These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1107 fasta sequence [GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG-ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC-TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT-CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT-TCAGACAGGCTAAAACAGAAA-TAGT-CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA-CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA-GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA-GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT-CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAAAATTTTCTGTCACTCAAAAA] [+] EMBL CF334366 [GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAACCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAG ACACAGC ] [+] EMBL AK104667 [ aAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGC ] [+] EMBL AK073543 [ CACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAA ] [+] EMBL CF328034 [ CACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCACCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGTCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGGGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGC ] [+] EMBL CF293655 [ CACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGT ] [+] EMBL CF333145 [ GCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGA ] [+] EMBL BE040756 [ gggCCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCATCCGCGAGTGGCCGGGACACTTCTACGACCTCCTTTTCAGGAACTG AACCACTT TGGGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCT CCAGGCTGGGTTAATCGTTTT ] [+] EMBL C27782 [ CCGACCGCCACC GNNACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGC CGTTTGAATGAGATGAAGGAGGTGGTGCTCCACGTGTACNACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGNTCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCANCTTGCCCCATCGGGAAGAACCCCATGT ] [+] EMBL AU174541 [ CGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGAT ] [-] EMBL CB679226 [ ATGTACACTTACCGCGAGTGCATCGTCTTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCTTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGTTTTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGGGAATCAATTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATTTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATTTAATGGGTTGTCTTGCAACGGGAACCA ] [+] EMBL AU082300 [ CTCTGCGANAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAAAA ] [-] EMBL CF328035 [ CTGCGAGGGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTTGTGGATCTTTTCTGTCACTCAAAAA] [-] EMBL CF333144 [ CGCCGTCCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAANTAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCCACAACCAGAGTCCCCAAGTAACCAAAGCTGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAAA ] [-] EMBL CF333954 [ CAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAGAACACGTCATCCAAAaaa ] [-] EMBL CF334367 [ GTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGTNTCAGACAGGCTAAAACAGAAA TAGTNCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACTGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAA ] [-] EMBL CF293656 [ ATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAGGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAA ] [+] EMBL BM419735 [ TTTCCCCAATGCTGGTGATACCGCTGTGG AGTTGCTGAGAACACA CAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATC AAA CCCACAACCAGAGTCCCCAAGTAACC AAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGANNCAGTCAACACGGTTGTA CCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCACGCATTTGTTAAAAATACANGGCATGTTTATTCACGCATGAATCTCTGGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTNGACAaaa ] consensusID : consensus_15317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGNATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL C98299 [CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGNATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15317#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [TTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTTGTGGTTCAAAAAAAAA] [+] EMBL AU174540 [TTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTTGTGGTTCAAAAAAAAA] consensusID : consensus_15317#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 378 fasta sequence [CCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGNCTTGGCGGCATCTTNCANAGAGNCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGGTTCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAACCCATGTACAACTNCCGAGGGTTGATTGTNCT] [+] EMBL OS1487A [CCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGNCTTGGCGGCATCTTNCANAGAGNCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGGTTCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAACCCATGTACAACTNCCGAGGGTTGATTGTNCT] [+] EMBL OSS1421A [ CCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTNCGCGTTTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACNACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCT 60 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 CGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGA 120 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 GGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTGATGAGATGAAGGAGG 180 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 TGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCC 240 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 TCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCG 300 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 TCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCT 360 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 TCAGCTGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGG 420 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------------------------------------------------ consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 AGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGC 480 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ------------------CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGC 42 consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 CGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACC-ACTTCTGCGACGTGCTCTGC 539 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 GAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGAT 102 consensus_15317#2 ------------------------------------------------------------ consensus_15317#0 GAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGAT 599 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 ACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATA 162 consensus_15317#2 ------------------------------------TTCAGACAGGCTAAAACAGAAATA 24 consensus_15317#0 ACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATA 659 consensus_15317#3 ------------------------------------------------------------ consensus_15317#1 GTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAAC 222 consensus_15317#2 GTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAAC 84 consensus_15317#0 GTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAAC 719 consensus_15317#3 -------CCAACCAACCACCAC-CCGCTCGCTCGCCGACC-GCCACCGGGACCCAATCAC 51 *** * * ** * * * * ** * ** * * ** * * ** consensus_15317#1 CCACAACCAGAGTCCCCAAGTAACCAA-AGCAGAAATGGCCCAACTTTCCA-GGGGACTT 280 consensus_15317#2 CCACAACCAGAGTCCCCAAGTAACCAA-AGCAGAAATGGCCCAACTTTCCA-GGGGACTT 142 consensus_15317#0 CCACAACCAGAGTCCCCAAGTAACCAA-AGCAGAAATGGCCCAACTTTCCA-GGGGACTT 777 consensus_15317#3 CCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGG 111 ** ** * * ** ** * ** ** * ** ** * * ***** consensus_15317#1 GGTTCAA-GAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCG 339 consensus_15317#2 GGTTCAA-GAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCG 201 consensus_15317#0 GGTTCAA-GAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCG 836 consensus_15317#3 GGCGCGCTGCGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTA-CGACGTGACGA 170 ** * * * * * *** * * * * ** * * * * ** * * consensus_15317#1 CATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNG 399 consensus_15317#2 CATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAG 261 consensus_15317#0 CATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAG 896 consensus_15317#3 ACAGCGACTCGGA--GAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGA 228 * *** * * * * ** ** * * * ***** * * consensus_15317#1 TCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAA 459 consensus_15317#2 TCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAA 321 consensus_15317#0 TCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAA 956 consensus_15317#3 CCGGATCGGNCTTGGCGGCATCTTNCAN--AGAGNCGTCCAGGTCTATGGCGAGGAGGAG 286 * *** * ** ** * ** * * * * * * * * consensus_15317#1 CAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGNATGAATCTCTTGTAT 519 consensus_15317#2 CAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTAT 381 consensus_15317#0 CAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTAT 1016 consensus_15317#3 TGGTCGTTCGGGGTTCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAA 346 ** * * ** * *** *** * * ** * consensus_15317#1 CTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAA 579 consensus_15317#2 CTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGAC 441 consensus_15317#0 CTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGAC 1076 consensus_15317#3 C-CCATGTACAACTNCCGAGGGTTGATTGTNCT--------------------------- 378 * * ** * * *** ** * consensus_15317#1 A------------AAAAAAAAA----------------- 589 consensus_15317#2 AGTTTTGTGGTTCAAAAAAAAA----------------- 463 consensus_15317#0 AGTTT--------AAAAAAAATTTTCTGTCACTCAAAAA 1107 consensus_15317#3 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||