These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1666 fasta sequence [CGAGCACTCCGCCGCCGCCGCCGCCGCCGCCTCGACGCATCCGCTTCCCCCCACGCGAGCCGAAGCTTCTAGAACCTTCGAGGCCGCGGCTCCCACGGGCGGCAATGCAGAGCGCGGCGGCCGTCGGGCTCCTCCGGCCATGCGGCGCCACCACCGCCGCCGCCCCGCTCCAGCTCCGCAACCCTAGCCCCCGGGGCTTCGGCGTCGGAGTCGGGCAGCCGCTGCTCCCGCCGAGGGGGCTCCGCCTCTCCGCCGTGGCCCCGCGCGCGGGCATCTCCGCCCGGCGCATCGGGCTCGTGCCGGCCTCCCCGGAGCAGGAGGATGAGCGGCGGCGGGGCGCACGCGACGTGGCCGTGGCGGCGACAGCGGCGGCGGCGGGTGAGGCAGGGGCGGAGGAGGGTGGAGGGCTCGCGAAGACGCTGCAGCTCGGCGCGCTCTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTTTTGAAGGTTTTTCCATACCCCATAAACATCACAAATGTCCAGTTTGCTGTCGGCACTGTCATTGCTCTGTTCATGTGGATTACCGGTATCCTTAAAAGA-CCAAAGATCTCCGGTGCGCAGCTTGCTGCTA-TCC-TTCCTCTCGCTATGGTCCACACCATGGGCAATCTTTTCACGAACATGAGCCTTGGAAAGGTTGCAGTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTT-TCAGTTCTGCTTTCAGCAC-TTTTCCTCGGAGAGATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATTTTGGAGTGCAATGGCCTCAAATGTCACCTTCCAGTCAAGGAATGTGTTGAGCAAGAAGCTTATGGTGAAGAAGGAGGAATCTCTGGACAACATTACCCTCTTCTCAATCATTACAGTGATGTCATTCTTCCTCTTGGCCCCAGTAACCTTGCTAACAGAGGGTGTCAAAGTCACTCC-GACAGTTCTGCAGTCT-GCTGGTCTGAAC-TT-AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT-GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA-GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGTGCAATATAACGTTATATTATCTCTGTTTCTTTATGGAAGTATTACTATCCTTGTATTATAAATTAAAAAGTAAATTTCATAAAACTATAGATATCTTGATCAAA] [+] EMBL AK071036 [CGAGCACTCCGCCGCCGCCGCCGCCGCCGCCTCGACGCATCCGCTTCCCCCCACGCGAGCCGAAGCTTCTAGAACCTTCGAGGCCGCGGCTCCCACGGGCGGCAATGCAGAGCGCGGCGGCCGTCGGGCTCCTCCGGCCATGCGGCGCCACCACCGCCGCCGCCCCGCTCCAGCTCCGCAACCCTAGCCCCCGGGGCTTCGGCGTCGGAGTCGGGCAGCCGCTGCTCCCGCCGAGGGGGCTCCGCCTCTCCGCCGTGGCCCCGCGCGCGGGCATCTCCGCCCGGCGCATCGGGCTCGTGCCGGCCTCCCCGGAGCAGGAGGATGAGCGGCGGCGGGGCGCACGCGACGTGGCCGTGGCGGCGACAGCGGCGGCGGCGGGTGAGGCAGGGGCGGAGGAGGGTGGAGGGCTCGCGAAGACGCTGCAGCTCGGCGCGCTCTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTTTTGAAGGTTTTTCCATACCCCATAAACATCACAAATGTCCAGTTTGCTGTCGGCACTGTCATTGCTCTGTTCATGTGGATTACCGGTATCCTTAAAAGA CCAAAGATCTCCGGTGCGCAGCTTGCTGCTA TCC TTCCTCTCGCTATGGTCCACACCATGGGCAATCTTTTCACGAACATGAGCCTTGGAAAGGTTGCAGTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTT TCAGTTCTGCTTTCAGCAC TTTTCCTCGGAGAGATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATTTTGGAGTGCAATGGCCTCAAATGTCACCTTCCAGTCAAGGAATGTGTTGAGCAAGAAGCTTATGGTGAAGAAGGAGGAATCTCTGGACAACATTACCCTCTTCTCAATCATTACAGTGATGTCATTCTTCCTCTTGGCCCCAGTAACCTTGCTAACAGAGGGTGTCAAAGTCACTCC GACAGTTCTGCAGTCT GCTGGTCTGAAC TT AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGTGCAATATAACGTTATATTATCTCTGTTTCTTTATGGAAGTATTACTATCCTTGTATTATAAATTAAAAAGTAAATTTCATAAAACTATAGA ] [+] EMBL AF372833 [ TCTAGAACCTTCGAGGCCGCGGCTCCCACGGGCGGCAATGCAGAGCGCGGCGGCCGTCGGGCTCCTCCGGCCATGCGGCGCCACCACCGCCGCCGCCCCGCTCCAGCTCCGCAACCCTAGCCCCCGGGGCTTCGGCGTCGGAGTCGGGCAGCCGCTGCTCCCGCCGAGGGGGCTCCGCCTCTCCGCCGTGGCCCCGCGCGCGGGCATCTCCGCCCGGCGCATCGGGCTCGTGCCGGCCTCCCCGGAGCAGGAGGATGAGCGGCGGCGGGGCGCACGCGACGTGGCCGTGGCGGCGACAGCGGCGGCGGCGGGTGAGGCAGGGGCGGAGGAGGGTGGAGGGCTCGCGAAGACGCTGCAGCTCGGCGCGCTCTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTTTTGAAGGTTTTTCCATACCCCATAAACATCACAAATGTCCAGTTTGCTGTCGGCACTGTCATTGCTCTGTTCATGTGGATTACCGGTATCCTTAAAAGA CCAAAGATCTCCGGTGCGCAGCTTGCTGCTA TCC TTCCTCTCGCTATGGTCCACACCATGGGCAATCTTTTCACGAACATGAGCCTTGGAAAGGTTGCAGTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTT TCAGTTCTGCTTTCAGCAC TTTTCCTCGGAGAGATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATTTTGGAGTGCAATGGCCTCAAATGTCACCTTCCAGTCAAGGAATGTGTTGAGCAAGAAGCTTATGGTGAAGAAGGAGGAATCTCTGGACAACATTACCCTCTTCTCAATCATTACAGTGATGTCATTCTTCCTCTTGGCCCCAGTAACCTTGCTAACAGAGGGTGTCAAAGTCACTCC GACAGTTCTGCAGTCT GCTGGTCTGAAC TT AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGTGCAATATAACGTTATATTATCTCTGTTTCTTTATGGAAGTATTACTATCCTTGTATTATAAATTAAAAAGTAAA ] [+] EMBL C27135 [ cggganatGACGTNGCAGCTCGGCGCGCTCTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTTTTGAAGGTTTTTCCATACCCCATAAACATCACAAATGTCCAGTTTGCTGTCGGCACTGTCATTGCTCTGTTCATGTGGATTACCGGTATCCTTAAAAGA CCAAAGATCTCCGGTGCGCAGTTNGCT NTANTCC TTCCTCTCGCTATGGTCCACACCATGGGCAATCTTTTCACGAACATGAGCCTTGGAAAGGTTGCAGTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTT TCAGTTCTGCTTTCAG ACTTTTTCCTCGGAG NATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCC ATTG ] [+] EMBL C27141 [ TCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTTTTGAAGGTTTTTCCATACCCCATAAACATCACAAATGTCCAGTTTGCTGTCGGCACNGTCATTGCTCTGTTCATGTGGATTACCGGTATCCTTAAAAGACCCAAAGATCTCCGGTGCGCNG TGGC NTANTCCTTTCCTCTCGCTATGGTCCACACCATGGGCAATCTNTTCACGACCATGAGCCTTGGAAAGGTTGCAGTGTCATTTACACATACTATCAAGG TATGG GGCTTNCTTTNTCA ] [+] EMBL OSAA31804 [ AAGATCTCCGGTGCGCAGCTTGCTGCTA TCC TTCCTCTCGCTATGGTCCACACCATGGGCAATCTTTTCACGAACATGAGCCTTGGAAAGGTTGCAGTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTT TCAGTTCTGCTTTCAGCAC TTTTCCTCGGAGAGATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGT ] [+] EMBL CB000097 [ GAACATGAGCCTTGGAAAGGTTGCAGTGTCATTCCCTCATACTATCAAGGCTATGGAGCCTTTCTTT TCAGTTCTGCTTTCAGCAC TTTTCCTCGGAGAGATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATTTTGGAGTGCAATGGCCTCAAATGTCACCTTCCAGTCAAGGAATGTGTTGAGCAAGAAGCTTATGGTGAAGAAGGAGGAATCTCTGGACAACATTACCCTCTTCTCAATCATTACAGTGATGTCATTCTTCCTCTTGGCCCCAGTAACCTTGCTAACAGAGGGTGTCAAAGTCACTCC GACAGTTCTGCAGTCT GCTGGTCTGAAC TT AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCCAGACTGCCTGATTGTGTCT ] [+] EMBL BI806563 [ TCCTCTT GCCCCAGTACCCTTGCTAACAGAGGGTGTCCAAGTCACTCCGGACAGTTCT CAGTCT GCTGGTCTGAACTTT AAAACAGATATACACAAGGTCACTGATT CTGCGTTCTGTTTCCATGCATACC ACAGGTGGTCGTACATGATCCT GCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCAC ATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAACGCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGT C ATATAACGTTATATTAaaaaaaa ] [+] EMBL BI806491 [ gnTCACTCC GACAGTTCTGCAGTCTGGCTGGTCTGAAC TTAAAAACAGATATACACAA GTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGTGCAATATAACGTTATATTATCTCaaaaaaa ] [+] EMBL CB000136 [ TCC GACAGTTCTGCAGTCT GCTGGTCTGAAC TT AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACGATTGAAGCGGCTTAAACTTTTTTCCAAGACT ] [+] EMBL CF303670 [ ACAGTTCTGCAGTCT GCTGGTCTGAAC TT AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGTGCAATATAACGTTATATTATCTCTGTTTCTTTATGGAAGTATTACTATCCTTGTATTATAAATTAAAAAGTAAATTTCATAAAACTATAGATATCTTGATCAAA] [+] EMBL CF303129 [ GAAC TT AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAGGT GTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTTATTGTTTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTGTTCTTTCTTACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGCGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATA ] [+] EMBL D42782 [ CGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGAACCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCG ] [+] EMBL AU100795 [ GAAGANCCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAA GCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTCGTGCAATATAAaaa ] consensusID : consensus_15355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1581 fasta sequence [TCCCCCTCGACCTCCCCGCCGCGCCACCACCTCCTCCTCCTCCAAGCTCTCCACCCCACGCACTCCGGAAGCTTCTAGAACCTCCGGCCTCCCCTTCCCCCGGGGGAACCTTCTCGCCTCCCGCCGCCATGCAGAGCGCCGCGGCGGCGTTCGGCCTCGTCCGGCCGTGCCCCGCGCGGCCGCCGCTCCAGCTGGGCCCCGGCAGCAGTAGCTGTCGTCCCATCCTGCTCCATGCCCGGCCCCTCGCCGCCGGCATCGCCTCCTCTTCGCGAGGGCCCGCCGCCGTGGCGGCGCGGTCGCTTGGGCGGCTGCTGCTGCTGCCGCCGCCGCCGCCGATCTCGCCGGACCGGGCGGGGA-GGGGGAGGGCGCGCCACGTGGCGTGCGGCGCGGCGGCCGGGGACGCCAAGGCGGAGGAGGAGGAAAGCGGCCTCGCCAAGACGCTGCAGCTCAGCGCGCTGTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTCCTGAAGGTTTTCCCATATCCAATAAACATTACAACAGTTCAATTTGCTGTTGGTACTGTCGTTGCTTTGTTCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGCTCTTTGCCATCCTTCCTCTAGCTGTGGACCATACTATGGGCAATCTTTTCACTAACATGAGCCTGGGGAAGGTTGCTGTGTCATTCACACATACCATCAAAGCTATGGAACCTTTCTTTTCTGTTCTCCTCTCTGCAATTTTCCTTGGCGAGTTGCCTACAGTTTGGGTGATACTTTCACTTCTTCCGATTGTTGGTGGTGTAGCATTTGGCATCTCTTACTGAGGCTTCCTTCAACTGGGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAATGTGCTGAGCAAGAAACTCATGGTTAAAAAGGAGGAATCTCTTGACAACATTAATCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCACTTGCCGGAGTTTT-CCTGTACTCACAACTGAAGAGACTGAAGCCCAAGCCCAAGGCTGCGTAACTGAAGCATGC-AGTTGCCATCTTATTGTAGCAGTCTTTCCAAGATGAATTGTCGTAGCACAC-GTTTGGAAATTTATAGTGCATTTAGTGTAGAGGGAAGCTGAACATGTTCACGTTGAAGCTAAGTGTAGTAGGATCATGTATGTGGTCTAACTCTTACAGTTAAAGCAGGGTTTTGAAGTACATGAGCAGATTTCCGTGCGTGTTGTTGCAATAAAGTTTCGGCTTC] [+] EMBL AK066618 [TCCCCCTCGACCTCCCCGCCGCGCCACCACCTCCTCCTCCTCCAAGCTCTCCACCCCACGCACTCCGGAAGCTTCTAGAACCTCCGGCCTCCCCTTCCCCCGGGGGAACCTTCTCGCCTCCCGCCGCCATGCAGAGCGCCGCGGCGGCGTTCGGCCTCGTCCGGCCGTGCCCCGCGCGGCCGCCGCTCCAGCTGGGCCCCGGCAGCAGTAGCTGTCGTCCCATCCTGCTCCATGCCCGGCCCCTCGCCGCCGGCATCGCCTCCTCTTCGCGAGGGCCCGCCGCCGTGGCGGCGCGGTCGCTTGGGCGGCTGCTGCTGCTGCCGCCGCCGCCGCCGATCTCGCCGGACCGGGCGGGGA GGGGGAGGGCGCGCCACGTGGCGTGCGGCGCGGCGGCCGGGGACGCCAAGGCGGAGGAGGAGGAAAGCGGCCTCGCCAAGACGCTGCAGCTCGGCGCGCTGTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTCCTGAAGGTTTTCCCATATCCAATAAACATTACAACAGTTCAATTTGCTGTTGGTACTGTCGTTGCTTTGTTCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGCTCTTTGCCATCCTTCCTCTAGCTGTGGTCCATACTATGGGCAATCTTTTCACTAACATGAGCCTGGGGAAGGTTGCTGTGTCATTCACACATACCATCAAAGCTATGGAACCTTTCTTTTCTGTTCTCCTCTCTGCAATTTTCCTTGGCGAGTTGCCTACAGTTTGGGTGATACTTTCACTTCTTCCGATTGTTGGTGGTGTAGCATTTGGCATCTCTTACTGAGGCTTCCTTCAACTGGGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAATGTGCTGAGCAAGAAACTCATGGTTAAAAAGGAGGAATCTCTTGACAACATTAATCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCACTTGCCGGAGTTTT CCTGTACTCACAACTGAAGAGACTGAAGCCCAAGCCCAAGGCTGCGTAACTGAAGCATGC AGTTGCCATCTTATTGTAGCAGTCTTTCCAAGATGAATTGTCGTAGCACAC GTTTGGAAATTTATAGTGCATTTAGTGTAGAGGGAAGCTGAACATGTTCACGTTGAAGCTAAGTGTAGTAGGATCATGTATGTGGTCTAACTCTTACAGTTAAAGCAGGGTTTTGAA ] [+] EMBL CB662577 [ TCCTCCAAGCTCTCCACCCCACGCACTCCGGAAGCTTCTAGAACCTCCGGCCTCCCCTTCCCCCGGGGGAACCTTCTCGCCTCCCGCCGCCATGCAGAGCGCCGCGGCGGCGTTCGGCCTCGTCCGGCCGTGCCCCGCGCGGCCGCCGCTCCAGCTGGGCCCCGGCAGCAGTAGCTGTCGTCCCATCCTGCTCCATGCCCGGCCCCTCGCCGCCGGCATCGCCTCCTCTTCGCGAGGGCCCGCCGCCGTGGCGGCGCGGTCGCTTGGGCGGCTGCTGCTGCTGCCGCCGCCGCCGCCGATCTCGCCGGACCGGGCGGGGAGGGGGGAGGGCGCGCCACGTGGCGTGCGGCGCGGCGGTCGGGGACGCCAAGGCGGAGGAGGAGGAAAGCGGCCTCGCCAAGACGCTGCAGCTCAGCGCGCTGTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTCCTGAAGGTTTTCCCATATCCAATAAATATTACAACAGTTCAATTTGCTGTTGGTACTGTCGTTGCTTTGTTCATGTGGATCACTGGTATCCTTACGAGACCAAAGATTTCTGGTGCACAGCTCTTTGCCATCCTTCCTCTAGCTGTGGACAATACTATGGGCAATCTTTTCACTAACATGAGCCTGGGGAATGTTGCTGTGTGATTCACACATACCATTTAAGCTATGGAACCTTTCTTTTCTGATCTCCTCTCTGCAATTTTACTTGGC ] [+] EMBL CB662578 [ TCCTCCAAGCTCTCCACCCCACGCACTCCGGAAGCTTCTAGAACCTCCGGCCTCCCCTTCCCCCGGGGGAACCTTCTCGCCTCCCGCCGCCATGCAGAGCGCCGCGGCGGCGTTCGGCCTCGTCCGGCCGTGCCCCGCGCGGCCGCCGCTCCAGCTGGGCCCCGGCAGCAGTAGCTGTCGTCCCATCCTGCTCCATGCCCGGCCCCTCGCCGCCGGCATCGCCTCCTCTTCGCGAGGGCCCGCCGCCGTGGCGGCGCGGTCGCTTGGGCGGCTGCTGCTGCTGCCGCCGCCGCCGCCGATCTCGCCGGACCGGGCGGGGA GGGGGAGGGCGCGCCACGTGGCGTGCGGCGCGGCGGCCGGGGACGCCAAGGCGGAGGAGGAGGAAAGCGGCCTCGCCAAGACGCTGCAGCTCAGCGCGCTGTTCGGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAAGTCCTGAAGGTTTTCCCATATCGAATAAACATTACAACAGCTCAATTTGCTGTTGGAAGTGTCATTGCTTTGCTCATGTGGATCACTGGTATCGTTAAGAGACCAAAGATGTCTGGAGCACAGCTCTTTGCCATCCTTCCTCGAGGTGTGGACC ] [+] EMBL BE230314 [ GATTGTTGGTGGTGTAGCA TTGGCATCTCTTACTGAGGCTTCCTTCAACTGGGCTGGGTTTTGGAGTGCAATGGCTTCAAATGTCACCTTCCAGTCAAGGAATGTGCTGAGCAAGAAACTCATGGTTAAAAAGGAGGAATCTCTTGACAACATTAATCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTG TCTTCAAGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGGCATCGCACTTGCCGGAG TTT CCTGT CTCACAACTGAAGAAACTGAA CCCAA CCCAAGGCTGCGTAACTGAAGCATGCAAGTTGCCATCTTATTGTAACAAGCTTTTCAAGATGAAATG CGTAGCACACGGTTGGGAAAATTATAagt ] [-] EMBL CB685008 [ TCTCAATCATAACTGGGAGGTCATTTTTCGTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCGAAATCGCTCCTACAGTTTTGCAATCTGCTGGTCGGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCGGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCACTTGCCGGAGTTTT CCTGTACTCACAACTGAAGAGACTGAAGCCCAAGCCCAAGGCTGCGTAACTGAAGCATGC AGTTGCCATCTTATTGTAGCAGTCTTTCCAAGATGAATTGTCGTAGCACAC GTTTGGAAATTTATAGTGCATTTAGTGTAGAGGGAAGCTGAACATGTTCACGTTGAAGCTAAGTGTAGTAGGATCATGTATGTGGTCTAACTCTTACAGTTAAAGCAGGGTTTTGAAGTACATGAGCAGATTTCCGTGCGTGAAGGGGCAATAAAGTTTCGGCTTC] [+] EMBL AK059591 [ CATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCACTTGCCGGAGTTTT CCTGTACTCACAACTGAAGAGACTGAAGCCCAAGCCCAAGGCTGCGTAACTGAAGCATGC AGTTGCCATCTTATTGTAGCAGTCTTTCCAAGATGAATTGTCGTAGCACAC GTTTGGAAATTTATAGTGCATTTAGTGTAGAGGGAAGCTGAACATGTTCACGTTGAAGCTAAGTGTAGTAGGATCATGTATGTGGTCTAACTCTTACAGTTAAAGCAGGGTTTTGAAGTACATGAGCAGATTTCCGTGCGTGTTGTTGCAATAAAGTTTC ] [+] EMBL C97630 [ gGCACTTGCCGGAGTTTTCCCTGTACTCACAACTGAAGAGACTGAAGCCCAANCCCAAGGCTGCGTAACTGAAACATGC AGTTGCCATCTTATTGTAGCAGTCTTTCCAAGATGAATTGTCGTAGCACAC GTTTGGAAATTTATAGTGCATTTAGTGTAGAGGGAANCTGAACATGTTCACGTTGAANCTAAGTGTAGTAGGANCATGTATGTGGTCTAACTCTTACAGTTAAANCAGGGTTTTGAAGTACATGAGCAGATTTCCGTGCGTGTTGTTGCAATAAAaaaaaaaaa ] consensusID : consensus_15355#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCTTCGGAGAGAAGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATTTTGGAGTGCAATGGCCTCAAATGTCACCTTCCCAGTCAAGGAATGTGTTGAGCAAGAAGCTTATGGTGGAGAAGAATGACATCACTGTAATGATTGAGAAGA] [-] EMBL OSAA31803 [GTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCTTCGGAGAGAAGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATTTTGGAGTGCAATGGCCTCAAATGTCACCTTCCCAGTCAAGGAATGTGTTGAGCAAGAAGCTTATGGTGGAGAAGAATGACATCACTGTAATGATTGAGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15355#0 -------CGAGCACTCCGCCGCCGCCGCCGCCGCCGCCTCGACGCATCCGCTTCCCCCCA 53 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TCCCCCTCGACCTCCCCGCCGC-GCCACCACCTCCTCCTCCTC-CAAGCTCTCCACCCCA 58 consensus_15355#0 CGCGAGCCG-AAGCTTCTAGAACCTTCGAGGCCGCGGCTCCCACGGG------------- 99 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 CGCACTCCGGAAGCTTCTAGAACCTCCGGCCTCCCCTTCCCCCGGGGGAACCTTCTCGCC 118 consensus_15355#0 -----CGGCAATGCAGAGCGCGGCGGCCG---TCGGGCTCCTCCGGCCATGCGGCGCCAC 151 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TCCCGCCGCCATGCAGAGCGCCGCGGCGGCGTTCGGCCTCGTCCGGCCGTGC----CCCG 174 consensus_15355#0 CACCGCCGCCGCCCCGCTCCAGCTCCG-CAACCCTAGCCCCCGGGGC-TTCGGCGTCGGA 209 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 CGCGGCCGCCGCTCCAGCTGGGCCCCGGCAGCAGTAGCTGTCGTCCCATCCTGCTCCATG 234 consensus_15355#0 GTCGGGCAGCCGCTGCTCCCGCCGAGGGGGCTCCGC-----CTCTCCGCCGTGGCCCCGC 264 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 CCCGGCCCCTCGCCGCCGGCATCGCCTCCTCTTCGCGAGGGCCCGCCGCCGTGGCGGCGC 294 consensus_15355#0 G----CGCGGGCATCTCCGCCCGGCGCATCGGGCTCGTGCCGGCCTCCCCGGAGCAGGAG 320 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 GGTCGCTTGGGCGGCTGCTGCTGCTGCCGCCGCCGC-CGCCGATCTCGCCGGACCGGGCG 353 consensus_15355#0 GATGAGCGGCGGCGGGGCGCACGCGACGTGGCCGTGGCGGCGACAGCGGCGGCGGCGGGT 380 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 G------GGAGGGGGAGGGCGCGCCACGTGGC-GTG-CGGCG-CGGCGGCCGGGGACGCC 404 consensus_15355#0 GAGGCAGGGGCGGAGGAGGGTGGAGGGCTCGCGAAGACGCTGCAGCTCGGCGCGCTCTTC 440 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 AAGGCGGAGGAGGAGGAAAGCGG---CCTCGCCAAGACGCTGCAGCTCAGCGCGCTGTTC 461 consensus_15355#0 GGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTTTTGAAGGTT 500 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 GGGCTGTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGGTCCTGAAGGTT 521 consensus_15355#0 TTTCCATACCCCATAAACATCACAAATGTCCAGTTTGCTGTCGGCACTGTCATTGCTCTG 560 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TTCCCATATCCAATAAACATTACAACAGTTCAATTTGCTGTTGGTACTGTCGTTGCTTTG 581 consensus_15355#0 TTCATGTGGATTACCGGTATCCTTAAAAGACCAAAGATCTCCGGTGCGCAGCTTGCTGCT 620 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TTCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGCTCTTTGCC 641 consensus_15355#0 ATCCTTCCTCTCGCTATGGTCCACACCATGGGCAATCTTTTCACGAACATGAGCCTTGGA 680 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 ATCCTTCCTCTAGCTGTGGACCATACTATGGGCAATCTTTTCACTAACATGAGCCTGGGG 701 consensus_15355#0 AAGGTTGCAGTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTTTCAGTTCTG 740 consensus_15355#2 ---------GTGTCATTTACACATACTATCAAGGCTATGGAGCCTTTCTTTTCAGTTCTG 51 consensus_15355#1 AAGGTTGCTGTGTCATTCACACATACCATCAAAGCTATGGAACCTTTCTTTTCTGTTCTC 761 ******** ******** ***** ******** *********** ***** consensus_15355#0 CTTTCAGCACTTTTCCTCGGAGAGATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCA 800 consensus_15355#2 CTTTCAGCACTTTTCTTCGGAGAGAAGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCA 111 consensus_15355#1 CTCTCTGCAATTTTCCTTGGCGAGTTGCCTACAGTTTGGGTGATACTTTCACTTCTTCCG 821 ** ** *** ***** * ** *** ****** ** ** ** * ** *** **** consensus_15355#0 ATTGTTGGTGGTGTGGCATT-GGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATT 859 consensus_15355#2 ATTGTTGGTGGTGTGGCATT-GGCATCTCTTACTGAAGCTTCATTTAACTGGGCTGGATT 170 consensus_15355#1 ATTGTTGGTGGTGTAGCATTTGGCATCTCTTACTGAGGCTTCCTTCAACTGGGCTGGGTT 881 ************** ***** *************** ***** ** *********** ** consensus_15355#0 TTGGAGTGCAATGGCCTCAAATGTCACCTTCC-AGTCAAGGAATGTGTTGAGCAAGAAGC 918 consensus_15355#2 TTGGAGTGCAATGGCCTCAAATGTCACCTTCCCAGTCAAGGAATGTGTTGAGCAAGAAGC 230 consensus_15355#1 TTGGAGTGCAATGGCTTCAAATGTCACCTTCC-AGTCAAGGAATGTGCTGAGCAAGAAAC 940 *************** **************** ************** ********** * consensus_15355#0 TTATGGTGAAGAAGGAGGA-ATCTCTGGACAACATTACCCTCTTCTCAATCATTACAGTG 977 consensus_15355#2 TTATGGTGGAGAAGAATGACATCACTGTA-ATGATTGAGAAGA----------------- 272 consensus_15355#1 TCATGGTTAAAAAGGAGGA-ATCTCTTGACAACATTAATCTTTTCTCAATCATAACTGTG 999 * ***** * *** * ** *** ** * * *** consensus_15355#0 ATGTCATTCTTCCTCTTGGCCCCAGTAACCTTGCTAACAGAGGGTGTCAAAGTCACTCCG 1037 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 ATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCT 1059 consensus_15355#0 ACAGTTCTGCAGTCTGCTGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCT 1097 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 ACAGTTTTGCAATCTGCTGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCT 1119 consensus_15355#0 GCGTTCTGTTTCCATGCATACCAACAGGTGTCGTACATGATCCTGGCAAGAGTGTCCCCT 1157 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 GCACTTTGTTTCCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCT 1179 consensus_15355#0 GTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGTGACATCCGTTCTG 1217 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 GTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTG 1239 consensus_15355#0 TTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGA 1277 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCACTTGCCGGA 1299 consensus_15355#0 GTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGT 1337 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 GTTTTCCTGTACTCACAACTGAAGAGACTGAAGCCCAAGCCCAAGGCTGCGTAACTGAAG 1359 consensus_15355#0 CTTGGTATCTATCGTGAAGAACCGTAGAAGCATTGCCACACGCCATCGGAATGAGTGCCT 1397 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 CATG-CAGTTGCCATCT--TATTGTAGCAGTCTTTCCAAGATGAATTGTCGTA---GCAC 1413 consensus_15355#0 TAGCTTAGAATGATCCTTGGAGAAGCTCCATCCAGTGAACTGATGCTGCTGTGTGTATCG 1457 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 ACGTTTGGAA--ATTTATAGTG------CATTTAGTGTAGAGG-GAAGCTGAACAT---G 1461 consensus_15355#0 TTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACC 1517 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TTCAC-GTTGAA----------GCTAAGTGTAGTAGGATCAT-GTATGTGGTCTAAC-TC 1508 consensus_15355#0 TTATGCTTGAACAGTCAATTATTTTGTTGTATCAATAAATTTC-GTGCAATATAACGTTA 1576 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TTACAGTTAAA--GCAGGGTTTTGAAGTACATGAGCAGATTTCCGTGCGTGTTGTTGCAA 1566 consensus_15355#0 TATTATCTCTGTTTCTTTATGGAAGTATTACTATCCTTGTATTATAAATTAAAAAGTAAA 1636 consensus_15355#2 ------------------------------------------------------------ consensus_15355#1 TAAAGTTTCGGCTTC--------------------------------------------- 1581 consensus_15355#0 TTTCATAAAACTATAGATATCTTGATCAAA 1666 consensus_15355#2 ------------------------------ consensus_15355#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||