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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1523 fasta sequence
[CGTCGTTCGTCATCAGGTTTTTCCTCCCGAGCTCGAGAGGCGCAACAAAAGCCATCTCTCCTTTTCCCCCGCCGCCGCCGCCGCCTCTCTCCGTCTGAAAACACCCAAAAACCCAACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA-CGAG-CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA-GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC-TCGGGATCGACCTCGAGCCGCTC-TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTC-GAGG-CC-TTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG-CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGG-AAAGTTGATAGTTAAGGAAGCA-CCGAGAGCTGTG-AGTGAGAGAGAAGATAAACTGTT-CAAT-GAG-CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA-CCA-GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATATCATGACTGATGATTACTAATTCATTACAGGTTCGTAAAAAAAAGA]
[+] EMBL AK073460 [CGTCGTTCGTCATCAGGTTTTTCCTCCCGAGCTCGAGAGGCGCAACAAAAGCCATCTCTCCTTTTCCCCCGCCGCCGCCGCCGCCTCTCTCCGTCTGAAAACACCCAAAAACCCAACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTC TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTC GAGG CC TTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTT ]
[+] EMBL AU164697 [ CATCAGGTTTTTCCTCCCGAGCTCGAGAGGCGCAACAAAAGCCATCTCTCCTTTTCCCCCGCCGCCGCCGCCGCCTCTCTCCGTCTGAAAACACCCAAAAACCCAACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCNNCATCTCCTCCCTCATCAA GGTCGGCNGCAAGAAGCCn ]
[+] EMBL CF311305 [ CGCCTCTCTCCGTCTGAAAACACCCAAAAACCCAACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAGACCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTC TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTC GAGG CC TTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCA ]
[+] EMBL AK104149 [ CTCTCTCCGTCTGAAAACACCCAAAAACCCAACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTC TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTC GAGG CC TTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAA ]
[+] EMBL CF280123 [ ACCCAACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTANCGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAAGGGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCC AGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGA ACCCTTCGGGATCGACCTCGAGCCG ]
[+] EMBL CA756274 [ AACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTC TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTGC GAGGNNC TTC AGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGT ]
[+] EMBL AU055966 [ AACCAAACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCANGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTCTTACCAGCGNATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTCGGAGG CCTTTAAAGCTCATCGTCGCCGACCCCGA ]
[+] EMBL AK105818 [ ATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTC TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTC GAGG CC TTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCACTCACCTACGAGGAGAAAGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCGCAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATATCATTACT ]
[+] EMBL CF324310 [ gCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCCACGATGCCGAACCTCGAGTGCCGGATGTA CGAG CCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCCTCATCAA GGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGACAAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAGGACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCC TCGGGATCGACCTCGAGCCGCTC TACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGCCATGCCTTC GAGG CC TTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTC ]
[+] EMBL AU031782 [ GAGGAGAAGGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTGNAGTGAGAGAGAAGATAAACTGTT CAATGGAG CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGANCCCCTTGAATTCACTGATGCGCGTTGTCTGGGGNGTTTTCGTTTTGGGGGTGA ]
[-] EMBL CB620919 [ CCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCAGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCTGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTGTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATATCATGACTGATGATTACTAATTCATTACAGGTTCGTAAAAAAAAGA]
[-] EMBL CB620952 [ ATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCAGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCTGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTGTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATATCAGGACTGATGATTACTAATTCATTACAGGTTCGTcttaaagga ]
[+] EMBL AU055967 [ GACACCACAGCCACTTAANATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAGCCAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTAaaaaaa ]
[-] EMBL CB620951 [ TTTCCAATTTGATGGGGTGCTTCACATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCAGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCTGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATTTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATATAATTTTTTGTTGGGATCGAAACATAATTCTGTTGGTATACATCGTCTTTGATTGGCCACTTCTATTCCCCGTGGTTTTTCATTCAAAATATCAAGGCGGATGATTAC ]
[-] EMBL CB620918 [ TTTGATGGGGTGCTTCCCATTAAG CAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATTAAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGG AAAGTTGATAGTTAAGGAAGCA CCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCAGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATCCAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCTGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTGTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATAAAAGGAGTGAGGATTACTAATTC ]
[+] EMBL BI811639 [ CCAAGCCATTTCAGTTCTCACTGAT C ATTAAAGCTTGCACA CTGAGATCGAGAATCACAAGGG AAAGTTGATAGTTAAGGAAGCACCCGAGAGCTGTG AGTGAGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGA C AAAT CGGAGGTTGATGGTGAT CTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCCGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCACCCACGCC ATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTAaaaaaaaaa ]
[+] EMBL AU031781 [ CAAGGGAAAAGTTGATANTTAAGGAAGCA CCGAGAGCTNTG AGTGAGAGAGAAGATAAACTGTTCCAAT GAGCCACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATATCATTACTGATGATTACTAAaaa ]
[-] EMBL CF280124 [ AGAGAGAAGATAAACTGTT CAAT GAG CACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGGATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCA CCA GCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGACTGTGACCCCTTTGAATCCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTATTTGATTGGCCACTTCTAaaata ]
consensusID : consensus_15322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence
[CATAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGACTGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCCAAATGTCGGAGGTTGACTGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCCGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCACCAGCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BQ906769 [CATAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGACTGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCCAAATGTCGGAGGTTGACTGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGGATTAAAGTTCCGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCACCAGCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCCAAAAAAAAAAA ]
[+] EMBL AU032305 [ taTTTGATTTGGNTGAGTTTTGTTGTNTAGCNCCAGCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCNCTGATGCGCGTTNTNTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTNCTCGAGTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15322#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[TGTGAGTAAAAAAAAAAATAACCTGTCCAATGAGCCCATAGAACCCCTTACCGACCAAAATGCGGAGGTTGGTGGTAATGCTCCCAGTGAAGAGGAGGAAAACCCAGGAATGGGTGCCATCCCCCTTCCAAATTCCGGTGTCAACGCGGATTAAAGTCCCGCTATTTAATTGGGATGAGTTTTGTTGTATACCCCCACCCAATTTTAAGTCGCCCTATTTAAAAAAAGTTCGTTAGGTTTTGGGGCCTGTCCCCCCTTTGAATTCACTAATGCGCGTTGTTTGGGGTGTTTGCGTTTTGGGGTTAAGGTCGTGTTGAAAAATTGCTCAAGAAGCATTTAATTTTTTTTGGGGATCGAAACATAATTCGGTTGCAAACCATCGTCTTTGATGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF311306 [TGTGAGTAAAAAAAAAAATAACCTGTCCAATGAGCCCATAGAACCCCTTACCGACCAAAATGCGGAGGTTGGTGGTAATGCTCCCAGTGAAGAGGAGGAAAACCCAGGAATGGGTGCCATCCCCCTTCCAAATTCCGGTGTCAACGCGGATTAAAGTCCCGCTATTTAATTGGGATGAGTTTTGTTGTATACCCCCACCCAATTTTAAGTCGCCCTATTTAAAAAAAGTTCGTTAGGTTTTGGGGCCTGTCCCCCCTTTGAATTCACTAATGCGCGTTGTTTGGGGTGTTTGCGTTTTGGGGTTAAGGTCGTGTTGAAAAATTGCTCAAGAAGCATTTAATTTTTTTTGGGGATCGAAACATAATTCGGTTGCAAACCATCGTCTTTGATGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15322#0 CGTCGTTCGTCATCAGGTTTTTCCTCCCGAGCTCGAGAGGCGCAACAAAAGCCATCTCTC 60
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 CTTTTCCCCCGCCGCCGCCGCCGCCTCTCTCCGTCTGAAAACACCCAAAAACCCAACCAA 120
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 ACCCTAGATCCGCCGCCTCCCCGCTCCTCCGTCTCCGACTCCGGCGACGCCCGCGCGGCC 180
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 ACGATGCCGAACCTCGAGTGCCGGATGTACGAGCCGCGGTTCCCGGAGGTGGACGCGGCG 240
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 GTGATGATCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTAC 300
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 AACAACATCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATC 360
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 TCCTCCCTCATCAAGGTCGGCCGCCAGGAGCCCGCCATCGTGCTCCGCGTCGACCGCGAC 420
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 AAGGGCTACATCGACCTCTCCAAGCGCAGGGTCTCCGAGGAGGAGGCGCACGCCTGCGAG 480
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 GACAGGTACAACAAGTCCAAGCTCGTCCACTCGATCATGCGCCACGTCGCCGAGACCCTC 540
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 GGGATCGACCTCGAGCCGCTCTACCAGCGCATCGGATGGCCGCTGTACCGCAAGTACGGC 600
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 CATGCCTTCGAGGCCTTCAAGCTCATCGTCGCCGACCCCGATGCCATCCTCGACTCACTC 660
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 ACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGGTGACTAAGGTGGTGCCTGCT 720
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 GTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAG 780
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 CCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCAC 840
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 ATTAAGCAAGCCATGAGGAAGGCTGAAGCTGCTGGTAATGATAATTGTCCAGTGAAGATT 900
consensus_15322#1 ------------------------------------------------------------
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 AAGCTAGTTGCACCTCCACTTTATGTGCTGACCACACAAACTCTTGACAAGGACCAAGGC 960
consensus_15322#1 -----------------------------------------------------CATAGGC 7
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 ATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGGA 1020
consensus_15322#1 ATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAATCACAAGGGA 67
consensus_15322#2 ------------------------------------------------------------
consensus_15322#0 AAGTTGATAGTTAAGGAAGCACCGAGAGCTGTGAGTGAGAGAGAAGATAAACTGTTCAAT 1080
consensus_15322#1 AAGTTGATAGTTAAGGAAGCACCGAGA-CTGTGAGTGAGAGAGAAGATAAACTGTTCAAT 126
consensus_15322#2 -----------------------------TGTGAGTAAAAAAAAAAATAACCTGTCCAAT 31
******* * * * ** **** **** ****
consensus_15322#0 GAGCACATAGAAACCCTTAACGAGCAAAATG-CGGAGGTTGA-TGGTGATGCTGACAGTG 1138
consensus_15322#1 GAGCACATAGAAACCCTTAACGAGCCAAATGTCGGAGGTTGACTGGTGATGCTGACAGTG 186
consensus_15322#2 GAGCCCATAGAACCCCTTACCGACCAAAATG-CGGAGGTTGG-TGGTAATGCTCCCAGTG 89
**** ******* ****** *** * ***** ********* **** ***** *****
consensus_15322#0 AAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGTGTCAACGCGG 1198
consensus_15322#1 AAGAGGAGGAAGATACAGGAATGGGTGACATCGACCTTACAAATTCCGGCGTCAACGCGG 246
consensus_15322#2 AAGAGGAGGAAAACCCAGGAATGGGTGCCATCCCCCTTCCAAATTCCGGTGTCAACGCGG 149
*********** * ************ **** **** ********** **********
consensus_15322#0 ATTAAAGTTCCGCTATTTGATTTGGATGAGTTTTGTTGTATAGCACCAGCCAATCTTAAG 1258
consensus_15322#1 ATTAAAGTTCCGCTGTTTGATTTGGATGAGTTTTGTTGTATAGCACCAGCCAATCTTAAG 306
consensus_15322#2 ATTAAAGTCCCGCTATTTAATTGGGATGAGTTTTGTTGTATACCCCCACCCAATTTTAAG 209
******** ***** *** *** ******************* * *** ***** *****
consensus_15322#0 TCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTG 1318
consensus_15322#1 TCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTG 366
consensus_15322#2 TCGCCCTATTTAAAAAAAGTTCGTTAGGTTTTGGGGCCTGTCCCCCCTTTGAATTCACTA 269
*** ******* **** ************* *** * **** ****************
consensus_15322#0 ATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGA 1378
consensus_15322#1 ATGCGCGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGA 426
consensus_15322#2 ATGCGCGTTGTTTGGGGTGTTTGCGTTTTGGGGTTAAGGTCGTGTTGAAAAATTGCTCAA 329
*********** *********************** *********** * ******** *
consensus_15322#0 GTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGA 1438
consensus_15322#1 GTAGCATCTAATTTTTTCTTGGGATCGAAACATAATTCTGTTGCTATACATCGTCTTTGA 486
consensus_15322#2 GAAGCATTTAATTTTTTTTGGGGATCGAAACATAATTCGGTTGCAAACCATCGTCTTTGA 389
* ***** ********* * ****************** ***** * ************
consensus_15322#0 TTGGCCACTTCTATTGCCCGTTGTTTTTCATTCAAAATATCATGACTGATGATTACTAAT 1498
consensus_15322#1 TTGGCC--------------------CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 526
consensus_15322#2 TGGCCC----------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 426
* * ** * **** * * * * * * **
consensus_15322#0 TCATTACAGGTTCGTAAAAAAAAGA 1523
consensus_15322#1 AAAAAAAAAAAAAAAAAAAAAAAAA 551
consensus_15322#2 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||