These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 754 fasta sequence [ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT-GCCTC-GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC-CA-CGGTTTCGATTGAGACA-ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA-GAGGGCGAAGATGAAGCTGG-CCAAGAAGCTGAGGCA--GCG-GCGCAGGAGGCTTGTCCA-GAAGAGGCGG-CTGA-GGAAGAAA-GGTAGAT-GGCCACCATCCA-AGATGAAGAAGCTCAAGAACGTCTAACCAGCA-GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC-TGTTCATCCGTCTCTGTATTTCCTAAGC-TGATGCCCA-GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC-CCGATGAAAA--TTCAT-CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACAAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA] [+] EMBL CF337909 [ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCCGTCCAT GCCTC GGCAGAGGCTGGCGCATAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA TGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGG ] [+] EMBL CF298199 [ gtgGATAGGCTGACGACGGGCCAAGAAGCCGAATTCCACACTGCCCGTGGCCATGGCGCTGTTTCTATACCCGACCGTCTCCTTCCTAGCCTCCT ] [+] EMBL AK120429 [ GACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTC ] [+] EMBL AU082115 [ AAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGT CA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTG TCTTCTGTACACCTCTATGGTC TG TCATCC ] [+] EMBL BE229353 [ cGAGGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTHCTCCGGCTMCCCGGCTCGCGCCAGAGCTCTCCCCGCCTCCGMCAATGTCGCCTCCACCATCCCCGGCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGA GCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAVACA ATGCCGTTCGAAACTAAGMAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGMA SCG CCGSAGGAGGCTTSTCCA GAAGAGGSSG CTGA GGAAGAAA GGTAGAT GSCCACCATCCM AGATGAAGAAGCTCAAGACCGTCT ] [+] EMBL CB683033 [ AATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTAT ] [+] EMBL AU082116 [ CTCGCCTCNTCNTCGGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAAa ] [-] EMBL CF335072 [ GCCAATGTCGCCTCCACCGTCCCCGCCCCAAGGTTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CACCGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGGAGAAA GGTAGAT GGCCCCCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATAAAACCCAATGTTTGCAAAAaaaa ] [-] EMBL BI305425 [ CCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTCTCGATTGAGACA ATGCCGCTCTAAACTAAGCAGAAGATGATCATGGAGCA GAGGGTGAAGATGAAGCTGG CCAAGAAGCTAAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCCATTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGCATGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAGTGTTTGCAAAATGTGATTATTTCTTTCGCCGATGAAAATTTTCATACTTGTATTTTTTAG ] [-] EMBL BI306644 [ CACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTCTCGATTGAGACA ATGCCGCTCTAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCCATTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGA TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAGTGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT TTCAT CTTGTATTTTTTAG ] [+] EMBL CB000050 [ AAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT TTCAT CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACAAAAAAAAA ] [-] EMBL CF337910 [ GTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCCGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCNCA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGAAAAAAAaaaa ] [+] EMBL BM037795 [ GGCTAGTTTCTGTCCATAGCCTCAGGCAGA GCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCC AACC CA CGGTTTCGATTGAGACACATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCACGAGGGCGAAGATGAAGCTGG CCCAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCACGAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCNCCATCCACAGATGAAGAAGCTCAAGAACGTCTAACC CCANGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCACGCGAATTTTGCTGTTC AAATATGAAACAC ATGTTT C AAATGTGATTATTTCTTTC CCGATGAAAAaaaaaa ] [+] EMBL AU082128 [ GCAAAGATGAAGCTGGCCCAAGAAGCTGAGGCATNGCGNCCTCAGGAGGCTTGTCCA GAAGAGGCGGCCTGANGGAAGAAACGGTAGATCGGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAAaaaaa ] [+] EMBL BI796901 [ AGGCGG CTGA GGAAGAAA GGTAGAT GGCCCCCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTC CCGTTCTTCTGTACACCTCTATGTTCATGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACAC ATGTTTGC AAATGTGATTATTTCTTTC CCGATGAAAAaaaaaa ] [+] EMBL AU082127 [ CGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT TTCAT CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACACACAAAGCCCAGTACTGAAAAAAAAAAAAAAAA] consensusID : consensus_15347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA] [+] EMBL CF196559 [ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA] [+] EMBL OSC9721 [ CGGTTTCGATTGANACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCNGTAC ] consensusID : consensus_15347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCGGTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG] [-] EMBL AA753185 [GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCGGTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG] consensusID : consensus_15347#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA] [-] EMBL CF298198 [AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA] consensusID : consensus_15347#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATAGAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACTACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAGTAGCAG] [+] EMBL AA749800 [TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATAGAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACTACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAGTAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15347#0 ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAA 60 consensus_15347#1 ------------------------------------------------------------ consensus_15347#3 ------------------------------------------------------------ consensus_15347#2 ------------------------------------------------------------ consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 GAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT 120 consensus_15347#1 --------ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT 52 consensus_15347#3 ------------------------------------------------------------ consensus_15347#2 ------------------------------------------------------------ consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT 180 consensus_15347#1 CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT 112 consensus_15347#3 ------------------------------------------------------------ consensus_15347#2 ------------------------------------------------------------ consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT 240 consensus_15347#1 CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT 172 consensus_15347#3 ------------------------------------------------------------ consensus_15347#2 -----------------------------------------------------GCCCTNT 7 consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC 300 consensus_15347#1 GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC 232 consensus_15347#3 ------------------------------------------------------------ consensus_15347#2 GGANGGTTNTTTCACCAAGAAGGGGTAG--TTCTGTCCATGCCTCGGCAGAGGCTGGCGC 65 consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT 360 consensus_15347#1 AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT 292 consensus_15347#3 --------------------AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAAT 40 consensus_15347#2 AGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAAT 125 consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 420 consensus_15347#1 GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 352 consensus_15347#3 CCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAA 100 consensus_15347#2 GCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 185 consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 480 consensus_15347#1 GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 412 consensus_15347#3 GAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAG 160 consensus_15347#2 GAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 245 consensus_15347#4 ----------------TTTAACACAAATATC-GCTGGCATCAGCTTAGGAATTACAG-AG 42 * * * ** * *** ** ** * * ** consensus_15347#0 ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCG--GTC 538 consensus_15347#1 ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCG--GTC 470 consensus_15347#3 ATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCG--GTC 218 consensus_15347#2 ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCG--GTC 303 consensus_15347#4 ACGGATGA-ACAGAACATAGAGGTGTAC-AGAGCGCGACGACATCACTGCTGTAGACGTC 100 * ** * ** ** ** * * *** ** ** ** * *** * *** consensus_15347#0 GCTGTTC--TTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 596 consensus_15347#1 GCTGTTC--TTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 528 consensus_15347#3 GGTGTTT--TTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAA 276 consensus_15347#2 GCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 363 consensus_15347#4 TGAGCTTACTGATGTGCAC-----TACTCTGACTAGCGCTGACTG-ACGCTCTGCGCTGC 154 * * * ** * * ** * * * * ** * * * * consensus_15347#0 TGCCCAGCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTT 656 consensus_15347#1 TGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA-------- 580 consensus_15347#3 TGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA--- 333 consensus_15347#2 TGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAA 423 consensus_15347#4 TAGTTGCAGTATGCTGCAGATCGTAGTAGCAG---------------------------- 186 * * ** ** * ** * * consensus_15347#0 CTTTCCCGATGAAAATTCATCTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAA 716 consensus_15347#1 ------------------------------------------------------------ consensus_15347#3 ------------------------------------------------------------ consensus_15347#2 AAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG-- 481 consensus_15347#4 ------------------------------------------------------------ consensus_15347#0 AAACAAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA 754 consensus_15347#1 -------------------------------------- consensus_15347#3 -------------------------------------- consensus_15347#2 -------------------------------------- consensus_15347#4 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||