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Oryza sativa
cluster # 15337 cluster # 15337       Sequences # 21       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15337#0 length = 519 sequences # 5  
consensus_15337#1 length = 508 sequences # 9  
consensus_15337#2 length = 490 sequences # 6  
consensus_15337#3 length = 248 sequences # 1  

consensusID : consensus_15337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 519
fasta sequence
                              [GTCACTCATCAAGCGAAGCAAATCCATCAT-CCACCAAATC-AAAGGCACGTAAGTGAGCACCAACAGCTGCATCGGCCATGGCTCGCGC-GCTCGTTCTCGTCGTGATCCTCCTCGCCGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGAATGAGTAAGAGTGAAGCTCAAGTGAATGATTCCTAATACCT-GGAATA-TTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTT-ATTTTTTTTTGTTTATCACT-ACCTCTACCTATGTTGTTGATTGATCATGTTAATCATGCAACATTATGATTTAATATAAGTTGGATGAAGATCTTCGTTTCCCGTTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120932             [GTCACTCATCAAGCGAAGCAAATCCATCAT CCACCAAATC AAAGGCACGTAAGTGAGCACCAACAGCTGCATCGGCCATGGCTCGCGC GCTCGTTCTCGTCGTGATCCTCCTCGCCGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGAATGAGTAAGAGTGAAGCTCAAGTGAATGATTCCTAATACCT GGAATA TTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTT ATTTTTTTTTGTTTATCACT ACCTCTACCTATGTTGTTGATTGATCATGTTAATCATGCAACATTATGATTTAATATAAGTTGGATGAA                                      ]
[+] EMBL AU101246             [                   AAATCCATCATCCCACCAAATCAAAAGGCACGTAAGTGAGCACCAACAGTTGCATCGGCCATGGCTCGCGCGGTTCGTTCTCGTCGTGATCCTCCTCGCCGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGAATGAGTAAGAGTGAAGCTCAAGTGAATGATTCCTAATACCT GGAATA TTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTT ATTTTTTTTTGTTTATCACT ACCTCTACCTATGTTGTTGATTGATCATGTTAATCATGCAACATTATGATTTAATATAAGTTGGATGAAGATCTTCGTTTCCCGTTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU165632             [                    AATCCATCAT CCACCAAATC AAAGGCACGTAAGTGAGCACCAACAGCTGCATCGGCCATGGCTCGCGC GCTCGTTCTCGTCGTGATCCTCCTCGCCGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGAATGAGTAAGAGTGAAGCTCAAGTGAATGATTCCTAATACCT GGAATA TTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTT ATTTTTTTTTGTTTATCACT ACCTCTACCTATGTTGTTGATTGATCATGTTAATCATGCAACATTATGATTTAATATAAGTTGGATGAAGATCTTCGTTTCC    AAAAAAAAAAAAAA       ]
[+] EMBL AU064101             [                   anATCCATCAT CCACCAAATC AAAGGCACGTAAG AAGCACCAACAGCTGCATCGGCCATGGCTCGCGC GCTCGTNCTCGTCGTGATCCTCCTCGCCGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCNCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGANTGAGTAAGAGTGAAGCTCAAGTGAATGATTCCTAATACCTGGGAATA TTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTTAATTTTTTTTTGTTTATCACTAACCTCTACCTATGTNGTTGATTGANCATGTTAATCATG AACATTA                                                             ]
[+] EMBL AU064105             [                   anATCCATCAT CCACCAAATC AAAGGCACGTAAG AAGCACCAACAGCTGCATCGGCCATGGCTCGCGC GCTCGTTCTCGTCGTGATCCTCCTCGCCGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGANTGAGTAAGAGTGAAGCTCAAGTGAATGATTCCTAATACCT GGAATATTTGACCAAA                                                                                                                                                                                     ]


>consensus_15337#0 GTCACTCATCAAGCGAAGCAAATCCATCATCCACCAAATCAAAGGCACGTAAGTGAGCAC CAACAGCTGCATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCCA TCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGG CCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAACGGAAG AGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGAATGAGTAAGAGTGAAG CTCAAGTGAATGATTCCTAATACCTGGAATATTGACCAAACATATATATGCCAGACATCC TTTGTTAAGGCTAACATAGCCTCATTTTTTTTATTTTTTTTTGTTTATCACTACCTCTAC CTATGTTGTTGATTGATCATGTTAATCATGCAACATTATGATTTAATATAAGTTGGATGA AGATCTTCGTTTCCCGTTAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15337#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 508
fasta sequence
                              [TCACCCACCAAGCGAAGAANACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAG-CTACATCGGCCATGGCTCGCG-CGCTCGTTCTCGTCGTGATCCT-CCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG-ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCG-ACGCG-CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT-GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTC-TTCATCCCAAGAACATTGATCAAGCATATAT-GTCC-TACCCTTCC-TTCATAAAGGCTAACAGAGCCTCATTTTTATTTTT-ATTTTTATTTTTTA-TTGCTTTCTTCTG-TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGATATTTGTTTCCAAAAATTCAAAAA]

[+] EMBL AK107558             [TCACCCACCAAGCGAAGCAAACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAG CTACATCGGCCATGGCTCGCG CGCTCGTTCTCGTCGTGATCCT CCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCG ACGCG CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTCTATTTTT ATTTTTATTTTTTA TTGCTTTCTTCTG TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGAT                       ]
[+] EMBL AU064117             [               AGAANACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAG CTACATCGGCCATGGCTCGCG CGCTCGTTCTCGTCGTGATCCT CCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCG ACGCG CCCGCTGAGAGCNCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTTCATCCCAAGAACATTGATCAAGCATATAT GTCCTTACCCTTCCTTTCATAAAGGTTNACAGNG CTTATTTTTATTTTA ATTTTAATTTTTAANTTG TTTC TCTG TTGATT ATCGGGTTAATCATG NATAT                                                   ]
[+] EMBL AU064120             [               AGAANACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAG CTACATCGGCCATGGCTCGCG CGCTCGTTCTCGTCGTGATCCT CCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCG ACGCG CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGTTGGATGCCTGATCGAGTAATAATGAAGTCCAAGTGGATAATTC TTCATCCCAAGGACATTGATCAAGCATATATGGTCC TACCCTTNC TTCATAAAGGNTTACAGAGCCTCA TTTTATTTTTAATTTTAATTTTTAA TTG TTTCTTCTG T                                                                              ]
[+] EMBL C99005               [                   NACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAG CTACATCGGCCATGGCTCGCG CGCTCGTNCTCGTCGTGATCCT CCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCN ACGCG CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTNAATAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTTAATTTTA ATTTTNATTTTTAA TTGCTTTCTTCTGTTTGATTGATCGTGTTAATCATGCAATATGA                                                 ]
[+] EMBL AU165741             [                    ACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAG CTACATCGGCCATGGCTCGCG CGCTCGTTCTCGTCGTGATCCT CCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCG ACGCG CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTTTATTTTT ATTTTTATTTTTTA TTGCTTTCTTCTG TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGATATTTGTTTCCAAAAA        ]
[+] EMBL C98616               [                                                   gtTAGGTGAGCACCAACAGTTTACATCGGCCATGGCTCGCGCCGCTCGTTCTCGTCGTGATCCT CCTCGTCGCTATCGCAGTGGCACCNTTCGCGGAAGCCTCGTACAGTCACCGGTGGCTCCAGGGTATTGTTGNCCTCCGAACGCGTCCCGCTGAGAGCCCGGCTGGG CTGCGGCGGCCCCAGGCCCAGCGGAAGAGNCCANCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTTTATTTTT ATTTTTATTTTTTA TTGCTTTCTTCTG TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGATATTTGTTTCCCATTGTTCAAAAA]
[+] EMBL AU182553             [                                                                             CGGCCATGGCTCGCG CGCTCGTTCTCGTCGTGATCCTCCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCG ACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCG ACGCG CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTTTATTTTT ATTTTTATTTTTTA TTGCTTTCTTCTG TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGATATTTGTTTCCAAAAA        ]
[-] EMBL AK071282             [                                                                                                                                                                     CGGTGGCTCCAGGGTATTGTTGGCCTCCG ACGCG CCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCT GATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTTTATTTTT ATTTTTATTTTTTA TTGCTTTCTTCTG TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGATATTTGTTTC              ]
[-] EMBL AU225930             [                                                                                                                                                                                                                                                                                                                                ccgcTAATTC TTCATCCCAAGAACATTGATCAAGCATATAT GTCC TACCCTTCC TTCATAAAGGCTAACAGAGCCTCATTTTTATTTTT ATTTTTATTTTTTA TTGCTTTCTTCTG TTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAGATATTTGagcggc            ]


>consensus_15337#1 TCACCCACCAAGCGAAGAANACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGA GCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCC GCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTG TTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCG GAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAAT AATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTA CCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATTTTTATTTTTATTTTTTATTGC TTTCTTCTGTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATG AAGATATTTGTTTCCAAAAATTCAAAAA



consensusID : consensus_15337#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 490
fasta sequence
                              [GCAAACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATTTTTATTTTTATTTTTTATTGCTTT-CTTCTGTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU163671             [GCAAACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATTTTTATTTTTATTTTTTATTGCTTT CTTCTGTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAAAAAAAAAAA              ]
[+] EMBL AU163669             [GCAAACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATTTTTATTTTTATTTTTTATTGCTTT CTTCTGTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAAAAAAAAAAA              ]
[+] EMBL C73326               [    ACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGCCCGCTGAGAGCGCGGNTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGANTCCAGCAGTNAATCTGCTCCATCTCCGAGCGCCGCTNATGCCTGATCGAGTAATAATGANGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTNCTTCATAAAGGCTAACAGAGCCTCATTTTAATTTTAAATTTAATTTTTNATTGCTTT CTTCTGTTGATTNATCGTGGTAATCATGCAATATGATG                                             ]
[+] EMBL C72848               [       CATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTNACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCNTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTANCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTAATTTTAATTTTAATTTTTAATGGCTTTCCTCCGGTTGATTGATCGGGTAAATCANGC ATANGATGAGT                                          ]
[+] EMBL C71854               [                                        GTNAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTCCTTCATAAAGGNTAACAGAGCCTCATTTTT                                                                                                               ]
[+] EMBL AU098322             [                                                                                                                                                                                                                                             GTGAATNTGCTCCATNTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTNTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTCCTTCATAAAGGCTAACANAGCCTCATTTTTATTTTTATTTTTATTTTTTATTGCTTT CTTCTGTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATNAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15337#2 GCAAACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACAT CGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGCCGCTATCGCAGTGGCAC CGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGGCCTCCGACGCGC CCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTG AATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGA ATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCTACCCTTCCTTCATAAAG GCTAACAGAGCCTCATTTTTATTTTTATTTTTATTTTTTATTGCTTTCTTCTGTTGATTG ATCGTGTTAATCATGCAATATGATGAGTTAATATAAGTTCGATGAAAAAAAAAAAAAAAA AAAAAAAAAA



consensusID : consensus_15337#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence
                              [ACAAGGGGAGGACGAGACAAGGGGAGGACGAGACAAGGAGAGGACGAGACAAGGGGAGGACGAGACAAGGGGACCTGGAATATTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTTATTTTTTTTTTGTTTATCACTACCTCTACCTATGTTGTTGATTGATCATGTTAATCGTGCAACATTATGATTTAATATAAGTTGGATGAAGATCTTCGTTTCCCG]

[+] EMBL CA767237             [ACAAGGGGAGGACGAGACAAGGGGAGGACGAGACAAGGAGAGGACGAGACAAGGGGAGGACGAGACAAGGGGACCTGGAATATTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTTATTTTTTTTTTGTTTATCACTACCTCTACCTATGTTGTTGATTGATCATGTTAATCGTGCAACATTATGATTTAATATAAGTTGGATGAAGATCTTCGTTTCCCG]


>consensus_15337#3 ACAAGGGGAGGACGAGACAAGGGGAGGACGAGACAAGGAGAGGACGAGACAAGGGGAGGA CGAGACAAGGGGACCTGGAATATTGACCAAACATATATATGCCAGACATCCTTTGTTAAG GCTAACATAGCCTCATTTTTTTTATTTTTTTTTTGTTTATCACTACCTCTACCTATGTTG TTGATTGATCATGTTAATCGTGCAACATTATGATTTAATATAAGTTGGATGAAGATCTTC GTTTCCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15337#1      -TCACCCACCAAGCGAAGAANACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTG 59
consensus_15337#2      -----------------GCAAACCCATCGCATCAACCACCAAATCGAAGGCACGTAGGTG 43
consensus_15337#0      GTCACTCATCAAGCGAAGCAAATCCAT-----CATCCACCAAATCAAAGGCACGTAAGTG 55
consensus_15337#3      ------------------------------------------------------------
                                                                                   

consensus_15337#1      AGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGC 119
consensus_15337#2      AGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGC 103
consensus_15337#0      AGCACCAACAGCTGCATCGGCCATGGCTCGCGCGCTCGTTCTCGTCGTGATCCTCCTCGC 115
consensus_15337#3      ------------------------------------------------------------
                                                                                   

consensus_15337#1      CGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATT 179
consensus_15337#2      CGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATT 163
consensus_15337#0      CGCCATCGCGGTGGCGCCGTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATT 175
consensus_15337#3      ------------------------------------------------------------
                                                                                   

consensus_15337#1      GTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGC 239
consensus_15337#2      GTTGGCCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGC 223
consensus_15337#0      GTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGCCGGCCCCAGGCCCAAC 235
consensus_15337#3      ------------------------------------------------------------
                                                                                   

consensus_15337#1      GGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAA 299
consensus_15337#2      GGAAGAGTCCAGCAGTGAATCTGCTCCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAA 283
consensus_15337#0      GGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGC---TGATGCCTGAATGAGTAA 292
consensus_15337#3      --------ACAAGGGGAGGACGAGACAAGGGGAGGACGA-GACAAGGAGAGGACGAGACA 51
                                **   *     *                *      * *   *   ***  *

consensus_15337#1      TAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCT 359
consensus_15337#2      TAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATCAAGCATATATGTCCT 343
consensus_15337#0      GAGTGAAGCTCAAGTGAATGATTCCTAATACCTGGAATATTGACCAAACATATATATGCC 352
consensus_15337#3      AGGGGAGGACGAGACAAGGGGACCT--------GGAATATTGACCAAACATATATATGCC 103
                           ** *   *    *      *          *** ***** *** ******* * * 

consensus_15337#1      ACCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATT--TTTATTTTTATTTTTTAT 417
consensus_15337#2      ACCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATT--TTTATTTTTATTTTTTAT 401
consensus_15337#0      AGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTTA-TTTTTTTTTGTTTATCAC 411
consensus_15337#3      AGACATCCTTTGTTAAGGCTAACATAGCCTCATTTTTTTTATTTTTTTTTTGTTTATCAC 163
                       *  * *****  * ********** ************ **  *** ***** *** * * 

consensus_15337#1      TGCTTTCTTCT-----GTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAA 472
consensus_15337#2      TGCTTTCTTCT-----GTTGATTGATCGTGTTAATCATGCAATATGATGAGTTAATATAA 456
consensus_15337#0      TACCTCTACCTATGTTGTTGATTGATCATGTTAATCATGCAACATTATGATTTAATATAA 471
consensus_15337#3      TACCTCTACCTATGTTGTTGATTGATCATGTTAATCGTGCAACATTATGATTTAATATAA 223
                       * * *    **     *********** ******** ***** ** **** *********

consensus_15337#1      GTTCGATGAAGATATTTGTTTCC----AAAAATTCAAAAA-------- 508
consensus_15337#2      GTTCGATGAAAAAAAAAAAAAAA----AAAAAAAAAAA---------- 490
consensus_15337#0      GTTGGATGAAGATCTTCGTTTCCCGTTAAAAAAAAAAAAAAAAAAAAA 519
consensus_15337#3      GTTGGATGAAGATCTTCGTTTCCCG----------------------- 248
                       *** ****** *                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)