These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1019 fasta sequence [GTCGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC-TTCTG-CTT-CACCAATAAATCCCC--ATACCATGAAACTGTAGATTTT-GATGTGCATGTTGGCCATTTTTCGTAC-TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA-AACTGACCGACAAGCTATATTGAACGAA-AACATGAGCA-GGAGGGCTGTCCA-CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG-CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC-TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA-TACT-CCAAAAGTAGCAGCTCCTCCTAA-TT-TACACTCTCGTCATCCCAACTA-AAGCTGTAAT-TCCGTACTGTATTGGTTGC-TAGATCTGCTGTTTACATG-CTGTGGGTTGCTGTCACATAGA-CCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTAAAAAAAAAAGACCACATACTCGCATCAGCTTCACTATGCAGCTTCCATCTACAGCTGCAACGGTCCCATGAATGTTCT] [+] EMBL CF297651 [GTCGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAG ] [+] EMBL AK073679 [ CGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAGT TCCGAACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCATTAGATGTTTT ] [+] EMBL AU184236 [ GGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGNGATTCTCGTGAC ] [+] EMBL OSC5931 [ TCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGNAACTGTAGATTTT GATGTGCATGTTGGCCANTTTTCGT ] [+] EMBL CF304428 [ CGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAAC AATAGCAAAATTAGATGAAGCGCTT ] [+] EMBL AK105383 [ TACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGAACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTATACTATCAGGACCACATACTCGCATCAGCTTCACTATGCAGCTTCCATCTACAGCTGCAACGGTCCCATGAATGTTCT] [+] EMBL AU032756 [ ACTTCGCTTTCTGNCTTCCCCCAATAAATCCCCCAATACCATGAAACTGTAGATTTTGGATGTNCATGTTGGCCATTTTTCGTACTTTTGATCAGCATGCNAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGAACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAAAAAAAAAAAAAA ] [-] EMBL BI306507 [ GGCCATTTTTCGCAC TTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCCTTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATTAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGATGATTGCAG CTAGCGTCATTCAAGTCTATTTACTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAACAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGTGCTGTATTGGTTGC TAGATTTGCTGTTTACACGTCTGTGGGTTGCTGTCACATAGA CCTTTAATTAT ] [-] EMBL BI305500 [ GCCATTTTTCGTAC TTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGTACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTA ] [+] EMBL BQ906026 [ TTTCGTAC TTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCACAACTGACCGACAAGCTATATTGAACGAA AACATGAGCACGGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCCAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGTACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGACCCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTAAAAAAAAAA ] [-] EMBL BI118620 [ GCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCCCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCG GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTG ] [-] EMBL BI118624 [ GCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCCCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCG GGAGGGCTGTGCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA CT TACACTCTCGTCATCCCAACTA AAGCTG ] [+] EMBL BI796414 [ ATATTGAACGAAGTACATGAGCACGGAGGGCTGTCCACCAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGTCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCGTTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAAGTACTCCCAAAAGTAGCAGCTCCTCCTAAGTTGTACACTCTCGTCATCCCCACTATAAGCTGTAATGTCCGTACTGTATTGGTTGCGTAGATCT CTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCCTTAGATGTTTTCCTTGAAA AAAAAAA ] consensusID : consensus_15311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence [CATAATGTTGATTATGAAGGAGATACAGCTCATGTATCCTTTGTTGTGATCAAGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTACAGATCCCAATGGGAATCAAATCCATGATTCCCGTGACAAGATCAGCGATCAGTTTGAATTCATAGTTCATATGAGACGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCCTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTCTACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAGGGCAGTTCCCAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCTCCTCTTTGAGCGAAAGCTGGGAACATCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTATACTCACCAACCCAACTGTATTTCAATGCTACAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAAAAAAAAAAAAAA] [+] EMBL CA999561 [CATAATGTTGATTATGAAGGAGATACAGCTCATGTATCCTTTGTTGTGATCAAGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTACAGATCCCAATGGGAATCAAATCCATGATTCCCGTGACAAGATCAGCGATCAGTTTGAATTCATAGTTCATATGAGACGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATT ] [-] EMBL CA762221 [ TGAAGGAGATCCAGTCCATGTATCCTCTGTTGTGATCAAGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTAGAGATCCCAATGGTAATCAAATCCATGATTCCCGTGACAAGATCAGCGATAAGTTTGAATTCATAGTTCATAGGAGAGGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCCTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTCTACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAGGGCAGTTCCCAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCTCCTCTTTGAGCGAAAGCTGGGAACATCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTATACTCACCAACCCAACTGTATTTCAATGCTACAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAAAAAAAAAAAAAA] [+] EMBL AU058205 [ CCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCCTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTCTACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAGGGCAGTTCACAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCGCCTCTTTGAGCGAAA NTGGGAACATCGAGGGTCTAATTCTCTGATAGTANGNCTCCTTAGACTCACCAACC ACTGTA TTCAATGCTGC AAATGTG TTACAATATCTG TACATCCTGCTCAGATA TTAGCA TTTTGGTCAGAATTTTGTA ] consensusID : consensus_15311#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [CCATGAAACTGTAGATTTTGATGTCCATTTGCCACTTTTTCGTACTTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACCAATACCCAAATTTAGATTGGAAAGCCGCTTTACCAACATTCAGTTTCGAGCCAGCACTGGCTAGAGGCCCCAACTGACCGACAAGCTATATTGAACGAAAACATGAGCAGGAGGGCTGTCCACAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCTTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAATACTCCAAAGTAGCAGCTCCTCCTAATTTACACTCTCGTCATCCCAACTAAAGCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGTTTACATGCTGTGGGTTGCTGTCACATAGACCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTATACTGTCAGGACCCAAAAAAAAAA] [+] EMBL BI811014 [CCATGAAACTGTAGATTTTGATGTCCATTTGCCACTTTTTCGTACTTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACCAATACCCAAATTTAGATTGGAAAGCCGCTTTACCAACATTCAGTTTCGAGCCAGCACTGGCTAGAGGCCCCAACTGACCGACAAGCTATATTGAACGAAAACATGAGCAGGAGGGCTGTCCACAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCTTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAATACTCCAAAGTAGCAGCTCCTCCTAATTTACACTCTCGTCATCCCAACTAAAGCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGTTTACATGCTGTGGGTTGCTGTCACATAGACCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTATACTGTCAGGACCCAAAAAAAAAA] consensusID : consensus_15311#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 449 fasta sequence [CATGAGTAGGAGGGCAGTTCACAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCGCCTCTTTGAGCGAAAGCTGGGAACATCCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTAGACTCACCAACCCAACTGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCGCATTATATCTATCGTCACATGTATATTAGGTCCTAAGTATTTCCACGGTACGCACTGCTTTAAAACCTTTTTTGCGATCAAGGTACAGGAGTGCTAGTATTGAGAAAGAAAATGAAGAAAGAATTCCTTTTCTGAAAAAAAA] [+] EMBL AU091954 [CATGAGTAGGAGGGCAGTTCACAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCGCCTCTTTGAGCGAAAGCTGGGAACATCCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTAGACTCACCAACCCAACTGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCGCATTATATCTATCGTCACATGTATATTAGGTCCTAAGTATTTCCACGGTACGCACTGCTTTAAAACCTTTTTTGCGATCAAGGTACAGGAGTGCTAGTATTGAGAAAGAAAATGAAGAAAGAATTCCTTTTCTGAAAAAAAA] [+] EMBL CA765214 [ GCTGGGAACAT CGAGGGTCTAATTCTCCGATAGTAGGTCTCCTTATACTCACCAACCCAACTGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCACATTATATCTATCGTCACATGTATATTAGGTCCTAAGTATTTCCACGGTAaaa ] consensusID : consensus_15311#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GGCCATTTTTCGTCCTTAGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACATATAGCAAAATTAGATGAAGCGCTTTACAACATTAAGTTCGACACCCCACCACAAGTCCATAAGCTTACAGCTCTTGTAATAAGGGCCGCTAACCGACAGGGTGGGGCAGTAATATAGGGTAGTATCGGAATTTAGTGGAGTAGTCCTTGGTAGCGATCACCAAGCCAAGCCCTTTGCGAGCACCTTTGAAGGCGGTTTCCGCAAATGTCGATGTATTCATGCTTGTCCATCAAGGCCCAGTTGATATTGTCGCTGTTTCCAGCGCCCAGATCGATCATGATGTGGTTGTGGAGGAAGAAGAACATCGCCGTTGACGAGATCATGCAGCTCGTTCAGAGTGTCCAAGTATGGATCGTTGGTGAAGAAAACCAGGAGATGTCG] [-] EMBL BI306506 [GGCCATTTTTCGTCCTTAGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACATATAGCAAAATTAGATGAAGCGCTTTACAACATTAAGTTCGACACCCCACCACAAGTCCATAAGCTTACAGCTCTTGTAATAAGGGCCGCTAACCGACAGGGTGGGGCAGTAATATAGGGTAGTATCGGAATTTAGTGGAGTAGTCCTTGGTAGCGATCACCAAGCCAAGCCCTTTGCGAGCACCTTTGAAGGCGGTTTCCGCAAATGTCGATGTATTCATGCTTGTCCATCAAGGCCCAGTTGATATTGTCGCTGTTTCCAGCGCCCAGATCGATCATGATGTGGTTGTGGAGGAAGAAGAACATCGCCGTTGACGAGATCATGCAGCTCGTTCAGAGTGTCCAAGTATGGATCGTTGGTGAAGAAAACCAGGAGATGTCG] consensusID : consensus_15311#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [CGAAAACCATGAGCAGGAGGGCTGTCCCCAAGGCTNTATTGGAGTCAGCAGCCGCTGATTGCAAGCTAGGCGTCCATTCCAAGTCTATNTTATTGGCGCCCGCCTCTTTTGAGGCGCCAAGGTGGGGGCCATCCCAGGGGTNTAAAAACTCCCAAAAAGTAGCAGCTCCCTCCTAATTTCCACTCTCGTCATCNCCAACTAAAAGCTGTAATTCCGAACTGNATTGGTTGCTAGATCTGCTGTTTNCATGCTGTGGGGNTGCTGTCACATAAGNCCCNTTAATTATTATGATTCCNTTAGATGTTTTCCTTGAAAAAAAAAAA] [+] EMBL AU184237 [CGAAAACCATGAGCAGGAGGGCTGTCCCCAAGGCTNTATTGGAGTCAGCAGCCGCTGATTGCAAGCTAGGCGTCCATTCCAAGTCTATNTTATTGGCGCCCGCCTCTTTTGAGGCGCCAAGGTGGGGGCCATCCCAGGGGTNTAAAAACTCCCAAAAAGTAGCAGCTCCCTCCTAATTTCCACTCTCGTCATCNCCAACTAAAAGCTGTAATTCCGAACTGNATTGGTTGCTAGATCTGCTGTTTNCATGCTGTGGGGNTGCTGTCACATAAGNCCCNTTAATTATTATGATTCCNTTAGATGTTTTCCTTGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15311#1 ------------------------------------------------------------ consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 GTCGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTT 60 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ------------------------------------------------------------ consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 CTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTA 120 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ------------------------------------------------------------ consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 CCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCT 180 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ------------------------------------------------------------ consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 GCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGT 240 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 --------CATAATGTTGATTATGAAGGAGATACAGCTCATGTATCCTTTGTTGTGATCA 52 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 GTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCA 300 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 AGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTACAGATCCCA 112 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 AGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTA 360 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ATGGGAATCAAATCCATGATTCCCGTGACAAGATCAGCGATCAGTTTGAATTCATAGTTC 172 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 ATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTC 420 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ATATGAGACGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAG 232 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ----------------------------------------------CCATGAAACTGTAG 14 consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 AGAAGAGAGGCGTACATCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAG 480 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATT 292 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 ATTTTGATGTCCAT-TTGCCACTTTTTCGTACTTCGATCAGCATGCGAAAGATGAACATT 73 consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 ATTTTGATGTGCATGTTGGCCATTTTTCGTACTTTGATCAGCATGCGAAAGATGAACATT 540 consensus_15311#4 -----------------GGCCATTTTTCGTCCTTAGATCAGCATGCGAAAGATGAACATT 43 consensus_15311#1 TCAGCGCCTTGTTTGAGCAAATTGCAAA------GTTGGATGAAGCCCTCTACAACATTC 346 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 TTGCTCCTTTGTTTGAACCAATACCCAAATTTAGATTGGAAAGCCGCTTTACCAACATTC 133 consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 TTGCTCCTTTGTTTGAACAAATAGCAAA------ATTAGATGAAGCGCTTTACAACATTC 594 consensus_15311#4 TTGCTCCTTTGTTTGAACATATAGCAAA------ATTAGATGAAGCGCTTTACAACATTA 97 consensus_15311#1 AGTTT--GAACAGCACTGGTTGGAGGCCCAAACAGACCGG-CAAGCAATATTAAACGAGA 403 consensus_15311#3 ------------------------------------------------------------ consensus_15311#2 AGTTTCGAGCCAGCACTGGCTAGAGGCCCCAACTGACCGA-CAAGCTATATTGAACGAAA 192 consensus_15311#5 -------------------------------------------------------CGAAA 5 consensus_15311#0 AGTTC--GAGCAGCACTGGCTAGAGGCCCAAACTGACCGA-CAAGCTATATTGAACGAAA 651 consensus_15311#4 AGTTC---GACACCCCACCACAAGTCCATAAGCTTACAGCTCTTGTAATAAGGGCCGCTA 154 consensus_15311#1 AC-ATGAGTAGGAGGGCAGTT-CCCAAGGCATTCTTTGAATCAGCTGC-TCTCATTGCA- 459 consensus_15311#3 -C-ATGAGTAGGAGGGCAGTT-CACAAGGCATTCTTTGAATCAGCTGC-TCTCATTGCA- 55 consensus_15311#2 AC-ATGAGCAGGAGGGCTGTC-CACAAGGCTCTATTGGAGTCAGCAGC-GCTGATTGCA- 248 consensus_15311#5 ACCATGAGCAGGAGGGCTGTC-CCCAAGGCTNTATTGGAGTCAGCAGCCGCTGATTGCAA 64 consensus_15311#0 AC-ATGAGCAGGAGGGCTGTC-CACAAGGCTCTATTGGAGTCAGCAGC-GCTGATTGCA- 707 consensus_15311#4 ACCGACAG-GGTGGGGCAGTAATATAGGGTAGTATCGGAATT--TAGTGGAGTAGTCCTT 211 * ** * **** ** * ** * * ** * * * * * consensus_15311#1 GCCAG-TGTTG--TGCAGGTCTACCT-ACTG-CATC-TCCTCTTT--GAGCGA--AAGCT 509 consensus_15311#3 GCCAG-TGTTG--TGCAGGTCTACCT-ACTG-CATC-GCCTCTTT--GAGCGA--AAGCT 105 consensus_15311#2 GCTAG-CGTCA--TTCAAGTCTATCT-ATTG-CGCC-GCCTCTTT--GAGCGC--AAGTT 298 consensus_15311#5 GCTAGGCGTCCATTCCAAGTCTATNTTATTGGCGCCCGCCTCTTTTGAGGCGCCAAGGTG 124 consensus_15311#0 GCTAG-CGTCA--TTCAAGTCTATCT-ATTG-CGCC-GCCTCTTT--GAGCGC--AAGTT 757 consensus_15311#4 GGTAGCGATCA---CCAAGCCAAGCCCTTTG---CGAGCACCTTTGAAGGCGG--TTTCC 263 * ** * ** * * * ** * **** *** consensus_15311#1 GGGAACATC--GAGGGTCTAATT-CTCT-----GATAGTAGGTCT--CCTTATACTCACC 559 consensus_15311#3 GGGAACATCC-GAGGGTCTAATT-CTCT-----GATAGTAGGTCT--CCTTAGACTCACC 156 consensus_15311#2 GGGGACATCC--AGGGTCTAAATACTCC---AAAGTAGCAGCTCC-TCCTAATTTACACT 352 consensus_15311#5 GGGGCCATCCCAGGGGTNTAAAAACTCCCAAAAAGTAGCAGCTCCCTCCTAATTTCCACT 184 consensus_15311#0 GGGGACATCC--AGGGTCTAAATACTCC--AAAAGTAGCAGCTCC-TCCTAATTTACACT 812 consensus_15311#4 GCAAATGTCGATGTATTCATGCTTGTCC------ATCAAGGCCCAGTTGATATTGTCGCT 317 * ** * ** * * * * * * consensus_15311#1 AAC-CCAAC-TGTATTTCAATGCTACAAAATGTGTTTACAATATCTGTTACATC--CTGC 615 consensus_15311#3 AAC-CCAAC-TGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATC--CTGC 212 consensus_15311#2 CTCGTCATC-CC-AACTAAA-GCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGT 409 consensus_15311#5 CTCGTCATC-NCCAACTAAAAGCTGTAATTCCGAACTGNATTGGTTGCTAGATCTGCTGT 243 consensus_15311#0 CTCGTCATC-CC-AACTAAA-GCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGT 869 consensus_15311#4 GTTTCCAGCGCCCAGATCGA--TCATGATGTGGTTGTGGAGGAAGAAGAACATC-GCCGT 374 ** * * * * * * * * *** * * consensus_15311#1 TCAGATATT-TAGCATTTTTGTT-CAGAATTT--TGTAATTCAGTTATTTACAGTAC-TG 670 consensus_15311#3 TCAGATATT-TAGCATTTTTGTT-CAGAATTT--TGTAATTCAGTTATTTACAGTAC-TG 267 consensus_15311#2 TTACATGCTGTGGG-TTGCTGTCACATAGACC--TTTAATTATTATGATTCCATTAGATG 466 consensus_15311#5 TTNCATGCTGTGGGGNTGCTGTCACATAAGNCCCNTTAATTATTATGATTCCNTTAGATG 303 consensus_15311#0 TTACATGCTGTGGG-TTGCTGTCACATAGACC--TTTAATTATTATGATTCCATTAGATG 926 consensus_15311#4 TGACGAGAT-CATGCAGCTCGTT-CAGAGTGT---CCAAGTATG--GATCGTTGGTGAAG 427 * * ** ** * ** * * * consensus_15311#1 TGCTGCAGTAAAAAAAAAAAAAA------------------------------------- 693 consensus_15311#3 TGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCGCATTATATCTATCGTCACAT 327 consensus_15311#2 TTTTCCTTGAAACTATACTGTCAGGACCCAAAAAAAAAA--------------------- 505 consensus_15311#5 TTTTCCTTGAAAAAAAAAAA---------------------------------------- 323 consensus_15311#0 TTTTCCTTGAAACTAAAAAAAAAAGACCACATACTCGCATCAGCTTCACTATGCAGCTTC 986 consensus_15311#4 AAAACCAGGAGATGTCG------------------------------------------- 444 * * consensus_15311#1 ------------------------------------------------------------ consensus_15311#3 GTATATTAGGTCCTAAGTATTTCCACGGTACGCACTGCTTTAAAACCTTTTTTGCGATCA 387 consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 CATCTACAGCTGCAACGGTCCCATGAATGTTCT--------------------------- 1019 consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 ------------------------------------------------------------ consensus_15311#3 AGGTACAGGAGTGCTAGTATTGAGAAAGAAAATGAAGAAAGAATTCCTTTTCTGAAAAAA 447 consensus_15311#2 ------------------------------------------------------------ consensus_15311#5 ------------------------------------------------------------ consensus_15311#0 ------------------------------------------------------------ consensus_15311#4 ------------------------------------------------------------ consensus_15311#1 -- consensus_15311#3 AA 449 consensus_15311#2 -- consensus_15311#5 -- consensus_15311#0 -- consensus_15311#4 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||