTAAGACTTTTNTGNTTTGGNNNNATTTNAAAAANTTNGNCNTNGTNCNTTTNGGNTATTNTNNCTTGNNNNTTNCNNCNNNTTNTTTGGAATNNCNGTTNGATTNTNTTTTTTGNGGNNGTNNNTNTTNGGGGTTNCGNTTTTGNNTNTTTTT] [+] EMBL D43349 [AGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAAGTGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTGTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATACCTTGATTGCATCCTACTACCACCTGGTAAAGCACCATTCGGACACTGCCGTAGGAGCTTGAGCTGTNCCACAGCTTCTTCAAGGAATGAGGGGCACACTTGATCTTTTGGGGTCCCAGCACTTATTTNGACCCCTCACACGGCAAGTAAAGGNTTGGTTTTAACAACCTTATNGGAATTNGCCNGCGGGGTTTGTCCAGCAATTGAANTGNGGGTCCNAAATNTGNTAATTANCAATTTTTTTGGTGNGGGTTTNAACCAAAGGAAATTTNTGATGGGGACNGAAAGNTTGGGTTTTCCNTTNGNGTTNNGATTNAGNATTGTTTTTAANCCTTGGGTTTTTTTAAGACTTTTNTGNTTTGGNNNNATTTNAAAAANTTNGNCNTNGTNCNTTTNGGNTATTNTNNCTTGNNNNTTNCNNCNNNTTNTTTGGAATNNCNGTTNGATTNTNTTTTTTGNGGNNGTNNNTNTTNGGGGTTNCGNTTTTGNNTNTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15277#0 AGGAGGACGCCACGAGATCTGCAGCGAGAGAGAGCCAGCGAAGCGCGACTCCGTTTTAAC 60 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 CGCCTTCGCCGCCGCCGCCGCGATATCGATCCCCTCCCTCTCGCCGTCGACGCCGTCGGC 120 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 ATCCATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAG 180 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ---------------------------------GCAATTCAGTACAATTGCGGTTCAGCA 27 consensus_15277#0 GGACTACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTAT 240 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 TGTCTGCGCATTTGATTTGTGCTTTCTATGTTAATGATTTTTGTTTGTACTGCAGACTAT 87 consensus_15277#0 CACAGCTGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAA 300 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 CACAGCTGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAA 147 consensus_15277#0 GAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATCTTTTAACAACAGT 360 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 GAACAAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATCTTTTAACAACAGT 207 consensus_15277#0 CACGGTTGATGAGTTTGGAACTCCAGGGTTGAAATCAATTCTTAGTTTGGTAGTTCCAGA 420 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 CACGGTTGATGAGTTTGGAACTCTAGGGTTGAAATCAATTCTTAGTTTGGTAGTTCCAGA 267 consensus_15277#0 CCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAAG 480 consensus_15277#2 ----AGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAAG 56 consensus_15277#1 CCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAAN 327 ******************************************************* consensus_15277#0 -TGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGC 539 consensus_15277#2 -TGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGC 115 consensus_15277#1 GTGTTGGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGC 387 *********************************************************** consensus_15277#0 TCTCAGTTGGTGTT-GATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAAT 598 consensus_15277#2 TCTCAGTTGGTGTT-GATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAAT 174 consensus_15277#1 TCTCAGTTGGTGTTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAAT 447 ************** ********************************************* consensus_15277#0 GCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTG------------ 646 consensus_15277#2 GCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTG------------ 222 consensus_15277#1 GCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGTAAGTATTGATT 507 ************************************************ consensus_15277#0 ------------------------------------------------------------ consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 CTATGCATGGTTATCATATATTAGCACTGCATGTTACTTCCAAGTCTGACTGAGAAGCCA 567 consensus_15277#0 ------------------------------------------------------------ consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ATTCCAGAATAACATTTCTTGTTTACTGGTTGTTGTGGTCATTACTCCTGTATCAGTTTA 627 consensus_15277#0 -------------------------------------AACAATCATGGTGATACCTTGAT 669 consensus_15277#2 -------------------------------------AACAATCATGGTGATACCTTGAT 245 consensus_15277#1 TTTAGTTTGGTAACTTACCTTACAATTCCTGTCCAGGAACAATCATGGTGATACCTTGAT 687 *********************** consensus_15277#0 TGCATCCTACTACCACCTGGTAAAGCACCATTCGAACACTGCCGTAGGAGCT-GAGCTGT 728 consensus_15277#2 TGCATCCTACTACCACCTGGTAAAGCACCATTCGGACACTGCCGTAGGAGCTTGAGCTGT 305 consensus_15277#1 TGCATCCTACTACCACCTGGTAAAGCACCATTCGAACACTGCCGTAGGAGCT-GAGCTGT 746 ********************************** ***************** ******* consensus_15277#0 CCCACAGCTTCT-CAAGGAATGAGAG-CACACT-GATCTTT--GGGTCCCAGCACTCATT 783 consensus_15277#2 NCCACAGCTTCTTCAAGGAATGAGGGGCACACTTGATCTTTTGGGGTCCCAGCACTTATT 365 consensus_15277#1 CCCACAGCTTCT-CAAGGAATGAGAG-CACACT-GATCTTT--GGGTCCCAGCACTCATT 801 *********** *********** * ****** ******* ************* *** consensus_15277#0 GGA--CCCTCACACGACA-GTGAAGGCTCG-CTTCAACAAC--TATGGCA--TGGCCAGC 835 consensus_15277#2 TNGACCCCTCACACGGCAAGTAAAGGNTTGGTTTTAACAACCTTATNGGAATTNGCCNGC 425 consensus_15277#1 GGA--CCCTCACACGACA-GTGAAGGCTCG-CTTCAACAAC--TATGGCA--TGGCCAGC 853 ********** ** ** **** * * ** ****** *** * * * *** ** consensus_15277#0 GCG-CTCGTCCAGCA--TGAATGGCG--TCCCAAATC-GCTAATCACCA---TCTCTGGT 886 consensus_15277#2 GGGGTTTGTCCAGCAATTGAANTGNGGGTCCNAAATNTGNTAATTANCAATTTTTTTGGT 485 consensus_15277#1 GCG-CTCGTCCAGCA--TGAATGGCG--TCCCAAATC-GCTAATCACCA---TCTCTGGT 904 * * * ******** **** * * *** **** * **** * ** * * **** consensus_15277#0 GAGG-TTGACACCAAGGCAA----TTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGC 941 consensus_15277#2 GNGGGTTTNAACCAAAGGAAATTTNTGATGGGGACNGAAAGNTTGGGTTTTCCNTTNGNG 545 consensus_15277#1 GAGG-TTGACACCAAGGCAA----TTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGC 959 * ** ** ***** * ** *** * * ** **** ** *** * consensus_15277#0 TCAAGCATTGAGTATGTTTTGCATCCTAGGAATTTTTCTTCAGTTCTTGTGGATTGGAAT 1001 consensus_15277#2 TTNNG-ATTNAGNATTGTTTTTAANCCTTGGGTTTTTTTAAGACTTTTNTGNTTTGGNNN 604 consensus_15277#1 TCAAGCATTGAGTATGTTTTGCATCCTAGGAATTTTTCTTCAGTTCTTGTGGATTGGAAT 1019 * * *** ** ** *** * * * ***** * * ** ** **** consensus_15277#0 AACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAGTTCTTT 1061 consensus_15277#2 NATTT--NAAAAANTTNGNCNTNGTN--CNTTTNGGNT--ATTNTNNCTT---GNNNNTT 655 consensus_15277#1 AACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCAAAAAAA---- 1075 * * ***** * * * * * ** ** * *** * consensus_15277#0 CCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTTTATCCTCGGCGCCTG 1121 consensus_15277#2 NCNNCNNNTTNTTTGGAATNNCNGTTNG-ATT--NTNTTTTTTGNGGNNGTNNNTNTTNG 712 consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 TTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGATGGAGA 1181 consensus_15277#2 GGGTTN-CGNTTTTGNNTNTTTTT------------------------------------ 735 consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 TATCTCTGTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1241 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTCGAAATTTTTTGGGGG 1301 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 GGGCCCGGACCCCATTTCCCCTTATAGGGAGCCGTTTTACCCCCCCTCATTGCCCGTTTT 1361 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 TTTACAACTTTGGAACGGGAAAACCCTTGCCGTTCCCCACTTTAATCCCTTTGAAGAAAA 1421 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 TCCCCTTTTCGCCAGTGGGGTAAAAACAAAAAAGGCCCCAACCAATCCCCTTTCCAAAAA 1481 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 TTTGCCCACCCTAATTGGCAAAGGGAACCCCCCTTGTACCGCCCCTTTAACCCGGGGGGG 1541 consensus_15277#2 ------------------------------------------------------------ consensus_15277#1 ------------------------------------------------------------ consensus_15277#0 GGGGGGGTTTACCCCCAAGGGAACCTTTACATTGGCAAGG 1581 consensus_15277#2 ---------------------------------------- consensus_15277#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||