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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2292 fasta sequence
[ACCGATCTCTCTAAACCCAAATACGCAACAAATACTCAATCGTCACATCTTAAAAAACAAAGAAAAAGGAAGAGAGAGAGAGAGGGAAAACAAAAAAGAAAAGAAAAATCAATTCCCAACCTTGCTGCTACAAATGCCTCAGGCTTAGCAACTCGACCTCCTCCCCCCTTCTCCCCTTCCTCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAACGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCCCAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTCCCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAGCACATCCGCTCTGATGCAGGACTCGCCGCCATCCTCGCCGGAGACGGGACCCATTCCGCCCCAAGAAACTGCAGCTGGCGCCGGAAACAATGACAGCACTGTGGACCCCGTCGATCTCCCTGAGGACAAGTCGCTGGTGGAGGCGCAGCCTCAAGAACCCGGCTTCCCCTCGGCGGAATCTCAGGAGCCTGGCTTGCCGGCGGCGCTCTCGAGGAAGGAGGATGATGCGGAGAGGGCGGCGGCGGCGGCGGCCTCGGAGATAAAGCAATCCGAGAAGAAGAACGGCGTGGCGGCGGGTGGTGATACCAAGATAAAGTGCGACGAGAACGGCGTGGACGAGGGCTTCCCGTACGCGCGGCCGTCGGTTTGCGAGCTGTACGGCGACGTCCGCGTCAGCCCCAAGCAGAAGACCATTTACGTCGTGAACCCGTCGGGCGCCGGCGGCTTCGACGAGAACGGCGAGAAGCGGCTCCGGCCCTACGCCCGCAAGGACGATTTCCTCCTCCCGGGCGTGGTGGAGGTGACTATCAAGTCCGTGCCCTCCGAGGCGGCGGCCCCCAAGTGCACGAAGCAGCACGCCGTCCCCGCCGTGGTGTTCTCCGTGGCCGGGTACACGGACAACTTCTTCCACGACATGACCGATGCCATGATCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGGGATGCGGCCGCGGATGCTGATCATCTCCCGCGCCGGCACGCGCAAGCTGCTGAACCTCGAGGAGGTGGCCGCGGCCGCGACGGAGCTTGGTTTCAACGTGACGGTGGCGGAGGCCGGTGCTGACGTGCCCGCGTTCGCGGCGCTGGTGAACTCGGCGGACGTGCTGCTGGCCGTGCACGGCGCCGGGCTGACGAACCAGATCTTCCTCCCGGCGGAGGCCGTGGTGGTGCAGATCGTGCCGTGGGGGAACATGGACTGGATGGCGACCAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT-CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC-GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTCTTTTCTACTAATACGGGAGCCAACTA]
[+] EMBL OSS12712A [ACCGATCTCTCTAAACCCAAATACGCAACAAATACTCAATCGTCACATCTTAAAAAACAAAGAAAAAGGAAGAGAGAGAGAGAGGGAAAACAAAAAAGAAAAGAAAAATCAATTCCCAACCTTGCTGCTACAAATGCCTCAGGCTTAGCAACTCGACCTCCTCCCCCCTTCTCCCCTTCCTCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGG AAC ]
[+] EMBL AK070014 [ TTCTCCCCTTCCTCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAACGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCCCAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTCCCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAGCACATCCGCTCTGATGCAGGACTCGCCGCCATCCTCGCCGGAGACGGGACCCATTCCGCCCCAAGAAACTGCAGCTGGCGCCGGAAACAATGACAGCACTGTGGACCCCGTCGATCTCCCTGAGGACAAGTCGCTGGTGGAGGCGCAGCCTCAAGAACCCGGCTTCCCCTCGGCGGAATCTCAGGAGCCTGGCTTGCCGGCGGCGCTCTCGAGGAAGGAGGATGATGCGGAGAGGGCGGCGGCGGCGGCGGCCTCGGAGATAAAGCAATCCGAGAAGAAGAACGGCGTGGCGGCGGGTGGTGATACCAAGATAAAGTGCGACGAGAACGGCGTGGACGAGGGCTTCCCGTACGCGCGGCCGTCGGTTTGCGAGCTGTACGGCGACGTCCGCGTCAGCCCCAAGCAGAAGACCATTTACGTCGTGAACCCGTCGGGCGCCGGCGGCTTCGACGAGAACGGCGAGAAGCGGCTCCGGCCCTACGCCCGCAAGGACGATTTCCTCCTCCCGGGCGTGGTGGAGGTGACTATCAAGTCCGTGCCCTCCGAGGCGGCGGCCCCCAAGTGCACGAAGCAGCACGCCGTCCCCGCCGTGGTGTTCTCCGTGGCCGGGTACACGGACAACTTCTTCCACGACATGACCGATGCCATGATCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGGGATGCGGCCGCGGATGCTGATCATCTCCCGCGCCGGCACGCGCAAGCTGCTGAACCTCGAGGAGGTGGCCGCGGCCGCGACGGAGCTTGGTTTCAACGTGACGGTGGCGGAGGCCGGTGCTGACGTGCCCGCGTTCGCGGCGCTGGTGAACTCGGCGGACGTGCTGCTGGCCGTGCACGGCGCCGGGCTGACGAACCAGATCTTCCTCCCGGCGGAGGCCGTGGTGGTGCAGATCGTGCCGTGGGGGAACATGGACTGGATGGCGA CAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTATAC ]
[+] EMBL OSR26631A [ TTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAACGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCCCAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTCCCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAACACATCCGCTCTG ]
[+] EMBL AU096227 [ GACATGACCGATGCCATGATCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGNTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGGGATGCG ]
[+] EMBL AU071106 [ ctnaagTCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGTNACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGG ]
[+] EMBL AU108936 [ ATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTNCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCG ]
[+] EMBL CB000698 [ CCGTGGGGGAACATGGACTGGATGGCGACCAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTCTTTTCTACTAATACGGGAGCCAACTA]
[+] EMBL CA999464 [ CCGTGGGGGAACATGGACTGGATGGCGACCAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCA ]
[-] EMBL OSA420727 [ GAAGCACAACTACTCGCGAGATGCACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCGCAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACATCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGCAGGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTT GGTTTGTAACAATTTGTATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTGCACTCCTTCACTTCGCCAGCCCATTCAACACTATACATTCTTTTCTACTA ]
[-] EMBL CB965606 [ GCGCTCCACGCGCAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTT GGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTGCACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTC ]
[+] EMBL AU069808 [ GGTTCCGGCCAATCCTGCTGCAGGCGCTCGANAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAaa ]
consensusID : consensus_15333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 785 fasta sequence
[GCTAAGCCCAAGATGTTGATGATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA-GG-GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC-GCGCAGGG-CTGGCCGGCGCTCGCCGAGATCGTCATGAAG-CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG-CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA---GAA-AGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTA-AAAAAAATATATATATACTTCAGCCCAATTTATTTCTAAGGAAA]
[-] EMBL CB673174 [GCTAAGCCCAAGATGTTGATGATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAATTTGAAGGGGAAGAAg ]
[-] EMBL CB627353 [ cTGATGATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTATAAAAAAATATATATATACTTCAGCC ]
[-] EMBL CB674913 [ ATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACTTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTA AGGAAAATATATATATACTTCAGCCCAATTTATTTCTAAGGAAA]
[-] EMBL CB639137 [ AAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTTTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTA ]
[-] EMBL CB637740 [ GGCGCGAACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGTTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAG GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGT ]
[+] EMBL AU223076 [ cgGGNTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGCCGNCGCTCAAGGCCAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCNCCGAGATCGTCATGAAG CAGGACGTCNCGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGCAATGTATAAAaaa ]
[+] EMBL BM419823 [ GTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAGCCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGC ATGTATAAATTTCAGCATTA AAAA ]
[+] EMBL AU108933 [ GTACCCAATGGTGAC CTACGTGTTCAAGGACCCCATGGCCATCCACTGCGCAGGGNCTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAAaaa ]
consensusID : consensus_15333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence
[ACTTGGCCCNNCGCTTTTNCCGAGGACCNTCGGGGTTTTTNCCGGTTGACCCNTTGGCCGGAAGNCCCGNCGCCGGACCTTTCNCCGGGTTTCNCCCGAGAAAGGTTGAACGCCGCCGGAACGTTGCTGCTNGGCGGTGCACGGCCGCCGGGGCTGACAAAACCCANATCTTCCCTCCCCAACGGGCCNCCCGTGCTCGTTACAGATTCGTGCCCTTGGGGCAAGATGGGACTGGATGG-CCACAAACTTTCTAC-GGNCAG-CCGNCGCGCGACATGCGGCT-CCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGGACCCCTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAAAAAAAA]
[+] EMBL AU032655 [ACTTGGCCCNNCGCTTTTNCCGAGGACCNTCGGGGTTTTTNCCGGTTGACCCNTTGGCCGGAAGNCCCGNCGCCGGACCTTTCNCCGGGTTTCNCCCGAGAAAGGTTGAACGCCGCCGGAACGTTGCTGCTNGGCGGTGCACGGCCGCCGGGGCTGACAAAACCCANATCTTCCCTCCCCAACGGGCCNCCCGTGCTCGTTACAGATTCGTGCCCTTGGGGCAAGATGGGACTGGATGG CCACAAACTTTCTAC GGNCAG CCGNCGCGCGACATGCGGCT CCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGGACCCCTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAAAAAAAA]
[+] EMBL AU097385 [ TGGATGGCCCACAAACCTTCTACGGGGCAGCCCGNCGCGCGACATGCGGCTCCCGGTACGTCGAGTATTACGNCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGG NACNTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 ACCGATCTCTCTAAACCCAAATACGCAACAAATACTCAATCGTCACATCTTAAAAAACAA 60
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 AGAAAAAGGAAGAGAGAGAGAGAGGGAAAACAAAAAAGAAAAGAAAAATCAATTCCCAAC 120
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CTTGCTGCTACAAATGCCTCAGGCTTAGCAACTCGACCTCCTCCCCCCTTCTCCCCTTCC 180
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 TCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCAT 240
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 TTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAA 300
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCC 360
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTC 420
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAGCACATCCGC 480
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 TCTGATGCAGGACTCGCCGCCATCCTCGCCGGAGACGGGACCCATTCCGCCCCAAGAAAC 540
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 TGCAGCTGGCGCCGGAAACAATGACAGCACTGTGGACCCCGTCGATCTCCCTGAGGACAA 600
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GTCGCTGGTGGAGGCGCAGCCTCAAGAACCCGGCTTCCCCTCGGCGGAATCTCAGGAGCC 660
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 TGGCTTGCCGGCGGCGCTCTCGAGGAAGGAGGATGATGCGGAGAGGGCGGCGGCGGCGGC 720
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GGCCTCGGAGATAAAGCAATCCGAGAAGAAGAACGGCGTGGCGGCGGGTGGTGATACCAA 780
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GATAAAGTGCGACGAGAACGGCGTGGACGAGGGCTTCCCGTACGCGCGGCCGTCGGTTTG 840
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CGAGCTGTACGGCGACGTCCGCGTCAGCCCCAAGCAGAAGACCATTTACGTCGTGAACCC 900
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GTCGGGCGCCGGCGGCTTCGACGAGAACGGCGAGAAGCGGCTCCGGCCCTACGCCCGCAA 960
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GGACGATTTCCTCCTCCCGGGCGTGGTGGAGGTGACTATCAAGTCCGTGCCCTCCGAGGC 1020
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GGCGGCCCCCAAGTGCACGAAGCAGCACGCCGTCCCCGCCGTGGTGTTCTCCGTGGCCGG 1080
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GTACACGGACAACTTCTTCCACGACATGACCGATGCCATGATCCCGCTATTCCTGACGAC 1140
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCA 1200
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGA 1260
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCAT 1320
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTT 1380
consensus_15333#1 ------------------------------------------------------------
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 CCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGG 1440
consensus_15333#1 -GCTAAGCCCAAGATGTTGATGATCGAGAGGAAGGGCACCCG-CAAGCTGCTCAACCTGC 58
consensus_15333#2 -------------------------------------ACTTGGCCCNNCGCTTTTNCCGA 23
consensus_15333#0 GATGCGGCCGCGGATGCTGATCATCTCCCGCGCCGGCACGCG-CAAGCTGCTGAACCTCG 1499
** * * *** *
consensus_15333#1 GCGACGTGGCCGCGCTCTGCGAG-GACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGC 117
consensus_15333#2 GGACCNTCGGGGTTTTTNCCGGTTGACCCNTTGGCCGGAAGNCCCGNCGCCGGACCTTTC 83
consensus_15333#0 AGGAGGTGGCCGCGG-CCGCGACGGAGCTTGGTTTCAACGTGACGGTGGCGGAGGCCGGT 1558
* * * ** ** * * * ** * *
consensus_15333#1 GCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGC--GGACGT-GCTGCTGG-CGGT 173
consensus_15333#2 NCCGGGTTTCNCCCGA-----GAAAGGTTGAACGCCGCCGGAACGTTGCTGCTNGGCGGT 138
consensus_15333#0 GCTGACGTGCCCGCGTTCGCGGCGCTGGTGAACTCGGC--GGACGT-GCTGCTGG-CCGT 1614
* * * * * * * * ***** * ** * **** ****** * * **
consensus_15333#1 GCACGGC-GCCGGG-CTGACAAA--CCAGATCTTCCT--CCCAACGGGCGCC--GTGCTC 225
consensus_15333#2 GCACGGCCGCCGGGGCTGACAAAACCCANATCTTCCCTCCCCAACGGGCCNCCCGTGCTC 198
consensus_15333#0 GCACGGC-GCCGGG-CTGACGAA--CCAGATCTTCCT--CCCGGCGGAGGCC--GTGGTG 1666
******* ****** ***** ** *** ******* *** *** * *** *
consensus_15333#1 GT-ACAGAT-CGTGCCGT-GGGGCAAGATGG-ACTGGATGGCCACAAACTT-CTACGGGC 280
consensus_15333#2 GTTACAGATTCGTGCCCTTGGGGCAAGATGGGACTGGATGGCCACAAACTTTCTACGGNC 258
consensus_15333#0 GT-GCAGAT-CGTGCCGT-GGGGGAACATGG-ACTGGATGGCGACCAACTT-TTACGGGC 1721
** ***** ****** * **** ** **** ********** ** ***** ***** *
consensus_15333#1 AGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGA 340
consensus_15333#2 AGCCGNCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGA 318
consensus_15333#0 AGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGA 1781
***** ** * ******* ************ ***** ****** *************
consensus_15333#1 CGCTCAAGGACAAGTACCCAAGGGACCACTACGTGTTCAAGGACCCCATGGCCATCCACG 400
consensus_15333#2 CGCTCAAGGACAAGTACCCAAGGGACCCCTACGTGTTCAAGGACCCCATGGCCATCCACG 378
consensus_15333#0 GCCTGAAGCACAACTACTCGCGAGATCACATGGTGTTCAAGGACCCCAAGGCGCTCCACG 1841
** *** **** *** * * ** * * **************** *** ******
consensus_15333#1 CGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGA 460
consensus_15333#2 CGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGA 438
consensus_15333#0 CACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCA 1901
* ***** **** * * ******* ** ***************** *** ** * *
consensus_15333#1 CAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAG---------- 510
consensus_15333#2 CAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAG---------- 488
consensus_15333#0 CCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATC 1961
* ** *** *** ******* *********** ***** * **
consensus_15333#1 --GAGGAGCGC---CGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATG 565
consensus_15333#2 --GAGGAGCGC---CGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATG 543
consensus_15333#0 CCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACG 2021
* * *** * * ** * * * * ** * * * *
consensus_15333#1 TAGGATGTTTTGATTTTATATT--TATATTGTAATATTGAGTTAATCA-ATG-TAATTTA 621
consensus_15333#2 TAGGATGTTTTGATTTTATATT--TATATTGTAATATTGAGTTAATCA-ATG-TAATTTA 599
consensus_15333#0 ACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGAT 2081
* ** *** * ********* * ** * ** * *** * **
consensus_15333#1 TTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTG 681
consensus_15333#2 TTTCGTTGGAAAAAAAA------------------------------------------- 616
consensus_15333#0 CTTAACCGGAGGAGAAC--CATCAGTTGTTGGCGAGGCGGTGGAAGCTTTTCGCATATTG 2139
** *** *
consensus_15333#1 TTGAATGTAAAAGAAAGAAAGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTA 741
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 GTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAA 2199
consensus_15333#1 AAAAAAATATATATATACTTCAGCCCAATTTATTTCTAAGGAAA---------------- 785
consensus_15333#2 ------------------------------------------------------------
consensus_15333#0 AGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTA 2259
consensus_15333#1 ---------------------------------
consensus_15333#2 ---------------------------------
consensus_15333#0 TACATTCTTTTCTACTAATACGGGAGCCAACTA 2292
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||