cluster # 1534

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Oryza sativa
cluster # 1534 cluster # 1534 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1534#0 length = 634 sequences # 1

consensus_1534#1 length = 546 sequences # 1

consensusID : consensus_1534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CTCCATTGCCCGCTGATGGATCGCATCAGCAATATGTGCGGTCAATGAATCATGACGAGGATGGGCCCATACCAAATAAATACGTTCAGACTGCATAATTTTACCTCCACGTTAAGTTCTGGAGCGCACTTTACGCAGGCGGCATAATCCTGTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTTCACTAATGCGGATGAATATGTCTGACTTTGCCACTTTCTTTGCCGTGGCCCGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGCCATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGAAGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGACGAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTCAAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTTACTGGTTGGTTTCACACGTGAATATCCTGATTTAAAGTCGAGCTCACAACTGACGACTCTCTTGTCGATATCGTCCAACAGGGCTTTGACGCTGGCGTTCGACTTAGT]

[+] EMBL CF323963             [CTCCATTGCCCGCTGATGGATCGCATCAGCAATATGTGCGGTCAATGAATCATGACGAGGATGGGCCCATACCAAATAAATACGTTCAGACTGCATAATTTTACCTCCACGTTAAGTTCTGGAGCGCACTTTACGCAGGCGGCATAATCCTGTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTTCACTAATGCGGATGAATATGTCTGACTTTGCCACTTTCTTTGCCGTGGCCCGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGCCATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGAAGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGACGAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTCAAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTTACTGGTTGGTTTCACACGTGAATATCCTGATTTAAAGTCGAGCTCACAACTGACGACTCTCTTGTCGATATCGTCCAACAGGGCTTTGACGCTGGCGTTCGACTTAGT]




>consensus_1534#0
CTCCATTGCCCGCTGATGGATCGCATCAGCAATATGTGCGGTCAATGAATCATGACGAGG
ATGGGCCCATACCAAATAAATACGTTCAGACTGCATAATTTTACCTCCACGTTAAGTTCT
GGAGCGCACTTTACGCAGGCGGCATAATCCTGTAAACGTGATGATTCAGGATGAGTTAAT
GAAGGATTTTCACTAATGCGGATGAATATGTCTGACTTTGCCACTTTCTTTGCCGTGGCC
CGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGC
CATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGA
AGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGAC
GAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTC
AAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTTACTGGTTGGTTTCA
CACGTGAATATCCTGATTTAAAGTCGAGCTCACAACTGACGACTCTCTTGTCGATATCGT
CCAACAGGGCTTTGACGCTGGCGTTCGACTTAGT

consensusID : consensus_1534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [CTGACTTTGCCACTTTCTTTGCCGTGGCCCGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGCCATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGAAGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGACGAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTCAAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTTTACTGGTTGGCATTAAACACTTTTGCCGCATGTTGCTGTGCAATGCATGGCGCGCCTTCGTGAATCAGCAGATCGCCCATCGCTACGTCGGCGTTGCACAAGTCGGCACGGAACAGCGCCTCACCAAAGTATTCCACAAACTGATTCCCCGCCGGATGGCGACGGAAAAATTCGCCGCCCTGATGACCAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGACC]

[+] EMBL CF307172             [CTGACTTTGCCACTTTCTTTGCCGTGGCCCGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGCCATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGAAGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGACGAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTCAAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTTTACTGGTTGGCATTAAACACTTTTGCCGCATGTTGCTGTGCAATGCATGGCGCGCCTTCGTGAATCAGCAGATCGCCCATCGCTACGTCGGCGTTGCACAAGTCGGCACGGAACAGCGCCTCACCAAAGTATTCCACAAACTGATTCCCCGCCGGATGGCGACGGAAAAATTCGCCGCCCTGATGACCAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGACC]




>consensus_1534#1
CTGACTTTGCCACTTTCTTTGCCGTGGCCCGTAATCAAAGCTTTCGTGCAGCGGGCGATG
AGTTAGGCTTATCCTCGTCCGCCATTAGCCATAGTATTAAAACACTGGAACAACGTCTTA
AAATTCGCTTATTCAATCGGACAACCCGAAGCGTATCGTTAACGGAAGCGGGTTCTAATC
TCTATGAACGATTGCGCCCAGCTTTCGACGAAATTCAGATCATGTTAGATGAGATGAATG
ATTTTCGTCTGACACCGACAGGAACGCTCAAAATCAATGCCGCCCGGGTAGCTGCACGTA
TATTTTTAATGTCTTTACTGGTTGGCATTAAACACTTTTGCCGCATGTTGCTGTGCAATG
CATGGCGCGCCTTCGTGAATCAGCAGATCGCCCATCGCTACGTCGGCGTTGCACAAGTCG
GCACGGAACAGCGCCTCACCAAAGTATTCCACAAACTGATTCCCCGCCGGATGGCGACGG
AAAAATTCGCCGCCCTGATGACCAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAA
TCGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1534#0      CTCCATTGCCCGCTGATGGATCGCATCAGCAATATGTGCGGTCAATGAATCATGACGAGG 60
consensus_1534#1      ------------------------------------------------------------
                                                                                  

consensus_1534#0      ATGGGCCCATACCAAATAAATACGTTCAGACTGCATAATTTTACCTCCACGTTAAGTTCT 120
consensus_1534#1      ------------------------------------------------------------
                                                                                  

consensus_1534#0      GGAGCGCACTTTACGCAGGCGGCATAATCCTGTAAACGTGATGATTCAGGATGAGTTAAT 180
consensus_1534#1      ------------------------------------------------------------
                                                                                  

consensus_1534#0      GAAGGATTTTCACTAATGCGGATGAATATGTCTGACTTTGCCACTTTCTTTGCCGTGGCC 240
consensus_1534#1      -------------------------------CTGACTTTGCCACTTTCTTTGCCGTGGCC 29
                                                     *****************************

consensus_1534#0      CGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGC 300
consensus_1534#1      CGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTTAGGCTTATCCTCGTCCGCCATTAGC 89
                      ************************************************************

consensus_1534#0      CATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGA 360
consensus_1534#1      CATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAACCCGA 149
                      ************************************************************

consensus_1534#0      AGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGAC 420
consensus_1534#1      AGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGAC 209
                      ************************************************************

consensus_1534#0      GAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTC 480
consensus_1534#1      GAAATTCAGATCATGTTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTC 269
                      ************************************************************

consensus_1534#0      AAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTT-ACTGGTTGGTTTC 539
consensus_1534#1      AAAATCAATGCCGCCCGGGTAGCTGCACGTATATTTTTAATGTCTTTACTGGTTGGCATT 329
                      ********************************************** *********  * 

consensus_1534#0      ACACGTGAATATCCTGATTTAAAGTCGAGCTCACAACTGACGACTCTCTTGTCGATA--T 597
consensus_1534#1      AAACACTTTTGCCGCATGTTGCTGTGCAATGCATGGCGCGCC-TTCGTGAATCAGCAGAT 388
                      * **     *  *     **   **  *   **   *   *   **     **   *  *

consensus_1534#0      CGTCCAACAGGGCTTTGACGCTGGC--GTTCGACTTAGT--------------------- 634
consensus_1534#1      CGCCCATCGCTACGTCGGCGTTGCACAAGTCGGCACGGAACAGCGCCTCACCAAAGTATT 448
                      ** *** *    * * * ** **      *** *   *                      

consensus_1534#0      ------------------------------------------------------------
consensus_1534#1      CCACAAACTGATTCCCCGCCGGATGGCGACGGAAAAATTCGCCGCCCTGATGACCAGGGC 508
                                                                                  

consensus_1534#0      --------------------------------------
consensus_1534#1      AATCAAACGCGCTGTTACCTTGATTGACATAATCGACC 546