These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 892 fasta sequence [CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG-GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC-GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC-GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT-GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG---TGAAATGCTTTCTCGATGTAAGACAAGAAAGC---TAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK064849 [CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGG TGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG TGAAATGCTTTCTCGATGTAAGACAAGAAAGC TAGTAGCAAAATCATACTATT ] [+] EMBL AK119599 [ AGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG TGAAATGCTTTCTCGATGTAAGACAAGAAAGC TAGTAGCAAAATCAT ] [+] EMBL AK065690 [ CTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG TGAAATGCTTTCTCGATGTAAGACAAGAAAGC TAGTAGCAAAATCATACTATT ] [+] EMBL AK062091 [ TCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGGCCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG TGAAATGCTTTCTCGATGTAAGACAAGAAAGC TAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCT ] [+] EMBL BP184476 [ AGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCG ] [+] EMBL C73857 [ TCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACANGTCGGCGTTCGGCAACAAGNACATCGAGAGCCCGGAGAC ] [+] EMBL CF325298 [ TAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAA GAGGAGG GC GGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGACNGCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCG ] [+] EMBL OSS14863A [ CTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGANGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGNTGGCGAGCGACACGTNGGCGTTCGCCAACACGTACATCGAGAGCCGNGAGACGNCGa ] [+] EMBL CA754054 [ gttctcCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGNAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGNCGTCGTCGCACCCGCTGTCNGAGGCG AGGCAATCGAAGCCAGCCCGTAGTGGATGCGATG ACACACACACACACACACAGA ] [+] EMBL AU065961 [ AGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGA CCTGTGAACCCGTTCAGCATCTTTGGGACGACGGTNGCNGCGGACG GTNGCTGGCGAGCGACACGTCGGCGTTCG CAACACGTACATCGAGAGCCGGGANAC GCGNAGG GTACGTGTTCCGGGCGGACCTNCCGGCGGGGGTGAAGATGGANGAGGTGCGGGTCGAGGTGGACGAGGGGAACGTGCTGGTGATC ] [+] EMBL OSS13055A [ GTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGNGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGANTNGCTGGCGANCAACACGTCGGCGTTCG CAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTTTTNCGGGCGGACCTGCCGGCGGGGGTNAAGAAGGAGGAGNCGGGGNTNGAGGTGGACGAGGGGAACGTNCTGGTGATC ] [+] EMBL CB681826 [ GTTCCCCTTCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG TGAAATGCTTTCTCGATGTAAGACAAGAAAGC TAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCC ] [-] EMBL BI306548 [ GTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGCC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACA A AGTCAGTCAATCCAACGATCCGTACGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATG ] [+] EMBL CF196255 [ ATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTNNNNGGACGGCGGCATGCTCACCGT ] [+] EMBL AU172756 [ ttGCCGCCGCCGCACCCGTCCCCGCCGTTGTNGCACCCCCTGTC GAGGCGAAGGCAATNGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATNATAAGTTCAAAGTGCTTGCGAGTAAGGNGCNTNCTGNACTTTTGGTTTAATTACCTTTGGTG TGAAATGCTTTNTCGATGTAANACAANAAAGC TAGTAGCAAAATCATACTATTTGCTTGATGCAANACATGTTCCATNTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCTTGCCCGCCGGGGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAACGTTGCTGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGGTCGCACCACATCGAGCGCAGTGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGACGCCCGTCGTCGNCCTCGTCAGGNCGTCCATGGACGGCGGCATGTTNACCGTCACCGTGCCCAAGNTGGTCACTGACCAAGNAGCCGCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTGTGAAATGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCATATGAACATTATCAATCATTCAAAAAAA] [+] EMBL AU089765 [CCTTGCCCGCCGGGGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAACGTTGCTGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGGTCGCACCACATCGAGCGCAGTGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGACGCCCGTCGTCGNCCTCGTCAGGNCGTCCATGGACGGCGGCATGTTNACCGTCACCGTGCCCAAGNTGGTCACTGACCAAGNAGCCGCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTGTGAAATGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCATATGAACATTATCAATCATTCAAAAAAA] consensusID : consensus_15370#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 429 fasta sequence [TTCCACCTGCCCCGACGACGCCGTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCATACTCACCGTCTCCCGTGCCCAAGGTGGTCTCTTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCC-CCGTCGGTCGCACCCGTCTTCCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACAAA-GTCA-GTCAATCC-ACGATCCGTACGTANTAC-GTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGTAGTAG-C-AAATCATACTATTTGCTTGATGC-ATACATGTTCCA-TCTTAGTTCCCTCTTCTGAAAAAAAAAA] [+] EMBL BI807730 [TTCCACCTGCCCCGACGACGCCGTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCATACTCACCGTCTCCCGTGCCCAAGGTGGTCTCTTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCC CCGTCGGTCGCACCCGTCTTCCGAGGCGAAGGCTATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACAAA GTCA GTCAATCC ACGATCCGTACGTA TAC GTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAG ACAGAAAGCTAGTAGTAG CAAAATCATACTATTTGCTTGATGC ATACATGTTCCA TCTT ] [+] EMBL BQ908919 [ CACCGTC ACCGTGCCCAAGGTGGTCAC TGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTC GTCGCACCCG CTGCCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACAAAGGTCAGGTCAATCC ACGATCCGTACGTANTACGGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGTAGTAG C AAATCATACTATTTGCTTGATGC ATACATGTTCCA TCTTAGTTCCCTCTTCTGAAAAAAAAAA] [+] EMBL BI806017 [ GGC ATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACAC AA GTCA GTCAATCCAACGATCCGTACGTATTAC GTTGTCGTCGATGATAAGTTCCAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGAC CAGAAAGCTAGTAGTAGCC AAATCATACTATTTGCTTGATGC ATACATGTTCCACTCTTAGTT ] [+] EMBL BI808420 [ AGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATG AACGCTTTCTCGATGTAAGACA AGAAAGCTAGTAGTAG C AAATCATACTATTTGCTTGATGCAATACATGTCCCC TCTTAGTTCCCTCTTC AAAAAAA ] consensusID : consensus_15370#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence [TTTTTTTTTTTTTTTTTCAAAAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCAAATAGTATGATTTTGCTACCCCTTGTCTCGTCCTC] [+] EMBL CA761072 [TTTTTTTTTTTTTTTTTCAAAAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCAAATAGTATGATTTTGCTACCCCTTGTCTCGTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15370#1 ------------------------------------------------------------ consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAG 60 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 ------------------------------------------------------------ consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 TTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGT 120 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 ------------------------------------------------------------ consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 GTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTGGAACCCG 180 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 ------------------------------------------------------------ consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 TTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCG 240 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 ------------------------------------------------------CCTTGC 6 consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 TTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGAC 300 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 CCGCCGG-GGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAACGTTGC 65 consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 CTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAAC--GTGC 358 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 TGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGGTCGCA 125 consensus_15370#2 ------------------------------------------------------------ consensus_15370#0 TGGTGATCA--CCGGCGAGCGCAGCGT-CCGGCGGGAGGAG--AAGGGCCAGCGGTCGCA 413 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 CCACATCGAGCGCAG-TGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGACGCCC 184 consensus_15370#2 -------------------------------------TTCCACCTGCCCCGACGACGCC- 22 consensus_15370#0 CCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCT-CCCCGACGACGCC- 471 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 GTCGTCGNCCTCGTCAGGNCGTCCATGGACG-GCGGCATGTTNACCGTCACC-GTGCCCA 242 consensus_15370#2 GTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCATACTCACCGTCTCCCGTGCCCA 82 consensus_15370#0 GTCGTCGACCTCGTCAGGGCGTCCATGGACG-GCGGCATGCTCACCGTCACC-GTGCCCA 529 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 AGNTGGTCACTGACCAAGNAGCC-GCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTCG 301 consensus_15370#2 AGGTGGTCTCTTGACAAGCAGCCCGCCATCGCC-GCCGCC-GCACCCGTCCCCCCGTCGG 140 consensus_15370#0 AGGTGGTCACTGA-CAAGCAGCCCGCCATCGCC-GCCGCC-GCACCCGTCCCCGCCGTCG 586 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 TCGCACCCG-CTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC 360 consensus_15370#2 TCGCACCCGTCTTCCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC 200 consensus_15370#0 TCGCACCCG-CTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC 645 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 ACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTAT-ACGTTGTCGTCG 419 consensus_15370#2 ACACACACACACA----AAGTCAGTCAATCCA-CGATCCGTACGTANTACGTTGTCGTCG 255 consensus_15370#0 ACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTAT-ACGTTGTCGTCG 704 consensus_15370#3 ------------------------------------------------------------ consensus_15370#1 ATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTT 479 consensus_15370#2 ATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTC 315 consensus_15370#0 ATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTT 764 consensus_15370#3 ------------------------------------------------TTTTTTTTTTTT 12 *** ** * consensus_15370#1 TGGTGTGA---AATGCTTTCTCGATGTAAGACA-AGAAAGCTAGTAGCA--AAATCATAC 533 consensus_15370#2 TGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGTAGTAGCAAATCATAC 375 consensus_15370#0 TGGTGTGA---AATGCTTTCTCGATGTAAGACA-AGAAAGCTAGTAGCA--AAATCATAC 818 consensus_15370#3 TTTTTCAA---AAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCA---AATAGTAT 66 * * * ** * * *** * ** ** * *** ** consensus_15370#1 TATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCA 593 consensus_15370#2 TATTTGCTTGATGCA-TACATGTTCCATCTTAGTTCCCTCTTCTGAAAAAAAAAA----- 429 consensus_15370#0 TATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAA 878 consensus_15370#3 GATT---TTGCTAC--CCCTTGTCTCGTCCTC---------------------------- 93 *** *** * * * *** * ** * consensus_15370#1 TATGAACATTATCAATCATTCAAAAAAA 621 consensus_15370#2 ---------------------------- consensus_15370#0 AAAAAAAAAAAAAA-------------- 892 consensus_15370#3 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||