These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1395 fasta sequence [CGCGCGCGCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC-GTCC-GCCTCTTCCACCCGGACACCG-CCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCAT-CCCCGGCGACCCCGCC-GC-CAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTA-CCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGG-AGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGG-CGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCT-CCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCA--CATTGGAGTATGATTTATTCAAACGCACGAATTTTACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK069244 [CGCGCGCGCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTCCACCCGGACACCG CCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCAT CCCCGGCGACCCCGCC GC CAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTA CCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGG AGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGG CGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCT CCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCA CATTGGAGTA ] [+] EMBL AU032427 [ GCGCGCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC ] [+] EMBL OSS14937A [ CGCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGNCGGCGCAGGTGATCTCCATGTACAAGGNCAAGAACATCAACTAC GTCC GGCTCTTCCACCCGGACAac ] [+] EMBL AU032423 [ GCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTNCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTTCAC ] [+] EMBL CB647944 [ GCGCACCCCCTGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTCCACCCGGACACCG CCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCAT CCCCGGCGACCCCGCC GC CAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTACCCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTA ] [+] EMBL AB027432 [ ACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTCCACCCGGACACCG CCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCAT CCCCGGCGACCCCGCC GC CAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTA CCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGG AGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGG CGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCT CCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCA ] [+] EMBL OSR09891A [ ACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTCCACCCGGACACCG CCGTCCTCGCCGCGCTCCGCAACTNCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGNGGTCAT CCCCGGCGNACCCGCC GCACAACGT CTCCCGGCCATGCGC ] [+] EMBL AB027431 [ ACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTCCACCCGGACACCG CCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCAT CCCCGGCGACCCCGCC GC CAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTA CCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGG AGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGG CGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCT CCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCA ] [+] EMBL OSR09901A [ ACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTAC GTCC GCCTCTTCCACCCGGACACCG CCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCATCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCCCGGCGACCCCGCCGGC CAAAGTNCTCCCGGCatc ] [+] EMBL CB684609 [ GGGACTCCCTGGCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTACTGTCCAGCCTCTTCCACCCGGACACCGTCCGGCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGGACAACGAGGACCTCGCCCGCCTCGCCTCCGAGCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGAGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCAT CCCCGGAGACCCCGCC GC CAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTA CCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCTCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGG AGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGG CGGTGGAGAAGGCGACAGGCGGGCATGCGGTGGAGC ] [-] EMBL CB684610 [ GCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTA CCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGG AGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGG CGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCT CCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCA CATTGGAGTATGATTTATTCAAACGCACGAA ] [-] EMBL CB647945 [ CGCGGAAGCGCGTGCAGATCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACATACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGGCCGGTGGAGAAGGCGCCGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCCCCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTTT CCGGCGGCGCCGGGACGCCGCGGCGCCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTTTTCCAGCCCGACATGACCGAAGTCTCCCATGTGGACTTCGCGGCCTCCAGCTAGATTAGGCCCGCCCCATTTCACATTTTTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATCCAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCCCCGGTGCTCTGATTTGGAAACGGGGTTCATTTGTTGTCGAT ] [+] EMBL AU082734 [ GCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCT CCGGCGGCGCCGGGACGCCGCGGCNNCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCA CATTGGAGTATGATTTATTCAAACGCACGAATTTTACGAAAAAAAAAAAAA ] [+] EMBL AU164658 [ TCCGCCACGTCTCCCGGCGNCGCCGGGACGCNGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGNCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCNNTTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGAaaaa ] [+] EMBL AU164659 [ CCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCNNTTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGAaaaa ] [+] EMBL AU075511 [ GAGGGCGTGGAGCAGCA TTCGGCCTNTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTNGTTTCGGTTCGATCTCATGTCNCCGGTGCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCA CATTGGNGTATGATTTATTCAAACGCACGAATTTTACGAGAAGATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI808412 [ TGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTTCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCACCCCCCCCAGTATGATTTATTCAAAaaaaaa ] consensusID : consensus_15346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1269 fasta sequence [GGAAAGGAGATACAGTTCTCAGATAGTTTCTGCTACCTTTGCTGCCGCGCGCTGCAGAAGATCGGCGAGATGGATGCTGTGTTGGTTACCGCCGCCATCTTCGGGTTGCTGCTCTGCGGCTGCTCGGTTTCAGGAGTGGAAGGTATCGGTGTGAACTATGGCATGATCGGCAACAACCTCCCGTCGCCGGACAAGGTCATCGCCCTGTACAGAGCCAGCAACATCACCGACATCCGCCTCTTCCACCCGGACACCACCGTGCTCGCCGCGCTCCGCGGCTCGGGCCTCGGCGTCGTGCTCGGCACGCTCAACGAGGACCTGGCACGCCTCGCCACCGACGCCTCGTTCGCGGCGTCGTGGGTCCAGTCGTACGTGCAGCCCTTCGCCGGCGCCGTCCGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCTGGGGACGAGGCGGCGAGCGTCCTCCCGGCCATGAGGAACCTCCAGTCGGCGCTGCGCGCCGCGGGGCTCGGCGTGCCGGTCACGACGGTCGTCGCGACGTCGGTGCTGGGCTCCTCGTACCCGCCGTCGCAGGGCGCGTTCTCCGAGGCCGCGCTGCCGACGGTGGCGCCGATCGTCTCCTTCCTGGCGTCGAGCGGGACGCCCCTGCTGGTGAACGTGTACCCGTACTTCGCCTACTCCGCCGACCCGTCGTCGGTGCGGCTCGACTACGCGCTGCTGTCGCCGTCGACGTCGGCGGCCGTGACGGACGGCGGTGTCACGTACACCAACATGTTCGACGCCATCCTGGACGCGGTGTACGCGGCGCTGGAGAAGGCGGGCGGGCAGGGCCTGGAGGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGGCGGCGGCGGGGCCGGCGCCAGCGTGGAGAACGCGGCGGCGTACAGCAACAACCTGGTGCGCCACGTCGGGCGCGGCACGCCGCGGCGGCCCGGGAAGGCCGTGGAGACGTACATCTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGAACTTCGGCCTGTTCCACCCGGACATGAGCGCGGTCTACCACGTCGACTTCTCGGCGTGATCATCTTAATCAGGCAGCGACGGCGGGGGCGACGCTCCATGGATTTGGACTCATCGTGTGCATGAGTTACTTAAGTACCAATTTTAGGAAGTTAGTAGTATGATTACAATATTGGACAAAGATATTTGACATCGATATGTATATGATTCCGCTGCATTTCTGATTAATTACCAGCATTCACCTGTT] [+] EMBL AK060529 [GGAAAGGAGATACAGTTCTCAGATAGTTTCTGCTACCTTTGCTGCCGCGCGCTGCAGAAGATCGGCGAGATGGATGCTGTGTTGGTTACCGCCGCCATCTTCGGGTTGCTGCTCTGCGGCTGCTCGGTTTCAGGAGTGGAAGGTATCGGTGTGAACTATGGCATGATCGGCAACAACCTCCCGTCGCCGGACAAGGTCATCGCCCTGTACAGAGCCAGCAACATCACCGACATCCGCCTCTTCCACCCGGACACCACCGTGCTCGCCGCGCTCCGCGGCTCGGGCCTCGGCGTCGTGCTCGGCACGCTCAACGAGGACCTGGCACGCCTCGCCACCGACGCCTCGTTCGCGGCGTCGTGGGTCCAGTCGTACGTGCAGCCCTTCGCCGGCGCCGTCCGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCTGGGGACGAGGCGGCGAGCGTCCTCCCGGCCATGAGGAACCTCCAGTCGGCGCTGCGCGCCGCGGGGCTCGGCGTGCCGGTCACGACGGTCGTCGCGACGTCGGTGCTGGGCTCCTCGTACCCGCCGTCGCAGGGCGCGTTCTCCGAGGCCGCGCTGCCGACGGTGGCGCCGATCGTCTCCTTCCTGGCGTCGAGCGGGACGCCCCTGCTGGTGAACGTGTACCCGTACTTCGCCTACTCCGCCGACCCGTCGTCGGTGCGGCTCGACTACGCGCTGCTGTCGCCGTCGACGTCGGCGGCCGTGACGGACGGCGGTGTCACGTACACCAACATGTTCGACGCCATCCTGGACGCGGTGTACGCGGCGCTGGAGAAGGCGGGCGGGCAGGGCCTGGAGGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGGCGGCGGCGGGGCCGGCGCCAGCGTGGAGAACGCGGCGGCGTACAGCAACAACCTGGTGCGCCACGTCGGGCGCGGCACGCCGCGGCGGCCCGGGAAGGCCGTGGAGACGTACATCTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGAACTTCGGCCTGTTCCACCCGGACATGAGCGCGGTCTACCACGTCGACTTCTCGGCGTGATCATCTTAATCAGGCAGCGACGGCGGGGGCGACGCTCCATGGATTTGGACTCATCGTGTGCATGAGTTACTTAAGTACCAATTTTAGGAAGTTAGTAGTATGATTACAATATTGGACAAAGATATTTGACATCGATATGTATATGATTCCGCTGCATTTCTGATTAATTACCAGCATTCACCTGTT] [+] EMBL AK099192 [ GAAAGGAGATACAGTTCTCAGATAGTTTCTGCTACCTTTGCTGCCGCGCGCTGCAGAAGATCGGCGAGATGGATGCTGTGTTGGTTACCGCCGCCATCTTCGGGTTGCTGCTCTGCGGCTGCTCGGTTTCAGGAGTGGAAGGTATCGGTGTGAACTATGGCATGATCGGCAACAACCTCCCGTCGCCGGACAAGGTCATCGCCCTGTACAGAGCCAGCAACATCACCGACATCCGCCTCTTCCACCCGGACACCACCGTGCTCGCCGCGCTCCGCGGCTCGGGCCTCGGCGTCGTGCTCGGCACGCTCAACGAGGACCTGGCACGCCTCGCCACCGACGCCTCGTTCGCGGCGTCGTGGGTCCAGTCGTACGTGCAGCCCTTCGCCGGCGCCGTCCGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCTGGGGACGAGGCGGCGAGCGTCCTCCCGGCCATGAGGAACCTCCAGTCGGCGCTGCGCGCCGCGGGGCTCGGCGTGCCGGTCACGACGGTCGTCGCGACGTCGGTGCTGGGCTCCTCGTACCCGCCGTCGCAGGGCGCGTTCTCCGAGGCCGCGCTGCCGACGGTGGCGCCGATCGTCTCCTTCCTGGCGTCGAGCGGGACGCCCCTGCTGGTGAACGTGTACCCGTACTTCGCCTACTCCGCCGACCCGTCGTCGGTGCGGCTCGACTACGCGCTGCTGTCGCCGTCGACGTCGGCGGCCGTGACGGACGGCGGTGTCACGTACACCAACATGTTCGACGCCATCCTGGACGCGGTGTACGCGGCGCTGGAGAAGGCGGGCGGGCAGGGCCTGGAGGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGGCGGCGGCGGGGCCGGCGCCAGCGTGGAGAACGCGGCGGCGTACAGCAACAACCTGGTGCGCCACGTCGGGCGCGGCACGCCGCGGCGGCCCGGGAAGGCCGTGGAGACGTACATCTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGAACTTCGGCCTGTTCCACCCGGACATGAGCGCGGTCTACCACGTCGACTTCTCGGCGTGATCATCTTAATCAGGCAGCGACGGCGGGGGCGACGCTCCATGGATTTGGACTCATCGTGTGCATGAGTTACTTAAGTACCAATTTTAGGAAGTTAGTAGTATGATTACAATATTGGACAAAGATATTTGACATCGATATGTATATGATTCCGCTGCATTTCTGATTAATTACCAGCATTCACC ] consensusID : consensus_15346#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF312474 [CGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15346#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence [AGCTCGTGCCGAATTCGGCACGAGATTTTATTATATGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGT] [+] EMBL BE228362 [AGCTCGTGCCGAATTCGGCACGAGATTTTATTATATGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGTTCATTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15346#0 CGCGCGCGCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGA 60 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 ------------------------------------------------------------ consensus_15346#0 GAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGT 120 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 --------------------------------GGAAAGGAGATACAGTTCTCAGATAGTT 28 consensus_15346#0 ATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCG 180 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 TCTGCTACCTTTGCTGCCGCGCGCTGCAGAAGATCGGCGAGATGGATGCTGTGTTGGTTA 88 consensus_15346#0 GGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACG 240 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 CCGCCGCCATCTTCGGGTTGCTGCTCTGCGGCTGCTCGGTTTCAGGAGTGGAAGGTATCG 148 consensus_15346#0 GCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGA 300 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 GTGTGAACTATGGCATGATCGGCAACAACCTCCCGTCGCCGGACAAGGTCATCGCCCTGT 208 consensus_15346#0 ACATCAACTACGTCCGCCTCTTCCACCCGGACACCGCCGTCCTCGCCGCGCTCCGCAACT 360 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 ACAGAGCCAGCAACATCACCGACATCCGCCTCTTCCACCCGGACACCACCGTGCTCGCCG 268 consensus_15346#0 CCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACC 420 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 CGCTCCGCGGCTCGGGCCTCGGCGTCGTGCTCGGCACGCTCAACGAGGACCTGGCACGCC 328 consensus_15346#0 CCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCT 480 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 TCGCCACCGACGCCTCGTTCGCGGCGTCGTGGGTCCAGTCGTACGTGCAGCCCTTCGCCG 388 consensus_15346#0 TCCGCTACATCAACGCCGGCAACGAGGTCATCCCCGGCGACCCCGCCGCCAACGTCCTCC 540 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 GCGCCGTCCGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCTGGGGACGAGGCGG 448 consensus_15346#0 CGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCA 600 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 CGAGCGTCCTCCCGGCCATGAGGAACCTCCAGTCGGCGCTGCGCGCCGCGGGGCTCGGCG 508 consensus_15346#0 CCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTACCCGCCGTCGCAGGGCGCGTTCT 660 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 TGCCGGTCACGACGGTCGTCGCGACGTCGGTGCTGGGCTCCTCGTACCCGCCGTCGCAGG 568 consensus_15346#0 CGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGC 720 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 GCGCGTTCTCCGAGGCCGCGCTGCCGACGGTGGCGCCGATCGTCTCCTTCCTGGCGTCGA 628 consensus_15346#0 CGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGGAGCGCGTGCAGC 780 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 GCGGGACGCCCCTGCTGGTGAACGTGTACCCGTACTTCGCCTACTCCGCCGACCCGTCGT 688 consensus_15346#0 TCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACAT 840 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 CGGTGCGGCTCGACTACGCGCTGCTGTCGCCGTCGACGTCGGCGGCCGTGACGGACGGCG 748 consensus_15346#0 ACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGGCGGTGGAGAAGGCGACGG 900 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 GTGTCACGTACACCAACATGTTCGACGCCATCCTGGACGCGGTGTACGCGGCGCTGGAGA 808 consensus_15346#0 GCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCG 960 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 AGGCGGGCGGGCAGGGCCTGGAGGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGGCGGCG 868 consensus_15346#0 TGGGCGCCACCGTGGAGAACGCGGCGGCGTACAACAACAACCTGATCCGCCACGTCTCCG 1020 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ------------------------------------------------------------ consensus_15346#1 GCGGGGCCGGCGCCAGCGTGGAGAACGCGGCGGCGTACAGCAACAACCTGGTGCGCCACG 928 consensus_15346#0 GCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGT 1080 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 ----------------------------------------------------CGCCATGT 8 consensus_15346#1 TCGGGCGCGGCACGCCGCGGCGGCCCGGGAAGGCCGTGGAGACGTACATCTTCGCCATGT 988 consensus_15346#0 TCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACA 1140 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 TCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACA 68 consensus_15346#1 TCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGAACTTCGGCCTGTTCCACCCGGACA 1048 consensus_15346#0 TGACCGAAGTCTACCATGTCGACTTCGCGGCCT--CCAGCTAGATTAGGCC----CGGCC 1194 consensus_15346#3 ------------------------------------------------------------ consensus_15346#2 TGACCGAAGTCTACCATGTCGACTTCGCGGCCT--CCAGCTAGATTAGGCC----CGGCC 122 consensus_15346#1 TGAGCGCGGTCTACCACGTCGACTTCTCGGCGTGATCATCTTAATCAGGCAGCGACGGCG 1108 consensus_15346#0 CATTTCACATTTCTTTCTTTCAGCTGC----TGC-TACTATTTTATTATTTGTCGGATAC 1249 consensus_15346#3 -----------AGCTCGTGCCGAATTC----GGCACGAGATTTTATTATATGTCGGATAC 45 consensus_15346#2 CATTTCACATTTCTTTCTTTCAGCTGC----TGC-TACTATTTTATTATTTGTCGGATAC 177 consensus_15346#1 GGGGCGACGCTCCATGGATTTGGACTCATCGTGTGCATGAGTTACTTAAGTACCAATTTT 1168 * * * * ** *** * * * consensus_15346#0 AGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGT 1309 consensus_15346#3 AGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTGCTCTGATTTGGATTCATTGT 105 consensus_15346#2 AGTATTTTCGTAGTTTCGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237 consensus_15346#1 AGGAAGTTAGTAGTAT-GATTACAATATTGGACAAAGATATTTGACATCGATATGTATAT 1227 ** * ** ***** * * ** * * consensus_15346#0 TCATTTGTTGTCGATGCACATTGGAGTATGATTTATTCAAACGCACGAATTTTACGAAAA 1369 consensus_15346#3 TCATTTGT---------------------------------------------------- 113 consensus_15346#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 269 consensus_15346#1 GATTCCGCTGCATTTCTGATTAATTACCAGCATTCACCTGTT------------------ 1269 consensus_15346#0 AAAAAAAAAAAAAAAAAAAAAAAAAA 1395 consensus_15346#3 -------------------------- consensus_15346#2 -------------------------- consensus_15346#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||