These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1957 fasta sequence [GGAGGTGAGGTTAACTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGNCACCCCCCTCNCCATCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCTTCCGCAATCTCTCCTCTCCTCTTGGCGACAG-TACCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTC-GCTCCACC-GCCCCCTCTCTGCCATGGCAGTTGCCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGAC-AGGCTGTCTC-ACCAC-AAGTTGCCTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTATCAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGACTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCT-GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG-AGGATGGG-AAGAAGATTGTTTTCCACACCTTCAGTAACACT-GGCT-GGCTTTGCT-ATGGGGTG-ATACTGGAGAATTTACA-GAGGCAGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG-TGTCGTCGCCT-CATGTCGACCACTACCGG-AGCAATCCAGAGCT-GT-ATACCTCTCAGCTCACTGAATTCATGG-AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG] [+] EMBL OSS14411A [GGAGGTGAGGTTAACTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGNCACCCCCCTCNCCATCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCTTCCGCAATCTCTCCTCTCCTCTTGGCGACAG TACCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGGTTCCACCGGCCCCTTCTCTGCCATGGCAGTTGCCGCTTTTGCCGNCGTCTCCTTCCTTGAGCTGCCTGACAAGNTTGTCTCAACCACAAAGTTGCCTGACAAAAaccngg ] [+] EMBL AK099901 [ CTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGGCACCCCCCTCCCCGTCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCTTCCGCAATCTCTCCTCTCCTCTTGGCGACAGCTACCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTC GCTCCACC GCCCCCTCTCTGCCATGGCAGTTGCCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGAC AGGCTGTCTC ACCAC AAGTTGCCTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTATCAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGACTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCT GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG AGGATGGG AAGAAGATTGTTTTCCACACCTTCAGTAACACT GGCT GGCTTTGCT ATGGGGTG ATACTGGAGAATTTACA GAGGCAGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGG ] [+] EMBL C97505 [ GGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTC GCTCCACC GCCCCCTCTCTGCCATGGCAGTTGCCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGAC AGGCTGTCTC ACCAC AAGTTGCCTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTATCAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGACTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTNACGANTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCTNGGAATCTGCCGG ] [+] EMBL AU056704 [ CCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCT GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGGAAGGATGGGAAAGAAGATTGTTTTCCANACCTTCAGTAACACTGGGCTGGGCTTTGCTAATGGGGTGAATACTGGAGAA TTACAGGAGGgcang ] [+] EMBL CB633883 [ CATCCTCGTCATCGCCGGATGTTCTGTACCGCT GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG AGGATGGG AAGAAGATTGTTTTCCACACCTTCAGTAACACT GGCT GGCTTTGCT ATGGGGTG ATACTGGAGAATCTACA GAGGCAGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCATAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAG ] [+] EMBL BI118771 [ ATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG AGGATGGG AAGAAGATTGTTTTCCACACCTTCAGTAACACT GGCT GGCTTTGTT ATGGGGTG ATACTGGAGAATCTACA GAGGCAGGATCCTTCTGCAATGGACAGAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCATAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCGGCCAAAATGC ] [-] EMBL CB633884 [ CATGAAAAAACACAGCATAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTAGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAGAACAAAAAGGAAAATGGTGGTTACTGACTCAAAcatataga ] [-] EMBL CB677820 [ CACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAAAAGAAAGGAAAATGGTGGTTACTG ] [-] EMBL CB678240 [ CACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGG ] [-] EMBL CB671489 [ GGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCACCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCCCAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGACCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCCCTCCCGG AGCAATCCAGAGCT GT ATCCCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCCCTCCCAGGCGAAGGAGGAGGAGGAGGAGGTCCCCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTCCCATAAAATAGAGATAGGCATACATCCCAACTGTTATTTTCATTCATTTTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGCCAGGAGAGCGAGTCCACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACCCGTTGCTAGAAGAAACCAAAAAGGAAAAGGGGGGTTCCTGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGA ] [-] EMBL CB638687 [ AGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGG ] [+] EMBL BM419744 [ GAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACC ACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTAGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACCAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAA ] [+] EMBL AU056705 [ GAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCTGGT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU161211 [ aACTTTGTTGTCGTCGCCTCCATGTCGACCACTACCGGAAGCAATCCAGAGCT GTAATACCTCTCAGCTCACTGAATTCATGGAAGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL BI809388 [ ccgCTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTAGTGGGATTGACTTTCAATCCATTGTAAACACGTTGCTAGAAGAAAAa ] [+] EMBL CF321562 [ CTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG] [+] EMBL CF298666 [ TCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTATAAGAAAACAAAAAGGAAAATGGTGGTTACTGA ] consensusID : consensus_15340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 794 fasta sequence [CTCTAGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTTTGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAATTTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCAGCCCCTCTCTGCCATGGAGTTGCCGCCTTTGCCGCGTCTCCTCCTTGAGCTGCCTGAAGGCTGCTCACCACAAGTTGCCTGCNCACCGTGGATGCCGAGCTGCGTCTCATTCCAGCCACANGCCCGATGATAGCAGCACTTCTGTTCTGCATGCTCGCTGACTTCTGCACGCATCTGAACTTGACCCGGTAAGCCCTCTGATNTTGCTGCATCAACGTTACACTATCAAGTTCCAATCTACTGANNAGAGATGACATGCAGCCTCCTGATNNCGGTGTCGCCTTGTTTGCGAACCAGGCTGGGACTCTTGAGTTTAAACAGGGTTCTCGGGTGGTAGCAACCCTAGAAACCATGTACTCAGTTCTGAGACTTCCTCAGCACTTTTCATTTAGAGGGGAAAGAAATAAACCCCTTTCCGGGGGAAAAATTCCCAGAAAAGAGTGCCC] [+] EMBL AW155126 [CTCTAGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTTTGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAATTTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCAGCCCCTCTCTGCCATGGAGTTGCCGCCTTTGCCGCGTCTCCTCCTTGAGCTGCCTGAAGGCTGCTCACCACAAGTTGCCTGCNCACCGTGGATGCCGAGCTGCGTCTCATTCCAGCCACANGCCCGATGATAGCAGCACTTCTGTTCTGCATGCTCGCTGACTTCTGCACGCATCTGAACTTGACCCGGTAAGCCCTCTGATNTTGCTGCATCAACGTTACACTATCAAGTTCCAATCTACTGANNAGAGATGACATGCAGCCTCCTGATNNCGGTGTCGCCTTGTTTGCGAACCAGGCTGGGACTCTTGAGTTTAAACAGGGTTCTCGGGTGGTAGCAACCCTAGAAACCATGTACTCAGTTCTGAGACTTCCTCAGCACTTTTCATTTAGAGGGGAAAGAAATAAACCCCTTTCCGGGGGAAAAATTCCCAGAAAAGAGTGCCC] [+] EMBL CB638686 [ AGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTTTGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAATTTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCGCCCCCTCTCT ] consensusID : consensus_15340#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [GCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTGTGTCGTCGCCTCATGTCGACCACTACCGGAGCAATCCAGAGCTGTATACCTCTCAGCTCCCTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGGTGCCGGAGCCGC] [-] EMBL CB678239 [GCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTGTGTCGTCGCCTCATGTCGACCACTACCGGAGCAATCCAGAGCTGTATACCTCTCAGCTCCCTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGGTGCCGGAGCCGC] consensusID : consensus_15340#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [ACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCGT] [+] EMBL CF331791 [ACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15340#0 GGAGGTGAGGTTAACTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGN 60 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CACCCCCCTCNCCATCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCT 120 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 TCCGCAATCTCTCCTCTCCTCTTGGCGACAGTACCAGGAAACAAGGAAGGAGCAACGCAA 180 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCC 240 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 ACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAA 300 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCGCCCCCTCTCTGCCATGGCAGTTG 360 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGACAGGCTGTCTCACCACAAGTTGC 420 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTAT 480 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGA 540 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACT 600 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 ATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCT 660 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CGTCATCGCCGGATGTTCTGTACCTCTGGCATCTGCCGGACCCTAAGGTCTGCGGTGACT 720 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 CACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGC 780 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 ACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCC 840 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 TCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGA 900 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 TGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGGAGGATGGGAAGAAGATTGTTTTCC 960 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 ACACCTTCAGTAACACTGGCTGGCTTTGCTATGGGGTGATACTGGAGAATTTACAGAGGC 1020 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 AGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTG 1080 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 TCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCG 1140 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------------------------------------------------------------ consensus_15340#0 TAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTA 1200 consensus_15340#2 -----------------------------GCAAGGCCCGATGTCCTAGTTGTGGAGTCTA 31 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ------CTCTAGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTT 54 consensus_15340#0 ACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGT 1260 consensus_15340#2 ACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGT 91 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 TGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAAT 114 consensus_15340#0 TGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGC 1320 consensus_15340#2 TGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGC 151 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 TTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACA 174 consensus_15340#0 TATTGTCGTCGAAGCAGCCAAAATGCCCAC-AGCTGTACATATACAGCTCTGCTGACAGG 1379 consensus_15340#2 TATTGTCGTCGAAGCAGCCAAAATGCCCAC-AGCTGTACATATACAGCTCTGCTGACAGG 210 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 AGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAAT 234 consensus_15340#0 GTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAG 1439 consensus_15340#2 GTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAG 270 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 TTGACCTCTCCAATTCC-----ACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAA 289 consensus_15340#0 GTGAGAGCATGCGACTTTGTGTCG--TCGCCTCATGTCGACCACTACCGGAGCAATCCAG 1497 consensus_15340#2 GTGAGAGCATGCGACTTTGTGTCG--TCGCCTCATGTCGACCACTACCGGAGCAATCCAG 328 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 ACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCAG 349 consensus_15340#0 AGCTGTATACCTCTCAGCTCACTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGG 1557 consensus_15340#2 AGCTGTATACCTCTCAGCTCCCTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGG 388 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 CCCCTCTCTGCCATGGAGTTGCCGCCTTTGCCGCGTCTCCTCCTTGAGCTGCCTGAAGGC 409 consensus_15340#0 CGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAA 1617 consensus_15340#2 CGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAA 448 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 TGCTCACCACAAGTTGCCTGCNCACCGTGGATGCCGAGCTGCGTCTCATTCCAGCCACAN 469 consensus_15340#0 CTGCCATAAAATAGAGATA---GGCATACATACCAACTGTTATTTTCATTCATTCTTCAC 1674 consensus_15340#2 CTGCCATAAAATAGAGATA---GGCATACATACCAACTGTTATTTTCATTCATTCTTCAC 505 consensus_15340#3 ----------------ACA---GGAGAGCGAGTACACTACTGTTTTCTTTCGT------C 35 consensus_15340#1 GCCCGATGATAGCAGCACTTCTGTTCTGCATGCTCGCTGACTTCTGCACGCAT-CTGAAC 528 * * * ** * * * * * * consensus_15340#0 TGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTT 1734 consensus_15340#2 TGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTT 565 consensus_15340#3 TCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 95 consensus_15340#1 TTGACCCGGTAAGCCCTCTGATNTTGCTGCATCAACGTTACACTATCAAGTTCCAATCTA 588 * * * * * * * consensus_15340#0 TTTAGACAGGAGAGCGAGTACACTACTGTTTTC--TTTCGTCTCGTCTCATACTCTCATT 1792 consensus_15340#2 TTTAGACAGGAGAGCGAGTACACTACTGTTTTC--TTTCGTCTCGTCTCATACTCTCATT 623 consensus_15340#3 AAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCT--TACCGT------------------- 134 consensus_15340#1 CTGANNAGAGATGACATGCAGCCTCCTGATNNCGGTGTCGCCTTGTTTGCGAACCAGGCT 648 * * * * * * * * ** consensus_15340#0 GGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAAT 1852 consensus_15340#2 GGTGGGATTGACTTTCAATCAATTGTAAACACGTTGGT-GCCGGAGCCGC---------- 672 consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 GGGACTCTTGAGTTTAAACAGGGTTCTCGGGTGGTAGCAACCCTAGAAACCATGTACTCA 708 consensus_15340#0 GGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA 1912 consensus_15340#2 ------------------------------------------------------------ consensus_15340#3 ------------------------------------------------------------ consensus_15340#1 GTTCTGAGACTTCCTCAGCACTTTTCATTTAGAGGGGAAAGAAATAAACCCCTTTCCGGG 768 consensus_15340#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG 1957 consensus_15340#2 --------------------------------------------- consensus_15340#3 --------------------------------------------- consensus_15340#1 GGAAAAATTCCCAGAAAAGAGTGCCC------------------- 794 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||