These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 901 fasta sequence [CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG-CAGC-GGGCGG-CATGGGTT--CGTGG-TGGCGATCA-CGGGGGTGGAGGATGT-CGGC-AAGGGGCT-CATCA-GGGAGGG-CAC-GGGCTACGTCACCTT-CCCGGTCAAGTA-CCAGTGCGTCGTC-TTCCGCCCCTT-CAAGGGCGAGATCCTGGAGGCCGTCGTCA-CCATGGTCAACAAGAT-GGGGTTCTTCGCGGA-GGC-TGGGCCTGTGCAGATCTTCGTGTCCAACCA-TTTGATTCCTGATGATATGGAGTTCCAAT-CTGGGGATGTGCCA-AATTATACTACTTCTGATGGATCGGTGAAAATTCAG-AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG-TTGATGCAAC-AGAAA--TTTTTTGCATTGGCACAAT-AAAAGATGACTTCC--TGGGCG-TTAT-C-AG-TGAT-CCTGGTGCGGCAGTGT-AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG-TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAAGCACTGTATCCTTGCAATTAAACATT] [+] EMBL CF277760 [CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGANA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAt ] [+] EMBL AK072739 [ TGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAATTTTGCACTGTATCCTTGCAATTAAACATT] [+] EMBL CF296716 [ TGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGG ] [+] EMBL AK103913 [ GAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGCCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCGAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTCTCAAGCAGTCATTTAACTAATCAAGCTC ] [-] EMBL CB669758 [ GGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGAC ] [+] EMBL OSS2823A [ AATCGCTCGCTCGCTCGCTCGCTCGCCGGCGG GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCANCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGATGGGGGTTCTTCGCGGAGGGCTTGGGCCTtt ] [+] EMBL OSS3407A [ AATCGCTCGCTCGCTCGCTCGCTCGCCGGC GNGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGN CATGGGTT CGTGG TGGCGATCA CGNGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGNCCCTT CAAGGGCGAGATCCTGGAGGNCGTCGTCA CCATGGTCAACAAGAT AGGGTTCTTCGCGAA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAG ] [+] EMBL OSS2782A [ AATCGCTCGCTCGCTCGCTCGCTCGCCGGCGG GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTCTTTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA ACATGGTCAACA ] [+] EMBL AU066105 [ AATCGCTCGCTCGCTCGCTCGCTCGCCGGCGG GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AANGGGCT CATCA NGGAGGG CAC GGGCTACGTTACCTT CCCGGTCAAGTA CCAGTGCG ] [+] EMBL CB669757 [ TCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTTCACTTTCAAGCAGTCA ] [+] EMBL AU086049 [ ACCTGCCACCGGGGCGGNCATGGGTTTCCNTGGTTGGCGATCACCGGGGTTGGAGGATGTCCGGCAAAGGGGCTCCATCAGGGGAGGGCCACGGGGCTACTTCACCTTCCCCGGTCAAGTACCCAGTGCGTCGTC TTCCGCCCCTTCCAAGGGCGAGATCCTGGAGNCCGTCGTCACCCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGCCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAATCCTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAGAAAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCaaaaaaa ] [+] EMBL BI809810 [ AAGTA CCAGTGCGTCGTC TTCCG CCCTT CAAGGGCGAGATCCTGGA GCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GC TGGGCCTGTCCAGATCTTCGTGTCCAACCACTTTGATTCCGGATGATATGGAGTTCCAAT CTGGGGATGTGCCACAATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTGTTTGATGCAACAAGAAATTTTTTTTGCATTGGCACAATAAAAAGATGACTTCC TGGGCG TTAT CAAG TGAT CCTGGTGCCGCAGTGTAAAATTATCCGGTGACAAGATTACGTCTCTTCATGCTCTTGAACGGGAATATTCTGATGAATTGTAGTGTTAAAATATGGAATCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGACGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTTGTGGGATTCAACTTTCAAGCAGTCATTTAACCAATCAAACTCTGACCTTTTTACGGACTGTAAAAAAA ] [-] EMBL CF277759 [ GTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAaaaaaa ] [+] EMBL AU174372 [ TGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAA ] [-] EMBL CF296717 [ AGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA TTTTTTGCATTGGCACAAT AAAAGATGACTTCC TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACaaaaaa ] [+] EMBL AU174424 [ ccnCGGG TT AAGCACC A AAA TTTTTTGCATTGGCCCAAT AAAAGATG CTTNC TGGGGG TTAT C AG TGAT CCTGGTGCGNCAGTGT AAATTATCCGGTGACAAGATTACGCCTTTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAA ] [+] EMBL AU097206 [ cntTTCCNTTGGGCGTTTATCC AGTTGATCCCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCaaaaa ] consensusID : consensus_15381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence [TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACCTTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNCTTGGAGGCCGTCGTCAACA-TGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTTTCAAGATCTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTTGGGGATTTNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAAG] [+] EMBL AU066343 [TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACCTTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNCTTGGAGGCCGTCGTCAACA TGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTTTCAAGATCTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTTGGGGATTTNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAAG] [+] EMBL AU066236 [TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACCTTCCCGGTCAAGTACCAGTGCGTCGTC TTCCGCCCCTTCAAGGGCGAGATNC TGGAGGCCGTCGTCAACATTGGTCAACAAGATNGGGTTTTTC ] consensusID : consensus_15381#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA] [+] EMBL CF315408 [AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA] consensusID : consensus_15381#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 91 fasta sequence [AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGTCCGTAAAAAGGTCAGAGTTTGATTGGTTAAAAAAAAAAAAAAAA] [+] EMBL CA766519 [AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGTCCGTAAAAAGGTCAGAGTTTGATTGGTTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGC 60 consensus_15381#1 ----------------------------------------------------TCGCTCGC 8 consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 TCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTG 120 consensus_15381#1 TCGCTCGCTCGCCGGCGG-GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTG 67 consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 GAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTC 180 consensus_15381#1 GAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTN 127 consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 TCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCG 240 consensus_15381#1 TCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCG 187 consensus_15381#2 ------------AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAG 48 consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 ATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACC 300 consensus_15381#1 ATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACC 247 consensus_15381#2 GGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTG 108 consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 TTCCCGGTCAAGTACCAGTGCGTCGTCTT-CCGCCCCTTCAAGGGCGAGATCCT-GGAGG 358 consensus_15381#1 TTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNCTTGGAGG 307 consensus_15381#2 GCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAA 168 consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 CCGTCGTCACCATGGTCAACAAGATGGGGTTCTTCGCGGAGGCT-GGGCCTGTGCA-GAT 416 consensus_15381#1 CCGTCGTCAACATGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTTTCAAGAT 367 consensus_15381#2 CTCTGACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 228 consensus_15381#3 -------------AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGT 47 consensus_15381#0 CTTC--GTGTCCAACCATTTGA--TTCCTGA-TGATATGGAG-TTCCAATCT-GGGGATG 469 consensus_15381#1 CTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTTGGGGATT 427 * * * ** * consensus_15381#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA------------ 276 consensus_15381#3 CCGTAAAAAGGTCAGAGTTTGATTGGTTAAAAAAAAAAAAAAAA---------------- 91 consensus_15381#0 TGCCAAATTATACTACTTCTGA-TGGATCGGTGAAAATTCAGAAAGATAGTGAGGTTCGG 528 consensus_15381#1 TNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAAG------ 481 *** * *** * ** consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 TTGAAGATTATTGGGACACGTGTTGATGCAACAGAAATTTTTTGCATTGGCACAATAAAA 588 consensus_15381#1 ------------------------------------------------------------ consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 GATGACTTCCTGGGCGTTATCAGTGATCCTGGTGCGGCAGTGTAAATTATCCGGTGACAA 648 consensus_15381#1 ------------------------------------------------------------ consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 GATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATAT 708 consensus_15381#1 ------------------------------------------------------------ consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 GGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAAT 768 consensus_15381#1 ------------------------------------------------------------ consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 GGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAG 828 consensus_15381#1 ------------------------------------------------------------ consensus_15381#2 ------------------------------------------------------------ consensus_15381#3 ------------------------------------------------------------ consensus_15381#0 TCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAAGCACTGTATCCTT 888 consensus_15381#1 ------------------------------------------------------------ consensus_15381#2 ------------- consensus_15381#3 ------------- consensus_15381#0 GCAATTAAACATT 901 consensus_15381#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||