cluster # 15382

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Oryza sativa
cluster # 15382 cluster # 15382 Sequences # 21 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15382#0 length = 595 sequences # 9
consensus_15382#1 length = 581 sequences # 8

consensus_15382#2 length = 572 sequences # 3
consensus_15382#3 length = 432 sequences # 1

consensusID : consensus_15382#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 595
fasta sequence

                              [CAAACCCCAGAACGACACTTCCG-CACAGCCCTAGGGTTTCTGTTCAGCGA-CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT-CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC-TACGGCTTCAT-CCCGCTCATCATCGT-CGTCGGCATGAGATCCGAGCCGA-GGCCCTCCCTCGCCCAGCTCCTC-AGCCCGGTCTGATCT-GACGATCGCCTTCAAGCCCTAGATGCGATCGATC-TGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAATTTTCTGTGTTA-----AAAAAAAAA]

[+] EMBL AK122071             [CAAACCCCAGAACGACACTTCCG CACAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC TACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGA GGCCCTCCCTCGCCCAGCTCCTC AGCCCGGTCTGATCT GACGATCGCCTTCAAGCCCTAGATGCGATCGATC TGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTA                                       ]
[+] EMBL AU160887             [                  TTCCGCCACAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCG ATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTNCGCTGAAGCCGAANCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTNCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC TACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGA GGCCCTCCCTCGCCCAGCTCCTC AGCCCGGTCTGATCT GACGATCGCCTTCAAGCCCTAGATGCGATCGATC TGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAATTTTCTGTGTTA     AAAAAAAAA]
[+] EMBL OSC18921             [                  TTCCG CACAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGNGTCGCGGCCGT CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGNCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTNAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC TACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGACGGCCCTNCCTNGNCCAGCTACTCAAGCCCGGTCTGATCTNAACGATCGCCTTtnaa                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC21431             [                  TTCCG CACAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGNTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAGGACCAAGGTGGCGGCGCAN TACGGCTTNAT CCCGNTCATCATCGN CGTNGGCATGAG                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OS1070A              [                   TCCG CACAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT AGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC TACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGA GGCCCTCCCTNGCCCAGCTNCTC AGCCCGGTCTGATCT GACGATCGNCTTCAAGNCCTAGATGCGATCGATCTTNNCNCAATTNACTACCGNTTTAGTAGTNACTT                                                                                                                                                                                                               ]
[+] EMBL C74728               [                      G CACAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTNCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACNNACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGA NGCCCTCCCTCGGCCAGCTCCTC ANCCCGGTCTGATAN AACGAT GGCTTNAAGCCCTAGATGCGATCGATCNTG  CCCCTTTAanaacgg                                                                                                                                                                                                                             ]
[+] EMBL AU070798             [                          CAGCCCTAGGGTTTCTGTTCAGCGA CCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC TACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGA GGCCCTCCCTCGCCCAGCTCCTC AGCCCGGTCTGATCT GACGATCGCCTTCAAGCCCTAGATGCGATCGATC TGCCCCCCTTTtac                                                                                                                                                                                                                                  ]
[-] EMBL CF278919             [                                      TTCTGTTCAGCGACCCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGT CGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCAC TACGGCTTCAT CCCGCTCATCATCGT CGTCGGCATGAGATCCGAGCCGA GGCCCTCCCTCGCCCAGCTCCTC AGCCCGGTCTGATCT GACGATCGCCTTCAAGCCCTAGATGCGATCGATC TGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAATTTTCTGTGTTAtttgtataaaaaa ]
[+] EMBL AU108880             [                                                                                                                                                                                                                                             CGCAC TACGGCTTCATCCCCGCTCATCATCGTACGTCGGCATGAGANCCGAGCCGA GGCCCTCCNTCGCCCAGCTCCTC AGCCCGGTCTGATCT GACGATCGCCTTCAAGCCCTAGATGCGATCGATC TGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAATTTTCTGTGTTATTTGTAAAAAAAAA]




>consensus_15382#0
CAAACCCCAGAACGACACTTCCGCACAGCCCTAGGGTTTCTGTTCAGCGACCCCCCGAAT
CGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCA
AGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGG
TGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACT
ACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCG
CCCAGCTCCTCAGCCCGGTCTGATCTGACGATCGCCTTCAAGCCCTAGATGCGATCGATC
TGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGC
CTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAA
TGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGA
TCTGCTATTAATACTTCGGTATGGTATGGAGAAATTTTCTGTGTTAAAAAAAAAA

consensusID : consensus_15382#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 581
fasta sequence

                              [TTCCGCACAGCCCTAGGGTTTCTNTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT-CCCCGGCGGCCGACGAGGAGCAGT-CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCG-CCTTCAAGCCCTAGATGC-GA-TCGA-TC-TGCCCC-CCTTTAC-TACCGCTTTAGT-AGTGACTTTAGT-AATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSC122214            [TTCCGCACAGCCCTAGGGTTTCTNTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT CCCCGGCGGCCGACGAGGAGCAGT CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGNCCAGCTCCTCAGCCCGGTCTGATCTGAC                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU093197             [  CCGCACAGCCCTAGGGTTTCTGTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT CCCCGGCGGCCGACGAGGAGCAGT CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCG CCTTCAAGCCCTAGATGC GA TCGA TC TGCCCC CCTTTAC TACCGCTTTAGT AGTGACTTTAGT AATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAAAAAAAAAAAA               ]
[+] EMBL C27537               [  CCGCACAGCCCTAGGGTTTCTNTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT CCCCGGCGGCCGACGAGGAGCAGT CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCG CCTTCAAGCCCTAGATGC GATTCGATTC TGCCCC CCTTTACTTACCGCTTTAGT AGTNACTTTAGT AATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGAT                                                                                                                                                                   ]
[+] EMBL AU062940             [   CGCACAGCCCTAGGGTTTCTNTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT CCCCGGCGGCCGACGAGGAGCAGT CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGGCCAGCTCCTCAGCCCGGTCTGATCTGACGATCG CCTTCAAGCCCTAGATGCNGA TCGA TC TTCCCCNCTTTTAC TACCGNTTTAGTAAGTAATTTAAGTAAATAGTTCTTTC                                                                                                                                                                                              ]
[+] EMBL OSC098120            [   CGCACAGCCCTAGGGTTTCTNTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT CCCCGGCGGCCGACGAGGAGCAGT CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTTGCCCAGCTTCTCAGCCCGGTCTGATCTNACGATCGNCTTTCAAG CCTAGATGC GA TCGA TCTTNCCCC CTTTTAC TANCGTTTTAGT AGTNACTTTAGT AATAGT                                                                                                                                                                                                    ]
[+] EMBL AU092004             [        caCCCTTAGGNTTCTTTTCANGGCCCCCCCGAATCG ATCAAGAGGAAGGTGCCATGGCGTCGCGCCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGCCNCGAGGAAGGGATCCCCCGGCGGCCGACGAGGAGCAGTCCCACGGCTTCGGCGGCGGTNCGGTTCGTCAAGGAGTGGACCACNTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCG CCTTCAAGCCCTAGATGC GA TCGA TC TGCCCC CCTTTAC TACCGCTTTAGT AGTGACTTTAGT AATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C74284               [                                            AATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT CCCCGGCGGCCGACGAGGAGCAGT CCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGG TTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGG CCT CCTCG CCA NTCCTCAG CCGGTCTGATCTTACGATCG  CTTCAA                                                                                                                                                                                                                                                                          ]
[+] EMBL AU183193             [                                                                                                                                                                                                                                                                                     TCCCTCGCCCAGCTCCTCAGGCCGGTTTGATTTNACGATCG CCTTCAAGCCCTAAATGC GA TCGA TN TGCCCC CCTTTAC TACCGCTTTAGT AGTGACTTTAGT AANAGTTCTTTNTTAGATCGTGCCTTNTGANCAGTTNATGCTNCTGTGCGGATTTAAAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCNTGCTATTATTGTGCGGGTCATGGATCTGCTATTAANACTTCGGTATGGNATGGAGAAAAAAAAAAAAAAAAAAAAAAAAAA  ]




>consensus_15382#1
TTCCGCACAGCCCTAGGGTTTCTNTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTG
CCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGAT
CCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGT
GGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCA
TCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGG
TCTGATCTGACGATCGCCTTCAAGCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCG
CTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGC
TGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGC
TTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCG
GTATGGTATGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15382#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 572
fasta sequence

                              [GGAGTAGAAAATCAAACCCCAGAACGACACTTCCGCACAGCCCTAGGGTTTCTGTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACTTTGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGNGTACCTCGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCGCCTTCAAGCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGT]

[+] EMBL CF278920             [GGAGTAGAAAATCAAACCCCAGAACGACACTTCCGCACAGCCCTAGGGTTTCTGTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACTTTGAGCAGTCCACGGCTGCGGCGGCGGTGCGGTTCGTCAAGGAGNGTACCTCGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCGCCTTCAAGCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGT]
[+] EMBL CF330644             [                                                                                                                                                                                                                                                                                           CATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCGCCTTCAAGCCCTAGATGCGATCGATCTGCCCCCCT                                                                                                                                                                                               ]
[+] EMBL OSC122216            [                                                                                                                                                                                                                                                                                                 anCCGAGCCGAGGCCCTCCCTCGCCNAGCTCCTCAGCCCGGTCTGANCTNACGATCGCCNTNAAGCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGNGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAAaaaaaa                                          ]




>consensus_15382#2
GGAGTAGAAAATCAAACCCCAGAACGACACTTCCGCACAGCCCTAGGGTTTCTGTTCAGC
GACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGA
AGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACTTTGAGCAGTCCACGG
CTGCGGCGGCGGTGCGGTTCGTCAAGGAGNGTACCTCGTGGACCATGAAGAAGACCAAGG
TGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGATCCGAGCCGA
GGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCGCCTTCAAGCCCTAG
ATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTT
CTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATA
TGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGT
GCGGGTCATGGATCTGCTATTAATACTTCGGT

consensusID : consensus_15382#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GGTTNCCCGGTTTCCGNTTCAAAGGAAGTGGNACCCCACCGTGGNACCCATTGGAAGGAAGGACCCAAGGTTGGCCGGCCGCAATTAACGGGCTTTNCATTCCCCGGNTCAATCAATCCGTCGTCGGGCATGAGATTCCCGAGCCGAGGCCCCCTCNCCTCGCCCAGCTCCTCAGCCCGGGTCTGATCTGACGATCGCCCTTNAAAGCCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTNATAAAAAAAAAAAAAA]

[+] EMBL C98186               [GGTTNCCCGGTTTCCGNTTCAAAGGAAGTGGNACCCCACCGTGGNACCCATTGGAAGGAAGGACCCAAGGTTGGCCGGCCGCAATTAACGGGCTTTNCATTCCCCGGNTCAATCAATCCGTCGTCGGGCATGAGATTCCCGAGCCGAGGCCCCCTCNCCTCGCCCAGCTCCTCAGCCCGGGTCTGATCTGACGATCGCCCTTNAAAGCCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTNATAAAAAAAAAAAAAA]




>consensus_15382#3
GGTTNCCCGGTTTCCGNTTCAAAGGAAGTGGNACCCCACCGTGGNACCCATTGGAAGGAA
GGACCCAAGGTTGGCCGGCCGCAATTAACGGGCTTTNCATTCCCCGGNTCAATCAATCCG
TCGTCGGGCATGAGATTCCCGAGCCGAGGCCCCCTCNCCTCGCCCAGCTCCTCAGCCCGG
GTCTGATCTGACGATCGCCCTTNAAAGCCCCTAGATGCGATCGATCTGCCCCCCTTTACT
ACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTG
ATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGG
ATGCTTCTTTGGATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTNATAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15382#0      ------------CAAACCCCAGAACGACACTTCCGCACAGCCCTAGGGTTTCTGTTCAGC 48
consensus_15382#1      ------------------------------TTCCGCACAGCCCTAGGGTTTCTNTTCAGC 30
consensus_15382#2      GGAGTAGAAAATCAAACCCCAGAACGACACTTCCGCACAGCCCTAGGGTTTCTGTTCAGC 60
consensus_15382#3      ------------------------------------------------------------
                                                                                   

consensus_15382#0      GACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGA 108
consensus_15382#1      GACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGA 90
consensus_15382#2      GACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCCGA 120
consensus_15382#3      ------------------------------------------------------------
                                                                                   

consensus_15382#0      AGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGG 168
consensus_15382#1      AGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGG 150
consensus_15382#2      AGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACTTTGAGCAGTCCACGG 180
consensus_15382#3      --------------------------GGTTNCCCGGTTTCCGNTTCAAAGGAAGTGGNAC 34
                                                 ** * *****   ***      ** *        

consensus_15382#0      CTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGG 228
consensus_15382#1      CTGCGGCGGCGGTGCGGTTCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGG 210
consensus_15382#2      CTGCGGCGGCGGTGCGGTTCGTCAAGGAGNGTACCTCGTGGACCATGAAGAAGACCAAGG 240
consensus_15382#3      C--CCACCGTGGNACCCATTGGAAGGAAGGACCCAAGGTTGGCCG-GCCGCAATTAACGG 91
                       *  *  * * **  *   * *  * * **    *   ** * **  *  * *    * **

consensus_15382#0      TGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGAT--CCGAGCC 286
consensus_15382#1      TGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGAT--CCGAGCC 268
consensus_15382#2      TGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTCGTCGGCATGAGAT--CCGAGCC 298
consensus_15382#3      GCTTTNCATTCCCCGGNT-CAATCAATCCGTCGTCG-----GGCATGAGATTCCCGAGCC 145
                             *   *  *** * **  *    * ** ***     **********  *******

consensus_15382#0      GAGGCCCTC---CCTCGCCCAGCTCCTCAGCCCGG-TCTGATCTGACGATCGCCTTCAAG 342
consensus_15382#1      GAGGCCCTC---CCTCGCCCAGCTCCTCAGCCCGG-TCTGATCTGACGATCGCCTTCAAG 324
consensus_15382#2      GAGGCCCTC---CCTCGCCCAGCTCCTCAGCCCGG-TCTGATCTGACGATCGCCTTCAAG 354
consensus_15382#3      GAGGCCCCCTCNCCTCGCCCAGCTCCTCAGCCCGGGTCTGATCTGACGATCGCCCTTNAA 205
                       ******* *   *********************** ****************** *  * 

consensus_15382#0      ---CCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAA 399
consensus_15382#1      ---CCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAA 381
consensus_15382#2      ---CCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAA 411
consensus_15382#3      AGCCCCTAGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAA 265
                          *********************************************************

consensus_15382#0      TAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTT 459
consensus_15382#1      TAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTT 441
consensus_15382#2      TAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTT 471
consensus_15382#3      TAGTTCTTTCTTAGATCGTGCCTTCTGAGCAGTTGATGCTGCTGTGCGGATTTAGAGGTT 325
                       ************************************************************

consensus_15382#0      TTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGC 519
consensus_15382#1      TTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGC 501
consensus_15382#2      TTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGC 531
consensus_15382#3      TTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGGATTAAACTCTTGC 385
                       ************************************************************

consensus_15382#0      TATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAATTTTC 579
consensus_15382#1      TATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGTATGGTATGGAGAAAAAAAA 561
consensus_15382#2      TATTATTGTGCGGGTCATGGATCTGCTATTAATACTTCGGT------------------- 572
consensus_15382#3      TATTATTGTGCGGGTCATGGATCTGCTATTNATAAAAAAAAAAAAAA------------- 432
                       ****************************** ***                          

consensus_15382#0      TGTGTTAAAAAAAAAA---- 595
consensus_15382#1      AAAAAAAAAAAAAAAAAAAA 581
consensus_15382#2      --------------------
consensus_15382#3      --------------------