These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1207 fasta sequence [GTAGAAAAAGAAAATACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGA-TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGGGCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT] [+] EMBL CF339250 [GTAGAAAAAGAAAATACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGA ] [+] EMBL CF338252 [ ACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGATTAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGNCC ] [+] EMBL AK067858 [ CGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACAT ] [+] EMBL AK060030 [ AGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCACCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGAT ] [+] EMBL AK106030 [ AGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGTTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGGGCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT] [+] EMBL AK061467 [ AGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGTTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGGGCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT] [+] EMBL CB618715 [ AGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAG ] [+] EMBL OSS2384A [ AGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTNATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGC ] [+] EMBL OSS3369A [ AGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGNCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGNCCGGNTCCTTCCTCCTCGACCTCAAGACCCACTNCAAGGATGTGCGCTTNCAATTCATGAACTCCGNGCTGCTGCTCGACCGNCGCGTCAG CTCACCTACACGGACTCCACCACCCTCTCCCCGGGNCC ] [+] EMBL AU083429 [ GCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAG CTCACCTACACG ] [+] EMBL AU173124 [ CACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCC ] [-] EMBL CB618716 [ CAGCCTCACNTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTTGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATA ] [+] EMBL AU173125 [ AGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCAaaaa ] consensusID : consensus_15304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 863 fasta sequence [CGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT-CTGT-CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNAANNNNNAAAAANANNNNNNNNNNGGGGGGGGGGGGGGGGGGAAAAAANNNAANNAAAGGGGGAAAATTAANNGGCCGGAAGGGGGGGGGNNNNAAAAAAAAGGGGGGGAGAGGGAAAAAAGGGGGGANAAAAAAAAAAAAANNNAAAAGAAAAGAGAAANNNANNNGAAGAGGGGGAGAAAAAAAAAGAGGGGGGCGGGGGGGGGNNNNGAAAAAAAGGGGGGAAANNGAGAGGGGAAAAGGGGCCCCCCCNAGNNNNGGNANNAAAAAGCGCGGGGGGGGTGCGGGGACC] [+] EMBL CA756827 [CGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNAANNNNNAAAAANANNNNNNNNNNGGGGGGGGGGGGGGGGGGAAAAAANNNAANNAAAGGGGGAAAATTAANNGGCCGGAAGGGGGGGGGNNNNAAAAAAAAGGGGGGGAGAGGGAAAAAAGGGGGGANAAAAAAAAAAAAANNNAAAAGAAAAGAGAAANNNANNNGAAGAGGGGGAGAAAAAAAAAGAGGGGGGCGGGGGGGGGNNNNGAAAAAAAGGGGGGAAANNGAGAGGGGAAAAGGGGCCCCCCCNAGNNNNGGNANNAAAAAGCGCGGGGGGGGTGCGGGGACC] [-] EMBL CF328202 [ GTTTCAAGGAGGGGATGCCATCAAGGCCACTTACCAAGCTTCCACCAAGTTCTTGGCCCTGGATTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT TTGACCAAAGCAAAGCGCCAAAGTTAATAGCGGAGAGCACGTGGAATTACGAGATTTGATTGCTTTTTTTAGGAGGCAGGCAATTCCTGTTTAAGAAGCACCCTTGTCAAACTGGTTGTCTTGTACTTGGGAACTATTCTTTTTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGTTACGGCATTGACAATGAACCCCGATTATTTTTTACTATATTTTTTAAGGCACATGATATGATTGACCAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU183233 [ AGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAANAAGCACCCNTGTCANACTGGTTGTCTTGNACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAANACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGANCAAAAAAAAAAAAAAAAAA ] [+] EMBL AU083430 [ CCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU097138 [ CGCAGCGTCATTTGATCCTGTCCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAA ] [-] EMBL D42509 [ GAATTACGAGATCTGATTG CNCNNCTAGGA GCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTCGTACTTGGG ACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATA ] consensusID : consensus_15304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence [ATTGTATGTGTTAGCTCATGCATCAACAACCCTTAATGATATGGATGGGTTTTGGGCCGGCTTAAGAGTCAGCCTTCATGACATGCCTTAACTGATACTGGTACAGAAGGGTGCTGACTTTATTCTAACTTATCTAAAGAAGACTATCTTCCTATATCTCAGTCTCACACAGAGAGACCATGATATGTGCCACAATGCAATATCGTAATTCTGTGACCATATTGTGCTATTGATGGCAAAGAACAAATATTTGGCTAGTTATATTGATTTGTTGCCTGCTTGTTTGAGTTCATTTAACAAAGAATGTCAATAGTACTTTTTGTTCAAAAAGGTACCCATGCAACCCTGCTTAAATCCGCAACAAGGCACTGGTGTGCTGTCTGACTAGCTCCTTCCGAACATTGAAAGCAACTTGCTATGCTATTTTCACTATAGATGTTTGTAGAGGTACTCTTATAGCTACCGACCATGTTTTTCATCTTGACCATGTTATGCTTCTCTCTTCAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACGTATATTCTCTAATGCACATGATATGATTGACCAAAAAAAAAGA] [-] EMBL CB635563 [ATTGTATGTGTTAGCTCATGCATCAACAACCCTTAATGATATGGATGGGTTTTGGGCCGGCTTAAGAGTCAGCCTTCATGACATGCCTTAACTGATACTGGTACAGAAGGGTGCTGACTTTATTCTAACTTATCTAAAGAAGACTATCTTCCTATATCTCAGTCTCACACAGAGAGACCATGATATGTGCCACAATGCAATATCGTAATTCTGTGACCATATTGTGCTATTGATGGCAAAGAACAAATATTTGGCTAGTTATATTGATTTGTTGCCTGCTTGTTTGAGTTCATTTAACAAAGAATGTCAATAGTACTTTTTGTTCAAAAAGGTACCCATGCAACCCTGCTTAAATCCGCAACAAGGCACTGGTGTGCTGTCTGACTAGCTCCTTCCGAACATTGAAAGCAACTTGCTATGCTATTTTCACTATAGATGTTTGTAGAGGTACTCTTATAGCTACCGACCATGTTTTTCATCTTGACCATGTTATGCTTCTCTCTTCAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACGTATATTCTCTAATGCACATGATATGATTGACCAAAAAAAAAGA] consensusID : consensus_15304#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [TCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAACCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCTAGGTCCCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACCAGATCTGATTGCCTCTTCTACGAGGCAGGCAACTCCTGCTTAATAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACTCCTGCAACCC] [+] EMBL CB678809 [TCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAACCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCTAGGTCCCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACCAGATCTGATTGCCTCTTCTACGAGGCAGGCAACTCCTGCTTAATAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACTCCTGCAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15304#0 GTAGAAAAAGAAAATACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCG 60 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 CAAGGAGGATAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAG 120 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 GCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTC 180 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 ACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGC 240 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 ---------------------------------ATTGTATGTGTTAGCTCATGCATCAAC 27 consensus_15304#0 GGGCCCTCCCTCGAGGGCCTCATCCTCACCC--TCGAGAAGCCCGGCTCCTT--CCTCCT 296 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 AACCCTTAATGATATGGATGGGTTTTGGGCCGGCTTAAGAGTCAGCCTTCATGACATGCC 87 consensus_15304#0 CGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCT 356 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 TTAACTGATACTGGTACAGAAGGGTGCTGACTTTATTCTAACTTATCTAAAGAAGACTAT 147 consensus_15304#0 CGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAA 416 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 CTTCCTATATCTCAGTCTCACACAGAGAGACCATGATATGTGCCACAATGCAATATCGTA 207 consensus_15304#0 GCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAG 476 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 ATTCTGTGACCATATTGTGCTATTGATGGCAAAGAACAAATATTTGGCTAGTTATATTGA 267 consensus_15304#0 CCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCA 536 consensus_15304#3 -------------------------------------------TCCTACGCGCACGGCCA 17 consensus_15304#1 ------------------------------------------------------------ consensus_15304#2 TTTGTT------GCCTGCTTGTTTGAGTTCATTTAACAAAGAATGTCAATAGTACTTTTT 321 consensus_15304#0 AGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGC 596 consensus_15304#3 AGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGC 77 consensus_15304#1 ------------------------------------CGCTAACAACGCCTGGGACTTCGC 24 consensus_15304#2 GTTCAAAAAGGTACCCATGCAACCCTGCTTAAAT-CCGC-AACAAGGCACTGGTGTGCTG 379 *** ***** ** ** * * consensus_15304#0 CGTCACCCGCAAGTTTCAAGGAGGGGATGCCAT---CAAGGCCACCTAC----CAAGCCT 649 consensus_15304#3 CGTCACCCGCAAGTTTCAAGGAGGGGATGCCAT---CAAGGCCACCTAC----CAAACCT 130 consensus_15304#1 CGTCACCCGCAAGTTTCAAGGAGGGGATGCCAT---CAAGGCCACCTAC----CAAGCCT 77 consensus_15304#2 TCTGACTAGCTCCTTCCGAACATTGAAAGCAACTTGCTATGCTATTTTCACTATAGATGT 439 * ** ** ** * * * * * ** * * * ** * * * * * consensus_15304#0 CCACCAAGCTCCTC-----GCCCTCGACTGGACCAGGGACT----CCAAGATCGGTGCCT 700 consensus_15304#3 CCACCAAGCTCCTC-----GCCCTCGACTGGACCAGGGACT----CCAAGATCGGTGCCT 181 consensus_15304#1 CCACCAAGCTCCTC-----GCCCTCGACTGGACCAGGGACT----CCAAGATCGGTGCCT 128 consensus_15304#2 TTGTAGAGGTACTCTTATAGCTACCGACCATGTTTTTCATCTTGACCATGTTATGCTTCT 499 ** * *** ** **** * *** * * * ** consensus_15304#0 CCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 760 consensus_15304#3 CCTTCTAGGTCCCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 241 consensus_15304#1 CCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 188 consensus_15304#2 CTCTTCAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 559 * * ***** ************************************************ consensus_15304#0 CGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGC 820 consensus_15304#3 CGGAGAGCACGTGGAATTACCAGATCTGATTGCCTCTTCTACGAGGCAGGCAACTCCTGC 301 consensus_15304#1 CGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGC 248 consensus_15304#2 CGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGC 619 ******************** ******************** ****************** consensus_15304#0 TTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 880 consensus_15304#3 TTAATAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 361 consensus_15304#1 TTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 308 consensus_15304#2 TTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 679 **** ******************************************************* consensus_15304#0 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 940 consensus_15304#3 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 421 consensus_15304#1 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 368 consensus_15304#2 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 739 ************************************************************ consensus_15304#0 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTAC-TATATTCTCTAATG 999 consensus_15304#3 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTAC-TATATTCTCTAATG 480 consensus_15304#1 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTAC-TATATTCTCTAATG 427 consensus_15304#2 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACGTATATTCTCTAATG 799 ********************************************* ************** consensus_15304#0 CACATGATATGATTGAACAAAA------------TGCCTTTGGTGGCGAGAATTCGAGCA 1047 consensus_15304#3 CACATGATATGATTGAACTCC-------------TGCAACCC------------------ 509 consensus_15304#1 CACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 487 consensus_15304#2 CACATGATATGATTGACCAAAAAAAAAGA------------------------------- 828 **************** * consensus_15304#0 TTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTT 1107 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 AAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAANNNNNNNNNNNNANNNNNNNNNNNNN 547 consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 GTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGG 1167 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 NNNNNNNNNNNNNNNANNNNNNNNAANNNNNAAAAANANNNNNNNNNNGGGGGGGGGGGG 607 consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 GCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT-------------------- 1207 consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 GGGGGGAAAAAANNNAANNAAAGGGGGAAAATTAANNGGCCGGAAGGGGGGGGGNNNNAA 667 consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 ------------------------------------------------------------ consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 AAAAAAGGGGGGGAGAGGGAAAAAAGGGGGGANAAAAAAAAAAAAANNNAAAAGAAAAGA 727 consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 ------------------------------------------------------------ consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 GAAANNNANNNGAAGAGGGGGAGAAAAAAAAAGAGGGGGGCGGGGGGGGGNNNNGAAAAA 787 consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 ------------------------------------------------------------ consensus_15304#3 ------------------------------------------------------------ consensus_15304#1 AAGGGGGGAAANNGAGAGGGGAAAAGGGGCCCCCCCNAGNNNNGGNANNAAAAAGCGCGG 847 consensus_15304#2 ------------------------------------------------------------ consensus_15304#0 ---------------- consensus_15304#3 ---------------- consensus_15304#1 GGGGGGTGCGGGGACC 863 consensus_15304#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||