Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1538 cluster # 1538       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1538#0 length = 989 sequences # 2  

consensusID : consensus_1538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 989
fasta sequence
                              [GGAGGCGATGTTCCGGTTCATGTCCAAGAACGCCGCCGTCGTATTATTCGCTGATCCCGAGGCGGCTGCGGCCGTACGTGACGGTGTCGTCGGCGGCGTCGGCGTGCAGCACGGACGTGGCGGCGGCGGCGAGCGGCGAGCACTCGTGGAACGACACGCTCGTCGTCCCCGTGGGCGCGGAGTTCCTCGAGAGCCGCGGCGGCGGCGGCGTGCACGTGGCGGTGTACTCGGAGCCGGCGTGCCGGCTCGTCGGCGGCGCCACGCCGCTGGGGTGGTGCAGGATCCCCGCCGCCGACGTGCTCGACGGCCTCCGCCCGCCGCGCGCGCTCCGCCGGCTCAGCTACTCCCTCCGCTGCCCGCGCACCGGCGGCCCCGCCCGCGGCGTCGTGCACCTCGCCGTCCGCGTCCTCGGCGACCTCGTCCCGCCGCCTCCGCCGCAGCATGCCCCGTCGACGCCGCCGGCGCAGCCAGGGTGGTGCCGCGTGGCGATGGGCATCCCGGTGTCGGGGACATCCGCCGCCGTGGTGGGGATGCCGGCGTGGGCGGCGTGGGGCGGCGAGGCGGCGGCGTCGCGGTGATCGATCGCGACGCGGCGAGGCAACGAGAGAGACTACCCGTGG-AAAAACGGTGGAAAAATTCATCGCCGGGTCGGACTTATTTTTATTTATTTTTTGTTCTGATCGAGACGTTGACTAACCCGGTAATGGGTTGGTCAAACGTCTCGTCGGCTCGTCGCGTTGTTCTGCGTGTGTACGTATATACGTACGTACATGCCCGGAAGCTTCCTCTCGCAGCTATACGTATGTACATACAACCCACGTACGTATAGTATCAATCATAAGTGGCTGTACTCGGATTGGTGGTGTATATGTGACTGAACTGTGGGACCAGGGGGTTGCAGGGGTTTTGTAATTGTAACTGTATAAATGATTGCTACCACTTGATTGTGAGATGAATTGATAAGAGAAACCCTAAGTCGAAAAAAAAAA]

[+] EMBL AK110551             [GGAGGCGATGTTCCGGTTCATGTCCAAGAACGCCGCCGTCGTATTATTCGCTGATCCCGAGGCGGCTGCGGCCGTACGTGACGGTGTCGTCGGCGGCGTCGGCGTGCAGCACGGACGTGGCGGCGGCGGCGAGCGGCGAGCACTCGTGGAACGACACGCTCGTCGTCCCCGTGGGCGCGGAGTTCCTCGAGAGCCGCGGCGGCGGCGGCGTGCACGTGGCGGTGTACTCGGAGCCGGCGTGCCGGCTCGTCGGCGGCGCCACGCCGCTGGGGTGGTGCAGGATCCCCGCCGCCGACGTGCTCGACGGCCTCCGCCCGCCGCGCGCGCTCCGCCGGCTCAGCTACTCCCTCCGCTGCCCGCGCACCGGCGGCCCCGCCCGCGGCGTCGTGCACCTCGCCGTCCGCGTCCTCGGCGACCTCGTCCCGCCGCCTCCGCCGCAGCATGCCCCGTCGACGCCGCCGGCGCAGCCAGGGTGGTGCCGCGTGGCGATGGGCATCCCGGTGTCGGGGACATCCGCCGCCGTGGTGGGGATGCCGGCGTGGGCGGCGTGGGGCGGCGAGGCGGCGGCGTCGCGGTGATCGATCGCGACGCGGCGAGGCAACGAGAGAGACTACCCGTGG AAAAACGGTGGAAAAATTCATCGCCGGGTCGGACTTATTTTTATTTATTTTTTGTTCTGATCGAGACGTTGACTAACCCGGTAATGGGTTGGTCAAACGTCTCGTCGGCTCGTCGCGTTGTTCTGCGTGTGTACGTATATACGTACGTACATGCCCGGAAGCTTCCTCTCGCAGCTATACGTATGTACATACAACCCACGTACGTATAGTATCAATCATAAGTGGCTGTACTCGGATTGGTGGTGTATATGTGACTGAACTGTGGGACCAGGGGGTTGCAGGGGTTTTGTAATTGTAACTGTATAAATGATTGCTACCACTTGATTGTGAGATGAATTGATAAGAGAAACCCTA               ]
[+] EMBL BI813357             [                                                                                                                                                                                                                                                                                                                                                                                                                     gtCTC GCGACCTCTTCCC CCGCCTCC CCCAAGCATGCCCCTTCGAC CC CCGGC CA CCAGGGT GT CCGCGT GCGATGGGCATCCC GT TCGGGGACATCC CC CCGTGGTGGGGAT CCGGCGT GGCGGCGTGGGGCGGCGAGGC GCGGCGTC CGGTGATCGATCGCGACGCGGCGAGGCAACGAGAGAGACTACCCGTGGAAAAAACGGTGGAAAAATTCATC CCGGGTCGGACTTATTTTTATTTATTTTTTGTTCTGATCGAGACGTTGACTAACCCGGTAATGGGTTGGTCAAACGTCTCGTCGGCTCGTCGCGTTGTTCTGCGTGTGTACGTATATACGTACGTACATGCCCGGAAGCTTCCTCTCGCAGCTATACGTATGTACATACAACCCACGTACGTATAGTATCAATCATAAGTGGCTGTACTCGGATTGGTGGTGTATATGTGACTGAACTGTGGGACCAGGGGGTTGCAGGGGTTTTGTAATTGTAACTGTATAAATGATTGCTACCACTTGATTGTGAGATGAATTGATAAGAGAAACCCTAAGTCGAAAAAAAAAA]


>consensus_1538#0 GGAGGCGATGTTCCGGTTCATGTCCAAGAACGCCGCCGTCGTATTATTCGCTGATCCCGA GGCGGCTGCGGCCGTACGTGACGGTGTCGTCGGCGGCGTCGGCGTGCAGCACGGACGTGG CGGCGGCGGCGAGCGGCGAGCACTCGTGGAACGACACGCTCGTCGTCCCCGTGGGCGCGG AGTTCCTCGAGAGCCGCGGCGGCGGCGGCGTGCACGTGGCGGTGTACTCGGAGCCGGCGT GCCGGCTCGTCGGCGGCGCCACGCCGCTGGGGTGGTGCAGGATCCCCGCCGCCGACGTGC TCGACGGCCTCCGCCCGCCGCGCGCGCTCCGCCGGCTCAGCTACTCCCTCCGCTGCCCGC GCACCGGCGGCCCCGCCCGCGGCGTCGTGCACCTCGCCGTCCGCGTCCTCGGCGACCTCG TCCCGCCGCCTCCGCCGCAGCATGCCCCGTCGACGCCGCCGGCGCAGCCAGGGTGGTGCC GCGTGGCGATGGGCATCCCGGTGTCGGGGACATCCGCCGCCGTGGTGGGGATGCCGGCGT GGGCGGCGTGGGGCGGCGAGGCGGCGGCGTCGCGGTGATCGATCGCGACGCGGCGAGGCA ACGAGAGAGACTACCCGTGGAAAAACGGTGGAAAAATTCATCGCCGGGTCGGACTTATTT TTATTTATTTTTTGTTCTGATCGAGACGTTGACTAACCCGGTAATGGGTTGGTCAAACGT CTCGTCGGCTCGTCGCGTTGTTCTGCGTGTGTACGTATATACGTACGTACATGCCCGGAA GCTTCCTCTCGCAGCTATACGTATGTACATACAACCCACGTACGTATAGTATCAATCATA AGTGGCTGTACTCGGATTGGTGGTGTATATGTGACTGAACTGTGGGACCAGGGGGTTGCA GGGGTTTTGTAATTGTAACTGTATAAATGATTGCTACCACTTGATTGTGAGATGAATTGA TAAGAGAAACCCTAAGTCGAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)