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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 833 fasta sequence
[TTATCTACATCTTCTTCTGCTTCTTCCTTCCAGCTTGCAAAACTGGCTTAATTGATTCCATATTTCCATTCCACACGTCTTGAGAGCTAATCTTTTGGAAGAGGAAACACGTCTTAGCTTGAGTTAATAATTCCATCGATCGTCTCCTCTCCATTGACTTTAATTGAAACGCCCCCTTTTCTTCGCTCTGCGGCTACCTATCTCTTGTATTTATATCCCGGATAGCTACCTGTGCTTCAATTCCTCTGCAAATCCATCCA-TATT-A-G-CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC---CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA-CTGAAGAACAAGTGAT---GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC--ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAAAGTTTTCTGAAAAAAAAA]
[+] EMBL AK063119 [TTATCTACATCTTCTTCTGCTTCTTCCTTCCAGCTTGCAAAACTGGCTTAATTGATTCCATATTTCCATTCCACACGTCTTGAGAGCTAATCTTTTGGAAGAGGAAACACGTCTTAGCTTGAGTTAATAATTCCATCGATCGTCTCCTCTCCATTGACTTTAATTGAAACGCCCCCTTTTCTTCGCTCTGCGGCTACCTATCTCTTGTATTTATATCCCGGATAGCTACCTGTGCTTCAATTCCTCTGCAAATCCATCCA TATT A G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTA ]
[+] EMBL CF320133 [ TGCAAATCCATCCATTATT A G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGC GCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCCTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTNTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTT ]
[+] EMBL CF321220 [ AATCCATCCA TATT A GTCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTGTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTACTTGTGTATGTATGAGTGTATGACACACGCTACTTGCTTTTCTTGATTCATTCTTTCTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTA ]
[+] EMBL CF318832 [ AATCCATCCA TATTNA G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGA CTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACA ]
[+] EMBL CF319550 [ TCCATCCA TATTNA G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCCGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAG ]
[+] EMBL CF313955 [ ATCCA TATT ANG CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGC GCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAA ]
[+] EMBL AK106364 [ CA TATT A G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGA CTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACAACTAATGGAACGTTTTTC ]
[-] EMBL CF320191 [ TGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGATCTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATAaaaa ]
[-] EMBL CF320134 [ GTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCCTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCCCCTGCAGTTTTCTGAAAAAAAAA]
[-] EMBL CF313956 [ TCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTTTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTGGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAAAaaaaaaaaa ]
[-] EMBL CF314348 [ CAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAA ]
consensusID : consensus_15378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[TGGACTGAAGGAGTAGAAAAATTCCTCTGCAATCCTCCTATTAGCTTCCAACACAAGGAGATCCAACAATGGCCCATTGCTTTGTCAGCACAGAACCTGCGCTGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGCCGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTACATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAA]
[+] EMBL CF314347 [TGGACTGAAGGAGTAGAAAAATTCCTCTGCAATCCTCCTATTAGCTTCCAACACAAGGAGATCCAACAATGGCCCATTGCTTTGTCAGCACAGAACCTGCGCTGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGCCGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTACATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAA]
consensusID : consensus_15378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 564 fasta sequence
[GGACCTGCCTGGACTGAAGAGTGAAAAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA-CATGAGATCGATTTGCTAAAAAAAAAAAA]
[+] EMBL CF320192 [GGACCTGCCTGGACTGAAGAGTGAAAAAATCC TCC TATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTG AGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTACATATAaaa ]
[+] EMBL CF320865 [ tgcAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAATTGCGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTACTTTATATCTGATGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAAAAAAAAAAAA]
[+] EMBL CF314041 [ TCCATATTAGCTTCC ACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTG AGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTGTGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACCATGAGATCGATTTGCTAAAAA ]
[-] EMBL CF314042 [ tcCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTGTGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAAAAAA ]
[+] EMBL CF321531 [ CATATTAGCTTCC ACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAGCTAAAAA ]
[+] EMBL AU085733 [ ACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGANGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAATTAGCTTAGCTAGCTGCTCGTACTTG CATCTT CTCTTCCT ]
[-] EMBL CF321532 [ TCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAGCTAAAAAA ]
consensusID : consensus_15378#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence
[CGCCGACGACGCCGATGCAGCCGCAGCTGAAGCNCGAATCGGAGACAGCATCAGCAGATACGNCGACGCGGACTGNAGAACAAGTGGTGCAGCAGCAGCAGNTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGNAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTNTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085734 [CGCCGACGACGCCGATGCAGCCGCAGCTGAAGCNCGAATCGGAGACAGCATCAGCAGATACGNCGACGCGGACTGNAGAACAAGTGGTGCAGCAGCAGCAGNTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGNAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTNTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAA ]
[-] EMBL CF318831 [ CAGCATCAGCAGATACGACGACGAGGATTGAAGAACAAGTGGTGCACCACCAGCAGCTGTTTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCCCACCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGTTGGTACTTGCCATTTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACCCAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATCCAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCACCAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15378#0 TTATCTACATCTTCTTCTGCTTCTTCCTTCCAGCTTGCAAAACTGGCTTAATTGATTCCA 60
consensus_15378#1 ------------------------------------------------------------
consensus_15378#2 ------------------------------------------------------------
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 TATTTCCATTCCACACGTCTTGAGAGCTAATCTTTTGGAAGAGGAAACACGTCTTAGCTT 120
consensus_15378#1 ------------------------------------------------------------
consensus_15378#2 ------------------------------------------------------------
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 GAGTTAATAATTCCATCGATCGTCTCCTCTCCATTGACTTTAATTGAAACGCCCCCTTTT 180
consensus_15378#1 ------------------------------------------------------------
consensus_15378#2 ------------------------------------------------------------
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 CTTCGCTCTGCGGCTACCTATCTCTTGTATTTATATCCCGGATAGCTACCTGTGCTTCAA 240
consensus_15378#1 --------------------------------------TGGACTGA-AGGAGTAGAAAAA 21
consensus_15378#2 -------------------------------------------GGACCTGCCTGGACTGA 17
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 TTCCTCTGCAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACA 300
consensus_15378#1 TTCCTCTGCAATCCT---CCTATTAGCTTCCAACACAAGGAGATC-CAACAATGGCC-CA 76
consensus_15378#2 AGAGTGAAAAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACA 77
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 TTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTG 360
consensus_15378#1 TTGCT-TTGTCAG--CACAGAA---CCTGCG--CTGTCGTCGTCGTTGCTGCTGCTTGTG 128
consensus_15378#2 TTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTG 137
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 CTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTT 420
consensus_15378#1 CTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTT 188
consensus_15378#2 CTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTC 197
consensus_15378#3 ------------------------------------------------------------
consensus_15378#0 CCGTCGCCGACG---CCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCA 477
consensus_15378#1 CCGTCGCCGACG---CCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCA 245
consensus_15378#2 CCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCA 257
consensus_15378#3 ----CGCCGACGACGCCGATGCAGCCGCAGCTGAAGCNCGAATCGGAGACAGCATCAGCA 56
******** *********** ********** **********************
consensus_15378#0 GATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGC---TGTCTTGGTTGAGA 534
consensus_15378#1 GATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGC---TGTCTTGGTTGAGA 302
consensus_15378#2 GATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGA 317
consensus_15378#3 GATACGNCGACGCGGACTGNAGAACAAGTGGTGCAGCAGCAGCAGNTGTCTTGGTTGAGA 116
****** ***** ***** ********** ************ **************
consensus_15378#0 AGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 594
consensus_15378#1 AGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 362
consensus_15378#2 AGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 377
consensus_15378#3 AGTATGAAGCCCAGAGGNAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 176
** ************** ******** *********************************
consensus_15378#0 AGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTT 654
consensus_15378#1 AGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTT 422
consensus_15378#2 AGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTT 437
consensus_15378#3 AGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTNTGTAGGCTCTCGATCTTAGTT 236
******** ****** ***** ********* ****** ******** ** *********
consensus_15378#0 GTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGA 714
consensus_15378#1 GTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGA 482
consensus_15378#2 GTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGA 497
consensus_15378#3 GTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGA 296
************************ ******* ************* ** * * ******
consensus_15378#0 TTTGTTCGATATACAGAAACTATGTACATATATACA--CATGAGATCGATTTGCTAGTTA 772
consensus_15378#1 TTTGTTCGATATACAGAAACTATGTACATATATACA--CATGAGATCGATTTGCTAGTTA 540
consensus_15378#2 TTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAAAAA 557
consensus_15378#3 TTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTA 356
****** *************************** * ****************** *
consensus_15378#0 GTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAAAGTTTTCTGAAAAAAAA 832
consensus_15378#1 GTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAA------------------ 582
consensus_15378#2 AAAAAAA----------------------------------------------------- 564
consensus_15378#3 GTTCGCAACAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAAAAAAAAAAAAAA 416
*
consensus_15378#0 A------ 833
consensus_15378#1 -------
consensus_15378#2 -------
consensus_15378#3 AAAAAAA 423
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||