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Oryza sativa
cluster # 15347 cluster # 15347       Sequences # 21       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15347#0 length = 754 sequences # 16  
consensus_15347#1 length = 580 sequences # 2  
consensus_15347#2 length = 481 sequences # 1  
consensus_15347#3 length = 333 sequences # 1  
consensus_15347#4 length = 186 sequences # 1  

consensusID : consensus_15347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 754
fasta sequence
                              [ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT-GCCTC-GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC-CA-CGGTTTCGATTGAGACA-ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA-GAGGGCGAAGATGAAGCTGG-CCAAGAAGCTGAGGCA--GCG-GCGCAGGAGGCTTGTCCA-GAAGAGGCGG-CTGA-GGAAGAAA-GGTAGAT-GGCCACCATCCA-AGATGAAGAAGCTCAAGAACGTCTAACCAGCA-GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC-TGTTCATCCGTCTCTGTATTTCCTAAGC-TGATGCCCA-GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC-CCGATGAAAA--TTCAT-CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACAAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA]

[+] EMBL CF337909             [ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCCGTCCAT GCCTC GGCAGAGGCTGGCGCATAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA TGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGG                                                                                                                                                                                                                                 ]
[+] EMBL CF298199             [                                    gtgGATAGGCTGACGACGGGCCAAGAAGCCGAATTCCACACTGCCCGTGGCCATGGCGCTGTTTCTATACCCGACCGTCTCCTTCCTAGCCTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK120429             [                                                  GACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTC                                                                                                     ]
[+] EMBL AU082115             [                                                          AAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGT CA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTG TCTTCTGTACACCTCTATGGTC TG TCATCC                                                                                                                                                                                          ]
[+] EMBL BE229353             [                                                           cGAGGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTHCTCCGGCTMCCCGGCTCGCGCCAGAGCTCTCCCCGCCTCCGMCAATGTCGCCTCCACCATCCCCGGCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGA GCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAVACA ATGCCGTTCGAAACTAAGMAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGMA  SCG CCGSAGGAGGCTTSTCCA GAAGAGGSSG CTGA GGAAGAAA GGTAGAT GSCCACCATCCM AGATGAAGAAGCTCAAGACCGTCT                                                                                                                                                                                                                                                    ]
[+] EMBL CB683033             [                                                                   AATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTAT                                                                                                        ]
[+] EMBL AU082116             [                                                                                                                         CTCGCCTCNTCNTCGGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAAa                                                                                                                ]
[-] EMBL CF335072             [                                                                                                                                                                            GCCAATGTCGCCTCCACCGTCCCCGCCCCAAGGTTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CACCGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGGAGAAA GGTAGAT GGCCCCCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATAAAACCCAATGTTTGCAAAAaaaa                                                                                                             ]
[-] EMBL BI305425             [                                                                                                                                                                                         CCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTCTCGATTGAGACA ATGCCGCTCTAAACTAAGCAGAAGATGATCATGGAGCA GAGGGTGAAGATGAAGCTGG CCAAGAAGCTAAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCCATTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGCATGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAGTGTTTGCAAAATGTGATTATTTCTTTCGCCGATGAAAATTTTCATACTTGTATTTTTTAG                                                                ]
[-] EMBL BI306644             [                                                                                                                                                                                          CACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTCTCGATTGAGACA ATGCCGCTCTAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCCATTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGA TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAGTGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT  TTCAT CTTGTATTTTTTAG                                                                ]
[+] EMBL CB000050             [                                                                                                                                                                                                         AAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT  TTCAT CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACAAAAAAAAA                         ]
[-] EMBL CF337910             [                                                                                                                                                                                                                  GTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCCGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCNCA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGAAAAAAAaaaa                                                                                  ]
[+] EMBL BM037795             [                                                                                                                                                                                                                                                                       GGCTAGTTTCTGTCCATAGCCTCAGGCAGA GCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCC  AACC CA CGGTTTCGATTGAGACACATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCACGAGGGCGAAGATGAAGCTGG CCCAGAAGCTGAGGCA  GCG GCGCAGGAGGCTTGTCCACGAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCNCCATCCACAGATGAAGAAGCTCAAGAACGTCTAACC CCANGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCACGCGAATTTTGCTGTTC AAATATGAAACAC ATGTTT C AAATGTGATTATTTCTTTC CCGATGAAAAaaaaaa                                                                                ]
[+] EMBL AU082128             [                                                                                                                                                                                                                                                                                                                                                                                                                      GCAAAGATGAAGCTGGCCCAAGAAGCTGAGGCATNGCGNCCTCAGGAGGCTTGTCCA GAAGAGGCGGCCTGANGGAAGAAACGGTAGATCGGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAAaaaaa                                                                                 ]
[+] EMBL BI796901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGCGG CTGA GGAAGAAA GGTAGAT GGCCCCCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTC CCGTTCTTCTGTACACCTCTATGTTCATGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACAC ATGTTTGC AAATGTGATTATTTCTTTC CCGATGAAAAaaaaaa                                                                                ]
[+] EMBL AU082127             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT  TTCAT CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACACACAAAGCCCAGTACTGAAAAAAAAAAAAAAAA]


>consensus_15347#0 ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAA GAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGC TGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCC CAGCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTT CCCGATGAAAATTCATCTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAAC AAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA



consensusID : consensus_15347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence
                              [ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA]

[+] EMBL CF196559             [ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA]
[+] EMBL OSC9721              [                                                                                                                                                                                                                                                                                 CGGTTTCGATTGANACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCNGTAC                                                                                               ]


>consensus_15347#1 ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCT CCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCA CCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTT CTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAG CTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCG AAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGA GGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCAC CATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTC TGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAAT TTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA



consensusID : consensus_15347#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence
                              [GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCGGTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG]

[-] EMBL AA753185             [GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCGGTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG]


>consensus_15347#2 GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCT GGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAG ACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTG GCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAA GGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCG GTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAA AAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCT G



consensusID : consensus_15347#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA]

[-] EMBL CF298198             [AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA]


>consensus_15347#3 AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAA AGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCA GGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGA AGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCA TGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGA AATATGAAACACAATGTTTGCAAAAAAAAAAAA



consensusID : consensus_15347#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence
                              [TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATAGAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACTACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAGTAGCAG]

[+] EMBL AA749800             [TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATAGAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACTACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAGTAGCAG]


>consensus_15347#4 TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATA GAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACT ACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAG TAGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15347#0      ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAA 60
consensus_15347#1      ------------------------------------------------------------
consensus_15347#3      ------------------------------------------------------------
consensus_15347#2      ------------------------------------------------------------
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      GAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT 120
consensus_15347#1      --------ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT 52
consensus_15347#3      ------------------------------------------------------------
consensus_15347#2      ------------------------------------------------------------
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT 180
consensus_15347#1      CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT 112
consensus_15347#3      ------------------------------------------------------------
consensus_15347#2      ------------------------------------------------------------
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT 240
consensus_15347#1      CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT 172
consensus_15347#3      ------------------------------------------------------------
consensus_15347#2      -----------------------------------------------------GCCCTNT 7
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC 300
consensus_15347#1      GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC 232
consensus_15347#3      ------------------------------------------------------------
consensus_15347#2      GGANGGTTNTTTCACCAAGAAGGGGTAG--TTCTGTCCATGCCTCGGCAGAGGCTGGCGC 65
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT 360
consensus_15347#1      AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT 292
consensus_15347#3      --------------------AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAAT 40
consensus_15347#2      AGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAAT 125
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 420
consensus_15347#1      GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 352
consensus_15347#3      CCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAA 100
consensus_15347#2      GCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 185
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 480
consensus_15347#1      GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 412
consensus_15347#3      GAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAG 160
consensus_15347#2      GAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 245
consensus_15347#4      ----------------TTTAACACAAATATC-GCTGGCATCAGCTTAGGAATTACAG-AG 42
                                          *  *    * **         * *** ** **  *  * **

consensus_15347#0      ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCG--GTC 538
consensus_15347#1      ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCG--GTC 470
consensus_15347#3      ATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCG--GTC 218
consensus_15347#2      ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCG--GTC 303
consensus_15347#4      ACGGATGA-ACAGAACATAGAGGTGTAC-AGAGCGCGACGACATCACTGCTGTAGACGTC 100
                       * **     *   ** **  **  *  * *** **      ** **  * *** *  ***

consensus_15347#0      GCTGTTC--TTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 596
consensus_15347#1      GCTGTTC--TTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 528
consensus_15347#3      GGTGTTT--TTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAA 276
consensus_15347#2      GCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 363
consensus_15347#4      TGAGCTTACTGATGTGCAC-----TACTCTGACTAGCGCTGACTG-ACGCTCTGCGCTGC 154
                          * *   *   ** * *        ** *   * *  *   ** *     *  * *  

consensus_15347#0      TGCCCAGCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTT 656
consensus_15347#1      TGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA-------- 580
consensus_15347#3      TGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA--- 333
consensus_15347#2      TGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAA 423
consensus_15347#4      TAGTTGCAGTATGCTGCAGATCGTAGTAGCAG---------------------------- 186
                       *       * **  **  * **     *  *                             

consensus_15347#0      CTTTCCCGATGAAAATTCATCTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAA 716
consensus_15347#1      ------------------------------------------------------------
consensus_15347#3      ------------------------------------------------------------
consensus_15347#2      AAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG-- 481
consensus_15347#4      ------------------------------------------------------------
                                                                                   

consensus_15347#0      AAACAAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA 754
consensus_15347#1      --------------------------------------
consensus_15347#3      --------------------------------------
consensus_15347#2      --------------------------------------
consensus_15347#4      --------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)