These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1099 fasta sequence [ATTGCAAGCCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA-ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT-GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATAGGTTCT] [+] EMBL AK060324 [ATTGCAAGCCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTAT ] [+] EMBL AK070200 [ CCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCATCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATTGGTTCT] [+] EMBL CF290827 [ TGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATTATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGGTGAAGGAACTTCAGAAACACGGTAGTCCA ] [+] EMBL OSAA31895 [ ACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACACACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTC ] [-] EMBL CF290828 [ CGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAAaaaaaaaa] [+] EMBL CA763807 [ ACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGCGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTT ] [-] EMBL OSAA31896 [ CTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGCGAAAATNTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATgtg ] consensusID : consensus_15284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1080 fasta sequence [GGATCAACAGACTCGAGTAGGG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC-TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT-GTCGGTGCATCATTTTTATCACAAACATT-GGCTTTGGAGGACTCAACAATAGT-GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG-TTGTCTACGACATAACTAGT-CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC-AAAAACATGGTAGTCCTGATATTAT-CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT-CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT-CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT-CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA--ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTAAAAACACCACACCAAAGTTTCATCTAAACAAGTACTCCGTGTACAATTGCAAAAAAAAAAAA] [+] EMBL AK121527 [GGATCAACAGACTCGAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAA ] [+] EMBL C73501 [ GATCAACAGACTCGAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTTGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTNCAAGGTAACT GTCGGTGCATCATTNTTATCACAAACATTGGGCTTTGGAGGGCTCAACAATAGTGGAAATTTG ] [+] EMBL CF297755 [ ACAGACTCGAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGG ] [+] EMBL CF281881 [ CGAGTAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACTGGTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAG ] [+] EMBL AK105389 [ GAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCT ] [+] EMBL C97344 [ AAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTANTCCTGATATT ] [+] EMBL AB032761 [ AAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATAAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTAAAAA ] [+] EMBL C99985 [ TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTAATATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTT ] [+] EMBL AU165731 [ GCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT G CGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCACCAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAaaaa ] [-] EMBL CA759389 [ ACTCACCAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGNTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTACACCCACCACACCAAAGTTTCATCTAAACAAGTACTCCGTGTACAATTGCAAAAAAAAAAAA] [+] EMBL C97345 [ CTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTTTGTCTACGACATAACTAGTCCCAGATCCATTTAGCNAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTATCCATGGTTTTGGTTGGTNATAAAGCTGATCTACATAAAAATCGACATGTATCTTCTCCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTACAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTAAAAA ] [-] EMBL CF297756 [ TTTAGCAAAGCACAATACTGGGTGAAGGAACTTCAAAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATANAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAA ] consensusID : consensus_15284#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [AAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTCCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF281882 [AAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTCCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15284#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [AATNGAGGGAAATNCGAAAAGGGTGCCCCAGGCCCACCCCCATCCTTGAATCCTGAATGGGTACTTANCCAGGAAACAGGCTGGCCAACTGTGNTATGGACCACCACCAGGTAAAGCTCTGGAATGCCCATGGTTGGNAAATNCACCAACTGTCATGTAAAGNAACTACTTTGTCCCTTGCTGCTTCTGGTTCCCAGCTTGGGNCAAGTGAGCTCAGTGTTTTTGCTCAGCNCNAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCANTATGCTGCAGGAANTNACCGTTTCCTGTAAAAAAAAAAA] [+] EMBL AU166624 [AATNGAGGGAAATNCGAAAAGGGTGCCCCAGGCCCACCCCCATCCTTGAATCCTGAATGGGTACTTANCCAGGAAACAGGCTGGCCAACTGTGNTATGGACCACCACCAGGTAAAGCTCTGGAATGCCCATGGTTGGNAAATNCACCAACTGTCATGTAAAGNAACTACTTTGTCCCTTGCTGCTTCTGGTTCCCAGCTTGGGNCAAGTGAGCTCAGTGTTTTTGCTCAGCNCNAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCANTATGCTGCAGGAANTNACCGTTTCCTGTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15284#0 ATTGCAAGCCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAG 60 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ------------------------------------------------------------ consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 AAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCC 120 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ------------------------------------------------------------ consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 GCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGC 180 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ------------------------------------------------------------ consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 CATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAA 240 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ---------GGATCAACAGACTCGAGTAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 51 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 CGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTC 300 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 AGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACC 111 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 AGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTC 360 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 GACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGA 171 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 AAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACAAC 420 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 TGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACG 231 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 AGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCT 480 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ATAACTCCGCTACTGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTG 291 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 TTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATT 540 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 GTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCA 351 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 TAACAAGGCACAATACTGGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCAT 600 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 AGGTAACTGTCGGTGCATCATTTTTATCACAAACATTGGCTTTGGAGGACTCAACAATAG 411 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 GGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGC 660 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 TGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTT 471 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 ACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGA 720 consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ACTACAGAGGAGCTGCTGCTGCAGTTGTTGTCTACGACATAACTAGTCCAGAATCATTTA 531 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 TAACATAAACCAACTATTCGAGGAAATTGCGAAGAG--GTTGCCCAGG--CCAACACCAT 776 consensus_15284#3 ---------------AATNGAGGGAAATNCGAAAAG--GGTGCCCCAGGCCCACCCCCAT 43 consensus_15284#1 GCAAAGCACAATACTGGGTGAAGGAACTTCAAAAACATGGTAGTCCTGATATTATCATGG 591 consensus_15284#2 -------------------------------AAAACATGGTAGTCCTGATATTATCATGG 29 ** * * * * * consensus_15284#0 CCTGAATTCCTGA-TTGGTAACTGACCCAGGAAACAGGCTGGC-AACTGTGTATTGTACA 834 consensus_15284#3 CCTTGAATCCTGA-ATGGGTACTTANCCAGGAAACAGGCTGGCCAACTGTGNTATGGACC 102 consensus_15284#1 TTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCAC 651 consensus_15284#2 TTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCAC 89 * * * * * * * * *** * * * * * consensus_15284#0 AC-AGCAGTAAAAGCTC--TGTA-TGCACATTGTTTGGAAATGCAA-----CAACTG-TC 884 consensus_15284#3 ACCACCAGGTAAAGCTC--TGGAATGCCCATGGTTGGNAAATNCAC-----CAACTG-TC 154 consensus_15284#1 AAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATA 711 consensus_15284#2 AAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATA 149 * * * * ** * ** * * * ** ** *** * consensus_15284#0 ATGTAAAGCAACTACTT--------TGCTCCTTGCTGCTTCTG-TTTCCAGC-TTGG-TC 933 consensus_15284#3 ATGTAAAGNAACTACTT--------TGTCCCTTGCTGCTTCTGGTTCCCAGC-TTGGGNC 205 consensus_15284#1 ATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGAT 771 consensus_15284#2 ATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGAT 209 ** **** ** ** ** ** * * * * * ** * consensus_15284#0 AAGTGAGCTCAGTGTTT-------T-GCTCA-GCACAAGCTGATAGGCTATACG---CAT 981 consensus_15284#3 AAGTGAGCTCAGTGTTT-------TTGCTCA-GCNCNAGCTGATAGGCTATACG---CAT 254 consensus_15284#1 AATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACAT 831 consensus_15284#2 AATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACAT 269 ** * ** ****** * * ** * ***** ** * * * *** consensus_15284#0 GGCCACATGGTCATTAGCAGTTGCATTAT--GCTGCAGGAATTTAACCGTTTCCTGTGAA 1039 consensus_15284#3 GGCCACATGGTCATTAGCAGTTGCANTAT--GCTGCAGGAANTNA-CCGTTTCCTGTAAA 311 consensus_15284#1 GTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACA 891 consensus_15284#2 GTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTCCA 329 * * ** ** * * * ** * * ** * * * * **** * consensus_15284#0 AATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATAGGTTCT 1099 consensus_15284#3 AA----AAAAAA------------------------------------------------ 319 consensus_15284#1 GTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTAATAGTGCCGTCGTGTAAC 951 consensus_15284#2 GTTTAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 359 * consensus_15284#0 ------------------------------------------------------------ consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 ATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGC 1011 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 ------------------------------------------------------------ consensus_15284#3 ------------------------------------------------------------ consensus_15284#1 CTGTGTAAAAACACCACACCAAAGTTTCATCTAAACAAGTACTCCGTGTACAATTGCAAA 1071 consensus_15284#2 ------------------------------------------------------------ consensus_15284#0 --------- consensus_15284#3 --------- consensus_15284#1 AAAAAAAAA 1080 consensus_15284#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||