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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 648 fasta sequence
[TCTCACCCAACCCCAACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGATCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCGGCTTTCTGCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAATGGTGATCATCCAC]
[+] EMBL AK063224 [TCTCACCCAACCCCAACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGATCTCC ]
[+] EMBL C74244 [ CAACTCTACACGCACGCGGCGACA NGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTNAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTTGGACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCT ]
[+] EMBL CA998458 [ CGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGATCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCGGCTTTCTGCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAATGGTGATCATCCAC]
consensusID : consensus_15386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence
[CACCCGCACCCGCACCCGCACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTNAAGTCCAT-CA-GGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAG-AATAT-GTCAATGGTCAG-CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC---AAAAAAAC-TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATATATTGAAGTGTCCTCATTCTTTGTGAACCCAAAA]
[+] EMBL AK058487 [CACCCGCACCCGCACCCGCACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCAT CA GGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAG AATAT GTCAATGGTCAG CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATATCTTG ]
[+] EMBL AU029328 [ GGCCGTTGAAGACGCCCTCCGACTTCCTNAAGCCCAT CA GGGGGCGCCCCNTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAG AATAT GTCAATGGTCAG CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAaaaaaaa ]
[+] EMBL BI795415 [ gAAGTCCATCCAGGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACC C GTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAATATGGTCAATGGTCAG CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC ATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGCGCATGAGAGGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATATCCTGTGCGGTC ATCT TAAAGAAATACTGTCTTACAATCTCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCCA AAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTTGATGTATGTGGTGATTATTGTACCGTCAGGGATATGGATAAGATTTATATATTGGGGTGTCCTCATTCTTTGTGAACCCAAAA]
[+] EMBL BI798990 [ TGGTCAGCCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATC AAGCGTACCCTCACTGATGGCGCATGAGAGGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATATCCTGTGCGGTC ATCTCTAAAGAAATACTGTCTTACAATCTCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCCCAAAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTTGATGTATGTGGTGATTATTGTACCGTCAGGGATATGGATAAGATTTATATAaaaaaa ]
consensusID : consensus_15386#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 573 fasta sequence
[CCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT-ATGTCAATGGTCAGCTGAAGAACAA-GTACGG-TG-ACGC-TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC---AAAAAAAC-TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT-GATGTATGTGGT-GATTATTGGACCGTCAGGGATAT-GGATAAGATTTATATCTTGGGGTGTCCTCAAAAAAAAAAAA]
[+] EMBL CA755411 [CCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGATAAGATTTATATCTTGGGGTGTCCTCAAAAAAAAAAAA]
[-] EMBL CB965750 [ agtcCGGCTCGGGCGNCGNCGTCGCCGGGCCGGTGAAGACACCGTCCGACTTCCTTAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGCGCATGAGAGGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATGTCCTGTGCGGTCAATCTCTAAAGAAATACTGTCTTACAATCTCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCCA AAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGATAAGATTTATATCTTGG ]
[-] EMBL BE229328 [ GAATTCTTCAAGTCCATCAGGGGGCGCCCCGTTGTNGTCAAGTTCAATTCCGGCGTNGACTACCNCGGTATTNTGGCTTGTCTGGATGGTNACATGAACATTGCAATGGAGCAAACGGAAGAATAATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTNACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACC ]
[-] EMBL BE229324 [ TCATCAAGTCCATCAGGGGGCG CCCGTTGTCGTCAAGNTCAANTCCGGGGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGNTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTNTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACC ]
[+] EMBL AU057854 [ CTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGGATGTATGTGGTGGATTATTGGACCGTCA GGATATGGGATAAGATTTA ]
[+] EMBL CB669872 [ AGAACAAGGTACGGCTGTACGCATTTCATACGAGGAAACAATGTTTTATACATCAGCACATCGAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGATCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAATAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGA ]
[+] EMBL CA766958 [ GATTATCACCAGATATTTGTACCCCAAAAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGATAAGATTTATATC ]
consensusID : consensus_15386#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 569 fasta sequence
[CGAGGAGAAGTCCGNNHTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAWTGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTBGTGATTATTGGACCGTCA-GGATATGGATAAGATTTATA---AAAAAAAAAAAA]
[+] EMBL BE229361 [CGAGGAGAAGTCCGNNHTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAWTGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTBGTGATTATTGGACCGTCA GGATATGGATAAGATTTATA AAAAAAAAAA ]
[+] EMBL AT003460 [ GGCGCCGGTGGCGGCGNCGGC GGGCGGTGAANACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATATCTAAAAAAAAAAAA]
[-] EMBL CA882799 [ ATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCA ]
consensusID : consensus_15386#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[AACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAAAAAAAAAAAAAAA]
[+] EMBL AU162263 [AACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAAAAAAAAAAAAAAA]
consensusID : consensus_15386#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 500 fasta sequence
[CCCGCACAAACGCAGCGCAAGATGNGCAGTGGCGNCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGTTGCTACATGGAAAGAGATG-TTTTCT-GGAAT-GGAGGATTATCACCAGATA-TTTGTA-CCCAAAAAAACTAT-GTTCGA-TTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAAAAAG]
[+] EMBL AU165304 [CCCGCACAAACGCAGCGCAAGATGNGCAGTGGCGNCGAGAAGTCCGGCTCGGGCGGCGGCGGCGNTGNCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCTTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGTTGCTACATGGAAAGAGATG TTTTCT GGAAT GGAGGATTATCACCAGATA TTTGTA CCCAAAAAAACTAT GTTCGA TTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAAAAA ]
[+] EMBL AU165303 [ ACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTTATGGTGCATNAGAAGTTGCTACATGGAAAGAGATGTTTTTCTGGGAATGGGAGGATTATCACCAGATATTTTGTANCCCAAAAAAACTATNGTTCGATTTTTAGTAGgntt ]
[+] EMBL AK122107 [ GGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGTTGCTACATGGAAAGAGATG TTTTCT GGAAT GGAGGATTATCACCAGATA TTTGTA CCCAAAAAAACTAT GTTCGA TTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAtcttg]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15386#2 ----------------------------------------------------------CC 2
consensus_15386#3 ----------------------------------------------CGAGGAGAAGTCCG 14
consensus_15386#1 CACCCGCACCCGCACCCGCACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCC- 59
consensus_15386#5 --------------CCCGCACAAACGCAGCGCAAGATGNGCAGTGGCGNCGAGAAGTCC- 45
consensus_15386#0 -----------TCTCACCCAACCCCAACTCTACACGCACGCGGCGACAGCGAGAGAGATG 49
consensus_15386#4 -------------------------AACTCTACACGCACGCGGCGACAGCGAGAGAGATG 35
consensus_15386#2 GGCTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 53
consensus_15386#3 NNHTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 65
consensus_15386#1 GGCTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 110
consensus_15386#5 GGCTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 96
consensus_15386#0 AGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCC 109
consensus_15386#4 AGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCC 95
* ********** *** *********** ******************
consensus_15386#2 TCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 113
consensus_15386#3 TCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 125
consensus_15386#1 TCCGACTTCCTNAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 170
consensus_15386#5 TCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 156
consensus_15386#0 TCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 169
consensus_15386#4 TCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 155
** ******** ***** ******** *********************************
consensus_15386#2 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 173
consensus_15386#3 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 185
consensus_15386#1 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 230
consensus_15386#5 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 216
consensus_15386#0 GACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACG 229
consensus_15386#4 GACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACG 215
******** ************** ** ***** ** ************************
consensus_15386#2 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 233
consensus_15386#3 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 245
consensus_15386#1 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 290
consensus_15386#5 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 276
consensus_15386#0 GAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAAC 289
consensus_15386#4 GAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAAC 275
***** ***** ***** ** ** *********** ***** ** ****** **** ***
consensus_15386#2 AATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAGGTGA 292
consensus_15386#3 AWTGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAGGTGA 304
consensus_15386#1 AATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAGGTGA 349
consensus_15386#5 AATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAG---- 331
consensus_15386#0 AATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGG 349
consensus_15386#4 AATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGG 335
* **** ************* ** *** * ***** ** **** **** **
consensus_15386#2 GACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCT 352
consensus_15386#3 GACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCT 364
consensus_15386#1 GACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCT 409
consensus_15386#5 ------------------------------------------------------------
consensus_15386#0 AACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGT--TGTGATCTCTCT 407
consensus_15386#4 AACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGT--TGTGATCTCTCT 393
consensus_15386#2 CTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAA 412
consensus_15386#3 CTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAA 424
consensus_15386#1 CTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAA 469
consensus_15386#5 ------------------------------TTGCTACATGGAAAGAGATGTTTTCTGGAA 361
consensus_15386#0 CT---GACCCATGCTCGTAC----CTGCTGTTTTGAGGTGGGAAAA--TGTATTGCATAT 458
consensus_15386#4 CT---GACCCATGCTCGTAC----CTGCTGTTTTGAGGTGGGAAAA--TGTATTGCATAT 444
** * *** ** * *** ** *
consensus_15386#2 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 470
consensus_15386#3 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 482
consensus_15386#1 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 527
consensus_15386#5 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 419
consensus_15386#0 TGCTAGAC--TTATCAGAAACTTCT--TTAATGTAACTGTATCAGCTTTGCAAAGAACTT 514
consensus_15386#4 TGCTAGAC--TTATCAGAAACTTCT--TTAATGTAACTGTATCAGCTTTGCAAAGAACTT 500
** ** * * **** * ** * ** **** * * * *** *** **
consensus_15386#2 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TGGTGATTATTGGACCGTCAGGGA 529
consensus_15386#3 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TBGTGATTATTGGACCGTCAGG-A 540
consensus_15386#1 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TGGTGATTATTGGACCGTCAGGGA 586
consensus_15386#5 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TGGTGATTATTGGACCGTCAGGGA 478
consensus_15386#0 CCGGCCAAGATCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCGGCTTTCT 574
consensus_15386#4 CCGGCCAAAAAAAAAAAAAAAA-------------------------------------- 522
* * *
consensus_15386#2 TATGGATAAGATTTATATCTTGGGGTGTCCTCAAAAAAAAAAAA---------------- 573
consensus_15386#3 TATGGATAAGATTTATA---------------AAAAAAAAAAAA---------------- 569
consensus_15386#1 TATGGATAAGATTTATATATTGAAGTGTCCTCATTCTTTGTGAACCCAAAA--------- 637
consensus_15386#5 TATGGATAAGATTTATAAAAAG-------------------------------------- 500
consensus_15386#0 GCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAA 634
consensus_15386#4 ------------------------------------------------------------
consensus_15386#2 --------------
consensus_15386#3 --------------
consensus_15386#1 --------------
consensus_15386#5 --------------
consensus_15386#0 TGGTGATCATCCAC 648
consensus_15386#4 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||