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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1438 fasta sequence
[CCTCCGCAAGAAAGAAAGAAAAAGAGGGGAAGCAAAGCGCAGAGGCGGCCGTCGCAGCCGCAACACAAGTCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG-GTGAAGGCGGCGCAGCTCT-CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC-AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC-AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC-GGATTGTCGTACGATTAACTTCTAGTAAATGTTTACTTGACGCAAAAAAAAAAAAAAAA]
[+] EMBL AK103551 [CCTCCGCAAGAAAGAAAGAAAAAGAGGGGAAGCAAAGCGCAGAGGCGGCCGTCGCAGCAGCAACACAAGTCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGTTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGCGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCGTACGATTAACTTCTAGTAAATGTT ]
[+] EMBL CB624296 [ AAAGACGGGAAGCAAAGCGCAGAGGCGGCCGTCGCAGCCGCAACACAAGGCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGTTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAG ]
[+] EMBL CB624259 [ GCGGCCGNCGCAGCCGCAACACAAGGCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGTTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGC ]
[+] EMBL AK061835 [ GCAACACAAGTCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGTTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTCAAAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCGTACGATTAACTTCTAGTAAATGTT ]
[+] EMBL CB624219 [ ACACAAGGCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGAGGCCGCGANAGGCTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAG ]
[+] EMBL CB624217 [ CACAAGGCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGAGGCCGCGATAGGATTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCANAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAA ]
[+] EMBL OSR27841A [ GTCAGGGGAGGAGAGAGAGGCCGNGNCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGNAGGAGGGCGACGAGTAGGAGGCGGCGGNGGCGGAGATGGACGTA GTGAAGGCGGCGCA NTCTACGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCACTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGNGACACCCGCAAAGCGCG ]
[+] EMBL OSR27861A [ GTCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTNTGGCCGCGTTAGGGTTTCTTNGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGNCGCA NTCT CGGGGCGGACGCTNGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCACCCGCGACACCCGN AANCNCGTCNTCGGCGTNCTCCTC ]
[+] EMBL AK104076 [ GGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTG GTGAAGGCGGCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGTTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC ]
[+] EMBL CB680814 [ CCGCCGCAGATCTGTGGCCGCGTTATGGTTTCTTCGCCGGAATCGAGCGATGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTACGAGGCGGCGGCGGCGGAGATGGACGTGAGTGAAGGCGTCGCAGCTCT CGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCACCATCGTCTACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCTATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCCATCATAATTACCACGAATCTATGTTTTCCATGTTCAAGAGGATCAACGCCTAGGAGCATGTTGTTGGCTGGTACAGCTCCGGTCCGAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTACGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCACAAATAGCTGCC ]
[+] EMBL CA757368 [ GACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGC AAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGA ]
[-] EMBL CB624297 [ AGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCGTACGATTAACTTCTAGTAAATGTTT ]
[-] EMBL CB624220 [ GAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCATGCGATTAACTTCTAGTAAATGTTTACTTGACGC ]
[-] EMBL CB624260 [ GAGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCGTGCGATTAACTTCTAGTAAATGTTTACTTGACGC ]
[-] EMBL CB624218 [ AGAATGCTACTC AAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCGTACGATTAACTTCTAGTAAATGTTTACTTGACGC ]
[+] EMBL C28347 [ ATGTTGGTCATATACTTGTNTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC GGATTGTCGNACGA TAACCTCTAGT AATGGTTACTTGACGNAAAA ]
[+] EMBL AU173397 [ anACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTTNAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGCGGGATTGTCGTACGATTAACTTTTAGTAAATGTTTACTTGACGCCGAAAAAAAAAAAAAA]
consensusID : consensus_15393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1333 fasta sequence
[CCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTGGTGAAGGCGGCGCA-NTCTCGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGC-TGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCNACACCCGCAAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGTTCCGTCGATGTCACCAACTCCTACGNCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTCAAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AB037150 [CCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTGGTGAAGGCGGCGCACGTCTCGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGC TGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCGACACCCGCAAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGTTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATC TGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTGATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTAAAGAGAATGCTACTCAAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTGCCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCAAAAAAAAAAAAAAA ]
[+] EMBL OSS13278A [CCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTGGTGAAGGCGGCGCA NTCTCGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGT C TGCTCAGCATCGTCGACCACTACAACCGCNTCGCCCGCNACACCCGCAAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCGCGGTTCCGTCGATGTCACCAACTCCTACGNCGTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTTGGTTCCTCGATCATAATTACCACGGATCGATGTTTTNCATGTTCAAGAGGATCAACGNCAAGGAGCATGTTGTTTGTTGGTACAaaac ]
[+] EMBL OSS12653A [CCGCGCCGCCGCAGATCTGTGGCCGCGTTAGGGTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGACGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTGGTGAAGGCGGCGCA NTCTCGGGGCGGACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTNCTTGCTCAGCATCGTCGACCACTACAACCGCGTCGCCCGCNACACCCGCAAGCNCGTCGTCGGCGTGCTCCTCGGCANCTCCTCCCGCGGTTCCGTCGATGTCACCAACTTCTACGNCGTNCCGTTTTAAGAGGATNACAAGGATNCNAGGATCTTGGTTNCTCGATCATAATTACCACGAAT ]
[+] EMBL AU032633 [ CATATACTTGTCTTCTCTTANCCGGAGTGTCATCGCACTCCATAANTTGATCAATAACCAGATGCTANACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATGTGCTTTATTTGCCTTAGATTTTGGNCCCAGTGGAAGCCNAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACNCTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCTTGNGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15393#0 CCTCCGCAAGAAAGAAAGAAAAAGAGGGGAAGCAAAGCGCAGAGGCGGCCGTCGCAGCCG 60
consensus_15393#1 ------------------------------------------------------------
consensus_15393#0 CAACACAAGTCAGGGGAGGAGAGAGAGGCCGCGCCGCCGCAGATCTGTGGCCGCGTTAGG 120
consensus_15393#1 ----------------------------CCGCGCCGCCGCAGATCTGTGGCCGCGTTAGG 32
********************************
consensus_15393#0 GTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGA 180
consensus_15393#1 GTTTCTTCGCCGGAATCGAGCGAGGAAGTAGGAGGGAGAGGAGGAGGAGGAGGAGGGCGA 92
************************************************************
consensus_15393#0 CGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTGGTGAAGGCGGCGCAGCTCTCGGGGCG 240
consensus_15393#1 CGAGTAGGAGGCGGCGGCGGCGGAGATGGACGTGGTGAAGGCGGCGCAN-TCTCGGGGCG 151
************************************************ **********
consensus_15393#0 GACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAA 300
consensus_15393#1 GACGCTGGAGAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGACCACTACAA 211
************************************************************
consensus_15393#0 CCGCGTCGCCCGCGACACCCGCAAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCG 360
consensus_15393#1 CCGCGTCGCCCGCNACACCCGCAAGCGCGTCGTCGGCGTGCTCCTCGGCACCTCCTCCCG 271
************* **********************************************
consensus_15393#0 CGGCTCCGTCGATGTCACCAACTCCTACGCCGTGCCGTTTGAAGAGGATGACAAGGATCC 420
consensus_15393#1 CGGTTCCGTCGATGTCACCAACTCCTACGNCGTGCCGTTTGAAGAGGATGACAAGGATCC 331
*** ************************* ******************************
consensus_15393#0 GAGGATCT-GGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGA 479
consensus_15393#1 GAGGATCTTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGA 391
******** ***************************************************
consensus_15393#0 TCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACG 539
consensus_15393#1 TCAACGCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACG 451
************************************************************
consensus_15393#0 ACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTG 599
consensus_15393#1 ACTTGGATATACACGCACTATTCAATAACTATGTTCCTAACCCTGTCCTGGTGATTATTG 511
************************************************************
consensus_15393#0 ATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTA 659
consensus_15393#1 ATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGAGGAGGTTA 571
************************************************************
consensus_15393#0 AAGAGAATGCTACTCAAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTG 719
consensus_15393#1 AAGAGAATGCTACTCAAAAAAGTCAAAAGGTGTTTGTTCATGTTCCTTCAGAAATAGCTG 631
************************************************************
consensus_15393#0 CCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAA 779
consensus_15393#1 CCCACGAGGTTGAGGAAATCGGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAA 691
************************************************************
consensus_15393#0 TAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAA 839
consensus_15393#1 TAAGCACGCTTGCGACAGAGGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAA 751
************************************************************
consensus_15393#0 GGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATC 899
consensus_15393#1 GGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATC 811
************************************************************
consensus_15393#0 ATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACG 959
consensus_15393#1 ATGAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACG 871
************************************************************
consensus_15393#0 AGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTT 1019
consensus_15393#1 AGCTTATTAAAGCCTTTGCAGTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTT 931
************************************************************
consensus_15393#0 CTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGG 1079
consensus_15393#1 CTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAGATGCTAAACAAGG 991
************************************************************
consensus_15393#0 AGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAA 1139
consensus_15393#1 AGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAA 1051
************************************************************
consensus_15393#0 TGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTA 1199
consensus_15393#1 TGTGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTA 1111
************************************************************
consensus_15393#0 GCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTT 1259
consensus_15393#1 GCATGATGGCGTTTGAACCAATTGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTT 1171
************************************************************
consensus_15393#0 CATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCT 1319
consensus_15393#1 CATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGCTTAGGTCATACTACCTCT 1231
************************************************************
consensus_15393#0 TGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCATCATGTTTTGTGATGC 1379
consensus_15393#1 TGAGCTTTCATCTTGATCTTATATACAATGTTTCATGGGGTGCA------------AAAA 1279
******************************************** *
consensus_15393#0 GGATTGTCGTACGATTAACTTCTAGTAAATGTTTACTTGACGCAAAAAAAAAAAAAAAA 1438
consensus_15393#1 AAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1333
* * * ** * *** * * ****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||