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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1139 fasta sequence
[TACACACACTTGATCAACTATCTAAGGGTGTGAAACACACAGCATTGAGACTGTGAGATCGAGCTATAGTGACAGCCATGGCAATCATCAGTAGCAAAGCTTGCCGTTGTTTGCTACTCGTCTCCTTTGCCTTGCTCCCACTCAGCATGGCCATGGATCCCCTTGGCAGCTACTGCTCCGGGAACAGCTTGGCCGGCAGCAGCAAGGCCGTGGCCAGCATCAACTCCGTCCTCACCGACCTCGTCACCAAGGGCTCCACCGNGTGTCGGCTTCGCCACGTCCACCGCCGGGAAAGGCAGCAACGTCATCTACGGTCTCGTGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCCAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAATTTCTTCGGGCAGGCTGACACGGACAACGGGGGTGATCATGGAGAACGTGCAGGCGATGGACAACGCCAAGGCATTCCAGAAGGCGGGGGGGAAGGGTGATGAGCAAGGCGACGGCACAGGTGTCACAGGCGGGAAGCGGCGGGCTGGGAAGGGTGAAGGACCAATACACGCCATTCATCAATATCTACGGGTTCGCACAGTGCACGCGGGACCTATCGCCGCTGACATGTGCACAATGCCTATCAACGGCGGTGTCCAGGTTCGACCAATATTGCGGCGCGCAACAGGGATGCCGGATACTCTACAGTAGCTGCATGGTGCGCTACGAAATTTACCCCTTCTATTTTCCGCTCGCCACCAGTAGCACCGCCACTACCGACATGACAAAGTATACCAAGACCATCGTGCACCACTAAGAACTACCTACACATACATGGTGATGTGCATGCATGCTTGTACGCATACACATCACATACTAAAGTATAAACTATAGTACAATGTGTGTGGAGACGTTTGATTAGCATGCGGTTCATGAATAATATAAGGCTATAAAGTGTAGCCTTATTAGCATACTATAACCGGGAATAAAATGTGTACTAGCAAAGCAATGTACACACGTTTGTGTGGAGCAGTAATATTATCGAAGTGTTAAACTTATATATTATGTGCTACTGAAA]
[+] EMBL CF278453 [TACACACACTTGATCAACTATCTAAGGGTGTGAAACACACAGCATTGAGACTGTGAGATCGAGCTATAGTGACAGCCATGGCAATCATCAGTAGCAAAGCTTGCCGTTGTTTGCTACTCGTCTCCTTTGCCTTGCTCCCACTCAGCATGGCCATGGATCCCCTTGGCAGCTACTGCTCCGGGAACAGCTTGGCCGGCAGCAGCAAGGCCGTGGCCAGCATCAACTCCGTCCTCACCGACCTCGTCACCAAGGGCTCCACCGNGTGTCGGCTTCGCCACGTCCACCGCCGGGAAAGGCAGCAACGTCATCTACGGTCTCGTGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCCAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAATTTCTTCGGGCAGGCTGACACGGACAACGGGGGTGATCATGGAGAACGTGCAGGCGATGGACAACGCCAAGGCATTCCAGAAGGCGGGGGGGAAGGGTGATGAGCAAGGCGACGGCACAGGTGTCACAGGC ]
[+] EMBL AK061148 [ ACACTTGATCAACTATCTAAGGGTGTGAAACACACAGCATTGAGACTGTGAGATCGAGCTATAGTGACAGCCATGGCAATCATCAGTAGCAAAGCTTGCCGTTGTTTGCTACTCGTCTCC TTGCCTTGCTCCCACTCAGCATGGCCATGGATCCCCTTGGCAGCTACTGCTCCGGGAACAGCTTGGCCGGCAGCAGCAAGGCCGTGGCCAGCATCAACTCCGTCCTCACCGACCTCGTCACCAAGGGCTCCACCG GTGTCGGCTTCGCCACGTCCACCGCCGGGAAAGGCAACAACGTCATCTACGGTCTCGTGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCCAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAATTTCTTCGGGCAGGCTGACACGGACAAC GGGGTGATCATGGAGAACGTGCAGGCGATGGACAACGCCAAGGCATTCCAGAAGGCGGTGGGGAA GGTGATGAGCAAGGCGACGGCACAGGTGTCACAGGCGGGAAGCGGCGGGCTGGGAAGGGTGAAGGACCAATACACGCCATTCATCAATATCTACGGGTTCGCACAGTGCACGCGGGACCTATCGCCGCTGACATGTGCACAATGCCTATCAACGGCGGTGTCCAGGTTCGACCAATATTGCGGCGCGCAACAGGGATGCCGGATACTCTACAGTAGCTGCATGGTGCGCTACGAAATTTACCCCTTCTATTTTCCGCTCGCCACCAGTAGCACCGCCACTACCGACATGACAAAGTATACCAAGACCATCGTGCACCACTAAGAACTACCTACACATACATGGTGATGTGCATGCATGCTTGTACGCATACACATCACATACTAAAGTATAAACTATAGTACAATGTGTGTGGAGACGTTTGATTAGCATGCGGTTCATGAATAATATAAGGCTATAAAGTGTAGCCTTATTAGCATACTATAACCGGGAATAAAATGTGTACTAGCAAAGCAATGTACACACGTTTGTGTGGAGCAGTAATATTATCGAAGTGTTAAACTTATATATTATGTGCTACTGAAA]
[-] EMBL CF278454 [ ATGCCTATCAACGGCGGTGTCCAGGTTCGACCAATATTGCG GCGCAACAGGGATGCCGGATACTCTACAGTAGCTGCATGGTGCGCTACGAAATTTACCCCTTCTATTTTCCGCTCGCCACCAGTAGCACCGCCACTACCGACATGACAAAGTATACCAAGACCATCGTGCACCACTAAGAACTACCTACACATACATGGTGATGTGCATGCATGCTTGTACGCATACACATCACATACTAAAGTATAAACTATAGTACAATGTGTGAGGAGACGTTTGATTAGCATGCGGTTCATGAATAATATAAGGCTATAAAGTGTAGCCTTATTAGCATACTATAACCGGGAATAAAATGTGTACTAGCAAAGCAATGTACACACGTTTGTGTGGAGCAGTAATATTATCGAAGTGTTAAACTTAAAAAT ]
consensusID : consensus_15321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1136 fasta sequence
[CCCCCCACACACACTTCTAACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC-TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC-GACCTCGTC-GCCAAGGGCTCCACC-GGC-GGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC-GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG-TCAAGGTTCGGTCAATAC-TGCGGCGCACA-ACA-GGGATGTCAGA-TTA-ACTACAGTAGCTG-CAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCC-GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG-CAGTGGATGAATAAT-CA-AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCAATGT-ACGCGCACATTCGTGTGGAGTAATAATATTAGAGTTTTTAACCAAAAAAAAAAAA]
[+] EMBL AK061425 [CCCCCCACACACACTTCTAACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC GACCTCGTC GCCAAGGGCTCCACC GGC GGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCAATGT ACGCGCACATTCGTGTGGAGTAATAATATTAGA ]
[+] EMBL CF336290 [ CACACACACTTCTAACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACA CAAGGCCGTGGCAAGCATCAACTCCGTCCTCACCNGACCTCGTCNGCCAAGGGCT CACCGGGCGGGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGGGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCCGGGGGTGATTCTTGTGAACGTGCAGGC ]
[+] EMBL CF326514 [ ACACTTCTAACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC GACCTCGTC GCCAAGGGCTCCACC GGC GGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACAT ]
[+] EMBL CB633093 [ CTAACTACCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCCGTTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC GACCTCGTC GCCAAGGGCTCCACC GGC GGCGGTTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACAAGATCTATCCCTTCTACTTTCC GCTCGCC ]
[+] EMBL CB661725 [ AACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC GACCTCGTC GCCAAGGGCTCCACC GGC GGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTCTACTNTCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGAC ]
[+] EMBL CB668029 [ AACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC GACCTCGTC GCCAAGGGCTCCACC GGC GGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGA ]
[+] EMBL CB672083 [ AACTACCTTTGAGTGATACACAGCAGTGACAGTGAGAGTGAGAGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGCTCATGTCATTTGCC TTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTTCAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACC GACCTCGTC GCCAAGGGCTCCACC GGC GGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCAACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAAGGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCC ]
[-] EMBL CB668030 [ TCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCAGGTTATAACTGGGAATAAAGATGTGAGTACTAGC ]
[-] EMBL CB633094 [ CAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCC GGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAATGCACAGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCAATGTAACG GCACATTCGTGTGGAGTAATAA ]
[-] EMBL CB672084 [ CACAGATGCC GGGGTGATTCTGGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATCTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTTTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGC ]
[-] EMBL CF336291 [ GCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATTTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTG TCAAGGTTCGGTCAATAC TGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CAGGGTGCGCTACGAGATCTATCCCTTTTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCAAaaaaaaa ]
[+] EMBL BI812978 [ CAAC GCGGTGTTCAAGGTTCGGTCCATAC TGCGGCGCACACACACGGGATGTCAGA TTATACTACCGTAGCTGCCAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCCAGTACCCCCAGATCGTTGTGCCCCGCTAAGCATCCCTGGTTAGTTGCACGTACCTGGTGATGTGCGCATGCCAAAGTTGCCAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTGCCCGTGGATGAATAATCCC AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCCATGT ACGCGCACATTCGTGTGGAGTAATAATATTAGAGTTTTTAA AAAAAAAA ]
[+] EMBL BI812836 [ acATACTTGCGGCGCACA ACA GGGATGTCAGA TTA ACTACAGTAGCTG CA GGTGCGCTACGAGATCTATCCCTTCTACTTCCC GCTCGCCACCAGCGCACGCAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGC ATGT ACGCGCACATTCGTGTGGAGTAATAATATTAGAGTTTTTAACCCAAAAA ]
[+] EMBL BI813629 [ CAGACTCA ACTACAGTAG TG CAGGGTGCGCTACGAGATCTATCCCTTCTACTTCCCAGCTCGCCACCAGCGCAC CAGCGCCACCACTGACATGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCAATGT ACGCGCACATTCGTGTGGAGTAATAATATTAGAGTTTTTAACCAAAAA ]
[+] EMBL BM422057 [ ccGACCAAGTACACCAAGATCGTTGTGCACCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTG CAGTGGATGAATAATCCA AGGCTATAAAATGTA CCTTAGCATGTTATAACTGGGCATCAAGATGTGAGTACTAGCTAAGCAAaaaa ]
[+] EMBL BM419474 [ ccgGTTTCAGCGTG CAGTGGATGAATAAT CA AGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCAATGT ACGCGCACATTCGTGTGGAGTAATAATATTAGAGTTTTTAACCATAAAAAAAAAA]
consensusID : consensus_15321#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence
[AGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCCGGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATTTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACTCCAGTAGCTGCAGGGTGCGCTACGAGATCTATCCCTTTTACTTCCCGCTCGCCACCAGCGCACGCAGCGCCACCCCTGACATGACCAAGTACACCAAGATCGTTGTGCCCCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACCCATCCCGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTGCAGTGGATGAATAATCAAGGCTATAAAATGTACCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAAAAAAAAAAAAAAAGA]
[-] EMBL CB661726 [AGGCCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAAGAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGGACACAGATGCCGGGGTGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTCCAGAAGGCGGTAGGGAAGGTTATGGGCAAGGCAACGTCGCAGGCATCACAGGCTGGGAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAACATTTACGGGCTGGCACAGTGCACACAGGACTTGTCACCGCTGGCTTGCGCACAGTGTCTGTCAACGGCGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACTCCAGTAGCTGCAGGGTGCGCTACGAGATCTATCCCTTTTACTTCCCGCTCGCCACCAGCGCACGCAGCGCCACCCCTGACATGACCAAGTACACCAAGATCGTTGTGCCCCGCTAAGCATCCATGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGTTGCAAACCCATCCCGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTGCAGTGGATGAATAATCAAGGCTATAAAATGTACCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAAAAAAAAAAAAAAAGA]
consensusID : consensus_15321#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[CAGCTTTCCCAAAGCGGTAGAAGTTATTGGCCAAAGCCAACTTCGCAGCATCACCAGTTCTGGGATTGTTGGCTTGGGTAGTACAAGGATCAGTACACGCCGTGCATCAAACAATCTACGGGCTGTCACAGTGCAACACACGGACTGTCACCCTGGCTTGCGCACAGATGTCTGTCAACGGCGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACTACCAGTACTCCAGGGTGCGTCTACGAGATCTATCCCTTCTGACTTCCCGCTCGCCACCAGCGCACGCAGCGCCACCCCTGACATGACCCAGTACCCCACAGATCGTTGTGCACCGCTAAGCATCCACTGGTTAGTTGCACGTACATGGTGATGTGCGCATGCCAAAGTTGCAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTGCCGTGGATGAATAATCACAGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCCATGT]
[+] EMBL BI807558 [CAGCTTTCCCAAAGCGGTAGAAGTTATTGGCCAAAGCCAACTTCGCAGCATCACCAGTTCTGGGATTGTTGGCTTGGGTAGTACAAGGATCAGTACACGCCGTGCATCAAACAATCTACGGGCTGTCACAGTGCAACACACGGACTGTCACCCTGGCTTGCGCACAGATGTCTGTCAACGGCGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACTACCAGTACTCCAGGGTGCGTCTACGAGATCTATCCCTTCTGACTTCCCGCTCGCCACCAGCGCACGCAGCGCCACCCCTGACATGACCCAGTACCCCACAGATCGTTGTGCACCGCTAAGCATCCACTGGTTAGTTGCACGTACATGGTGATGTGCGCATGCCAAAGTTGCAACACATCACGTACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTTCAGCGTGCCGTGGATGAATAATCACAGGCTATAAAATGTAGCCTTAGCATGTTATAACTGGGAATAAAGATGTGAGTACTAGCTAAGCCATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15321#2 ------------------------------------------------------------
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 CCCCCCACACACACTTCTAACTAGCTAGGTGTGATACACAGCAGTGACAGTGAGAGTGAG 60
consensus_15321#0 --TACACACACTTGATCAACTATCTAAGGGTGTGAAACACACAGCATTGAGACTGTGAGA 58
consensus_15321#2 ------------------------------------------------------------
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 AGTGAGCTTGAGTGATCATAGCCATGGCATTCAGTAGCAAAGCTTGCCGTTGCTTGGTGC 120
consensus_15321#0 TCGAGCTATAGTGACAGCCATGGCAATCATCAGTAGCAAAGCTTGCCGTTGTTTGCTACT 118
consensus_15321#2 ------------------------------------------------------------
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 TCATGTCATTTGCCTTGCTCCCACTGAGCATGGCCATGGACTCCATTGGCAGCTACTGTT 180
consensus_15321#0 CGTCTCCTTTGCCTTGCTCCCACTCAGCATGGCCATGGATCCCCTTGGCAGCTACTGCTC 178
consensus_15321#2 ------------------------------------------------------------
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 CAGGGAACAGCTTGGCCGGCAACAGCAAGGCCGTGGCAAGCATCAACTCCGTCCTCACCG 240
consensus_15321#0 CGGGAACAGCTTGGCCGGCAGCAGCAAGGCCGTGGCCAGCATCAACTCCGTCCTCACCGA 238
consensus_15321#2 ------------------------------------------------------------
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 ACCTCGTCGCCAAGGGCTCCACCGGCGGCGGCTTCGCCACGTCCTCCGCCGGGAAAGCCA 300
consensus_15321#0 CCTCGTCACCAAGGGCTCCACCGNGTGTCGGCTTCGCCACGTCCACCGCCGGGAAAGGCA 298
consensus_15321#2 ---------------------------------------------------------AGG 3
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 ACAACGTCATCTACGGTCTCGCGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGG 360
consensus_15321#0 GCAACGTCATCTACGGTCTCGTGCAATGCCGCGGCGACGTCTCCACCAGCGACTGCCAGG 358
consensus_15321#2 CCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAA 63
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 CCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCAA 420
consensus_15321#0 CCTGCCTCGCCTCCGCCGCCAACCAGATCCTCACCAGCTGCAACTACCAATCCGACTCCA 418
consensus_15321#2 GAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGG 123
consensus_15321#3 ------------------------------------------------------------
consensus_15321#1 GAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAACTTCATCGGGCAGACGG 480
consensus_15321#0 GAATATGGTATGACTACTGCTTCATGCGGTTCGAGAACGAGAATTTCTTCGGGCAGGCTG 478
consensus_15321#2 ACACAGATGCCGGGG-TGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTC 182
consensus_15321#3 ----------------------------------------------------CAGCTTTC 8
consensus_15321#1 ACACAGATGCCGGGG-TGATTCTTGTGAACGTGCAGGCGATGGATAACGGCAAGGCGTTC 539
consensus_15321#0 ACACGGACAACGGGGGTGATCATGGAGAACGTGCAGGCGATGGACAACGCCAAGGCATTC 538
** ***
consensus_15321#2 CAGAAGGCGGTAGGGAAGGTTATGGGC--AAGGCAACGTCGCAGGCATCACAGG--CTGG 238
consensus_15321#3 CCAAAG-CGGTAG---AAGTTATTGGCCAAAGCCAACTTCGCAG-CATCACCAGTTCTGG 63
consensus_15321#1 CAGAAGGCGGTAGGGAAGGTTATGGGC--AAGGCAACGTCGCAGGCATCACAGG--CTGG 595
consensus_15321#0 CAGAAGGCGGGGGGGAAGGGTGATGAGC-AAGGCGACGGCACAGGTGTCACAGG--CGGG 595
* *** *** * * * * * *** * ** * *** **** * * **
consensus_15321#2 GAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAAC--ATTTACGGG 296
consensus_15321#3 GATTGTTGGCTTGGGTAGTAC-AAGGATCAGTACACGCCGTGCATCAAACAATCTACGGG 122
consensus_15321#1 GAGTGGTGGGCTGGGTAGGACGAAGGATCAGTACACGCCGTTCATCAAC--ATCTACGGG 653
consensus_15321#0 AAGCGGCGGGCTGGGAAGGGTGAAGGACCAATACACGCCATTCATCAAT--ATCTACGGG 653
* * ** **** ** ***** ** ******** * ****** ** ******
consensus_15321#2 CTGGCACAGTGCA-CACAGGACTTGTCACCGCTGGCTTGCGCACAG-TGTCTGTCAACGG 354
consensus_15321#3 CTGTCACAGTGCAACACACGGACTGTCACC-CTGGCTTGCGCACAGATGTCTGTCAACGG 181
consensus_15321#1 CTGGCACAGTGCA-CACAGGACTTGTCACCGCTGGCTTGCGCACAG-TGTCTGTCAACGG 711
consensus_15321#0 TTCGCACAGTGCA-CGCGGGACCTATCGCCGCTGACATGTGCACAA-TGCCTATCAACGG 711
* ********* * * * * ** ** *** * ** ***** ** ** *******
consensus_15321#2 CGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACT-CCAGT 413
consensus_15321#3 CGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACTACCAGT 241
consensus_15321#1 CGGTGTCAAGGTTCGGTCAATACTGCGGCGCACAACAGGGATGTCAGATTAACT-ACAGT 770
consensus_15321#0 CGGTGTCCAGGTTCGACCAATATTGCGGCGCGCAACAGGGATGCCGGATACTCT-ACAGT 770
******* ******* ***** ******** *********** * *** ** ****
consensus_15321#2 AGCTGCAGGGTGCG-CTACGAGATCTATCCCTTTT-ACTTCCCGCTCGCCACCAGCGCAC 471
consensus_15321#3 A-CTCCAGGGTGCGTCTACGAGATCTATCCCTTCTGACTTCCCGCTCGCCACCAGCGCAC 300
consensus_15321#1 AGCTGCAGGGTGCG-CTACGAGATCTATCCCTTCT-ACTTCCCGCTCGCCACCAGCGCAC 828
consensus_15321#0 AGCTGCATGGTGCG-CTACGAAATTTACCCCTTCT-ATTTTCCGCTCGCCACCAGTA--- 825
* ** ** ****** ****** ** ** ***** * * ** **************
consensus_15321#2 GCAGCGCCACCCCTGACATGACCAAGTACACCA-AGATCGTTGTGCCCCGCTAAGCATCC 530
consensus_15321#3 GCAGCGCCACCCCTGACATGACCCAGTACCCCACAGATCGTTGTGCACCGCTAAGCATCC 360
consensus_15321#1 GCAGCGCCACCACTGACATGACCAAGTACACCA-AGATCGTTGTGCACCGCTAAGCATCC 887
consensus_15321#0 GCACCGCCACTACCGACATGACAAAGTATACCA-AGACCATCGTGCACCACTAAGAAC-- 882
*** ****** * ******** **** *** *** * * **** ** ***** *
consensus_15321#2 A-TGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGT-TGCAAACCCATCCCGT 588
consensus_15321#3 ACTGGTTAGTTGCACGTACATGGTGATGTGCGCATGCCAAAGT-TGCAA-CACATCACGT 418
consensus_15321#1 A-TGGTTAGTTGCACGTACATGGTGATGTGCGCATGCAAAAGT-TGCAAACACATCACGT 945
consensus_15321#0 ------TACCTACACATACATGGTGATGTGCATGCATGCTTGTACGCATACACATCACAT 936
** * *** *************** ** *** * **** * *
consensus_15321#2 ACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTT---CAGCGTGCAGTGG 645
consensus_15321#3 ACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTT---CAGCGTGCCGTGG 475
consensus_15321#1 ACGTACGTATTAATGTTCAACGTATTATGTGTCTGTGGATGTTT---CAGCGTGCAGTGG 1002
consensus_15321#0 ACTAAAGTATAAA---CTATAGTACAATGTGTGTGGAGACGTTTGATTAGCATGCGGTTC 993
** * **** ** * *** ****** ** ** **** *** *** **
consensus_15321#2 ATGAATAATCA-AGGCTATAAAATGTACCCTTA---GCATGTTATAACTGGGAATAAAGA 701
consensus_15321#3 ATGAATAATCACAGGCTATAAAATGTAGCCTTA---GCATGTTATAACTGGGAATAAAGA 532
consensus_15321#1 ATGAATAATCA-AGGCTATAAAATGTAGCCTTA---GCATGTTATAACTGGGAATAAAGA 1058
consensus_15321#0 ATGAATAATATAAGGCTATAAAGTGTAGCCTTATTAGCATACTATAACCGGGAATAAA-- 1051
********* ********** **** ***** **** ****** *********
consensus_15321#2 TGTGAGTACTAGCTAAAAAAAAAAAAAAAAGA---------------------------- 733
consensus_15321#3 TGTGAGTACTAGCTAAGCCATGT------------------------------------- 555
consensus_15321#1 TGTGAGTACTAGCTAAGCAATGTACGCGCACATTCGTGTGGAGTAATAATATTAGAGTTT 1118
consensus_15321#0 -ATGTGTACTAGCAAAGCAATGTACACACGTTTGTGTGGAGCAGTAATATTATCGAAGTG 1110
** ******** ** *
consensus_15321#2 -----------------------------
consensus_15321#3 -----------------------------
consensus_15321#1 TTAACCAAAAAAAAAAAA----------- 1136
consensus_15321#0 TTAAACTTATATATTATGTGCTACTGAAA 1139
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||