|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1440 fasta sequence
[ACAAACGGCATCAATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA-TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA-AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC-GCTACAATGATCCTAGAACA-CAGAGCTTTATAAT-GAGGAATGAGGTGCTGATAT-GGTTAAACG-ACTTCACGCT-GGAGTAGTAGTCTTCA-CTGTCTACAAC-AC-ATTT-CT-GC-AACATATAGACAC--TTAGCA-TTGGAGCTTTCGGAGCATCA-TAG-CAAGGTGAAAAAAATTAGGAAGATGCA-TGGATGAAATGATAGGAGAA-TGTAAATACCGAAAAGGTCACTATATTAC-ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAAGAATAACCCCCNCCTAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK065544 [ACAAACGGCATCAATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACTTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGGCGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGA ]
[+] EMBL CB682204 [ GCATCCATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCACGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATT ]
[+] EMBL CB679238 [ ATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCATCACTCAGGCTTCTGATGACAAACTCTCAGATGT ]
[+] EMBL CB679433 [ ATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGA ]
[+] EMBL CA757225 [ TCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGGCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGAGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGCCCCGACTTCTACCTCCACCACGTCGAG CAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCANAGTACCTTATCCTGAANAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGG ]
[+] EMBL CB673550 [ GTCTTCACCGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTATGAAGATGCA TG ]
[-] EMBL CB679239 [ GGGACTCAATACAGAATAATGAATATTTCTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTTTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACTCGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTTCAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCCCGCT GGAGTAGTAGTCTTCA CTGTCT CAAC AC ATTTCCT GC AACATATAGACAC TTAGCA TTGGAGCTTTGGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGACGCA TGGATGAAATGATAGGCGAACTGTAAATGCCGAAAAGGTCGGTATAT ]
[-] EMBL CB682203 [ AAGACCCTTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAAAAAgg ]
[-] EMBL CB682205 [ GATATAGAAACACCAAAGTACCTTATCGTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTT GAACAAAAAAAAgg ]
[-] EMBL CB673551 [ ACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAGATGAAACTGTTTAGAACAAAAGGAATACCCC ]
[+] EMBL AU056388 [ TATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCCGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGNTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAATGGAGGAATGAGGTGCTGATATGGGTTAAACG ACTTCACGCTGGGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACANATAGGCAC TTA ]
[+] EMBL AU055988 [ GTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CTNGC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATA ]
[+] EMBL BM421290 [ TGGACAGCTTACCAGCTCCCAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCC AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGGGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTTCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCC TTGGAGCTTTCGGAGCATCA TAGCCAAGGTGAAAAAAATTAGGAAGATGCACTGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTACNCTGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAAC AAAGTGAAATGAAC AAATGAAACTGTTTAGAACAAAAGGAATAACTCCCNCCTAGCCCAAAAAAAAA ]
[+] EMBL BM421340 [ ccgAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCACTTGCTGCAGTGAAAAAATTCAGTGGGAGACCC AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCNAAGATGGGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACGATGATCCTAGAACACCAGAGCTTTATAAT GAGGAATGAGGTTCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCC CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAAC AAAGTGAAATGAACCAAATGAAACTGTTTAGAACAAAAAa ]
[+] EMBL BM421514 [ CGGAA CTGTCAACTTGCGAAA GTAGAAGGT GCA TTGCTCCAGTGAAAAAATTCAGTGGGAGACCATAAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGGGTTGAAGCCTCAACATGGTTGTTTGCTTGCACAGCTACAATGATCCTAGAACACCAGAGCTTTATAAT GAGGAATGAGGTTCTGATAT GGTTAAACGTACTTCACGCT GGAGTAGTAGTCTTCACCTGTCTACAACAACAATTT CT GCAAACATATAGACACCTTTAGCACTTGGAGCTTTCGGAGCATCATTAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCG AAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACTCCCACCTAG ]
[+] EMBL AU197819 [ AGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT NT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCNCTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAA ]
[-] EMBL CF302554 [ TT TT GC AACATATAGACAT TTAGCA TTGGAGCTTTGGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAAATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTTTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACCCCC CCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[GATAAGGTACTGTGGTGTTTCTATATCAGGGGTCTTGTAAATCCGTAGCTGCTTGAAGACATCCCCCAGTCCTTCAAAAGAAAAATACAGGTGTAGTCATTGCAATCTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTGTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGGTGAAATGAACAAAATGAAAAGGGTAGAACAAAAGGAATAACCCCCACTTAGCCAAAAAAAAGG]
[-] EMBL CB679434 [GATAAGGTACTGTGGTGTTTCTATATCAGGGGTCTTGTAAATCCGTAGCTGCTTGAAGACATCCCCCAGTCCTTCAAAAGAAAAATACAGGTGTAGTCATTGCAATCTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTGTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGGTGAAATGAACAAAATGAAAAGGGTAGAACAAAAGGAATAACCCCCACTTAGCCAAAAAAAAGG]
consensusID : consensus_15363#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence
[CCCCCCACGCGTCCGATCCAGATAGTTTTCCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGANGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGNCCAAAAGAGGAAATTGTGATCCAGAAAGAAAAAGANTGCGCTCCCAATTACTCAAAGATGTGTTGAANCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACCCCCACCTAGCCACCCTCATTCCCAGTGAAAAAAAAAAAAAAAAAAAAAACCAAAANCN]
[+] EMBL AU055989 [CCCCCCACGCGTCCGATCCAGATAGTTTTCCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGANGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGNCCAAAAGAGGAAATTGTGATCCAGAAAGAAAAAGANTGCGCTCCCAATTACTCAAAGATGTGTTGAANCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACCCCCACCTAGCCACCCTCATTCCCAGTGAAAAAAA ]
[+] EMBL AU056389 [ GAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGNAGTCTTCACTGTCNACAACACATTTCTGCAACNTNTAGACNCTTAGCATTGGAGCTTTCGGAGCATCATAGCANGGTGNAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTNTAGTCCANATGAAAAATGTTTGTGTATAANAAAAGTGAAATGAACAAAATGAAACTGNTTAGAACAAAAGGAATAACCCCCACTTAGCCACCNTNATTCCNAGTGACAAAAAAAAAAAAAAAAAAAACCAAAANCN]
consensusID : consensus_15363#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence
[CTGGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCACAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGT]
[+] EMBL CF333864 [CTGGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCACAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15363#0 ACAAACGGCATCAATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACC 60
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 GGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATC 120
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 CTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGA 180
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 GGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGA 240
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 CCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCG 300
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 CTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCT 360
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 CCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTA 420
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 CGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGA 480
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 GCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAG 540
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 CCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGG 600
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 GGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCT 660
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 TATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGA 720
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------------------------------------------
consensus_15363#0 AGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTT 780
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 ------------------------GATAAGGTACTGTGGTGTTTCTATATCAGGGGTCTT 36
consensus_15363#0 TGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTC 840
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ------------------------------------------------------------
consensus_15363#1 GTAAATCCGTAGCTGCTTGAAGACATCCCCCAGTCCTTCAAAAGAAAAATACAGGTGTAG 96
consensus_15363#0 TGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGA 900
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 ----------CCCCCCACGCGTCCGATCCAGATAGTTTTCCCGATGAACAAAGACTTGGA 50
consensus_15363#1 TCATTGCAATCTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGA 156
consensus_15363#0 CAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGC 960
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 CAGCTTACCAGCTCCAAACACGGANGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGC 110
consensus_15363#1 CAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGC 216
consensus_15363#0 TGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGA 1020
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 TGCAGTGAAAAAATTCAGTGGGAGNCCAAAAGAGGAAATTGTGATCCAGAAAGAAAAAGA 170
consensus_15363#1 TGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGA 276
consensus_15363#0 GCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACG 1080
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 N-TGCGCTCCCAATTACTCAAAGATGTGTTGAANCCTCAACATGGTTGTTTGCTTGCACG 229
consensus_15363#1 GCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACG 336
consensus_15363#0 CTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAA 1140
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 CTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAA 289
consensus_15363#1 CTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAA 396
consensus_15363#0 CGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGAC 1200
consensus_15363#3 ---------------------------CTGGTCTACAACACATTTCTGCAACATATAGAC 33
consensus_15363#2 CGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGAC 349
consensus_15363#1 CGACTTCACGCTGGAGTAGTAGTCTTCACTGTGTACAACACATTTCTGCAACATATAGAC 456
** ***************************
consensus_15363#0 ACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATG 1260
consensus_15363#3 ACTTAGCATTGGAGCTTTCGGAGCATCACAGCAAGGTGAAAAAAATTAGGAAGATGCATG 93
consensus_15363#2 ACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATG 409
consensus_15363#1 ACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATG 516
**************************** *******************************
consensus_15363#0 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 1320
consensus_15363#3 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 153
consensus_15363#2 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 469
consensus_15363#1 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 576
************************************************************
consensus_15363#0 TCCATATGAAAAATGTTTGTGTATAACAAAAG-TGAAATGAACAAAATGAAACTGTTTAG 1379
consensus_15363#3 TCCATATGAAAAAA--------AAAAAAAAAA-AAAAAAAAAAAAAAAACCACTGT---- 200
consensus_15363#2 TCCATATGAAAAATGTTTGTGTATAACAAAAG-TGAAATGAACAAAATGAAACTGTTTAG 528
consensus_15363#1 TCCATATGAAAAATGTTTGTGTATAACAAAAGGTGAAATGAACAAAATGAAAA-GGGTAG 635
************* * ** **** *** ** **** * *
consensus_15363#0 AACAAAAAGAATAACCCCCNCCTAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1439
consensus_15363#3 ------------------------------------------------------------
consensus_15363#2 AACAAAAGGAATAACCCCCACCTAGCCACCCTCATTCCCAGTGAAAAAAAAAAAAAAAAA 588
consensus_15363#1 AACAAAAGGAATAACCCCCACTTAGCCAAAAAAAAGG----------------------- 672
consensus_15363#0 A------------- 1440
consensus_15363#3 --------------
consensus_15363#2 AAAAACCAAAANCN 602
consensus_15363#1 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||