These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 867 fasta sequence [TATTTTTAGGGCCCGGAATTTCCCCTTTTTTTGGTAAGGGAAAACAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCCTCCCCGCCCTTCTGCACTCAGCCGCCAAAAAAACAGAGGCAGACCATGCTGATCAGTTCATCATTCATAACCCAGAAATTAACCAAATAAGTTGGAGGAGATCGAGACGGCTAATTTGGTTGGTTTTCAATTTTACCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGCTCCACCAAATCAAATCATGAACCCGACTCGAACGATCAAAATTCGACATTCAAAACGTCGTCAGTCACAAACACGATCAATGATCAGGTGACCACCAACCTGTATGTAGACGCTCTCGGCGGCG] [-] EMBL CF320807 [TATTTTTAGGGCCCGGAATTTCCCCTTTTTTTGGTAAGGGAAAACAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATT ] [+] EMBL CB626747 [ TATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCCTCCCCGCCCTTCTGCACTCAGCCGCCAAAAAAACAGAGGCAGACCATGCTGATCAGTTCATCATTCATAACCCAGAAATTAACCAAATAAGTTGGAGGAGATCGAGACGGCTAATTTGGTTGGTTTTCAATTTTACCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGCTCCACCAAATCAAATCATGAACCCGACTCGAACGATCAAAATTCGACATTCAAAACGTCGTCAGTCACAAACACGATCAATGATCAGGTGACCACCAACCTGTATGTAGACGCTCTCGGCGGCG] [-] EMBL BE040439 [ ACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCACGTTGGGC ] consensusID : consensus_15397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 844 fasta sequence [TTCCCCCCTTGGAAAAAGGGGTTTTTTTTCCAAGGGTTTTTTTTTGGTTAACCCCGGGTTTTTTCCCTCCCCCCGTTTTTTAAACCCGCCCCCTGATTTTTTTAAACCCCCCCTTTAGGGGGGATTTTTTTTTTGGGCCCCGAATTTTCCCCTTTTTTTGGAAGGGGGAAACCAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA-CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA-GGTTGGGC-GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGCGGGTTGATTTTCTACTCCTTCAG] [-] EMBL CF327016 [TTCCCCCCTTGGAAAAAGGGGTTTTTTTTCCAAGGGTTTTTTTTTGGTTAACCCCGGGTTTTTTCCCTCCCCCCGTTTTTTAAACCCGCCCCCTGATTTTTTTAAACCCCCCCTTTAGGGGGGATTTTTTTTTTGGGCCCCGAATTTTCCCCTTTTTTTGGAAGGGGGAAACCAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTttctactc ] [+] EMBL CF314789 [ TTTTTTTTTTTCGAAAAAAACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGGTTGGGCAGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTG ] [-] EMBL CF314788 [ GAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA GGTTGGGC GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGCGGGTTGATTTTCTACTCCTTCAG] [-] EMBL CF317092 [ TGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA GGTTGGGC GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGC ] [-] EMBL CF316715 [ TTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA GGTTGGGC GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGC ] [-] EMBL D42802 [ tnaaCCAGCGGATCA GGTTGGNC GAGCTTNACCGTCCTTCTTAACNCCTTTGNCGGCGNNCGCCCTCTTCGCTGCATCGGCCTTGTCCNTGTCCGNCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGANCACCCTGCCGGTGCCGTCGCTGAAGTAGC CGCCACGCGCCGGCC ] consensusID : consensus_15397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 791 fasta sequence [NNNNNNNNNNNNNNNNNNNNNNAGCACTCAGAGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA-CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG-----AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC-AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC-GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC------CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTCGGCCTCGTGCCGA] [-] EMBL CA754211 [NNNNNNNNNNNNNNNNNNNNNNAGCACTCAGAGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCC ] [+] EMBL CF278738 [ tttttttttAGCACTCAGAGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCAC ] [+] EMBL CB664788 [ AGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTCGGCCTCGTGCCGA] [-] EMBL CB664787 [ GCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGAT ] [-] EMBL AK121139 [ ATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTC ] [+] EMBL CB629003 [ GTTTCAACTGAACATTCACACAAGTTCGAAAAACACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCCTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGGCCCG CTCCCTCCATCCTCCTCGCCAAAACGGCCGCCGCCCACGGCCACGCGGGTTGATGGGGCGCCACCACCCTCGCC ] [-] EMBL CF278737 [ AAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATC ] consensusID : consensus_15397#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 616 fasta sequence [GCTACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGACGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGCGCCGTCGCTGAAGTAGCGGGCCACGCCCCGGCCTCCCTCCATACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGAC] [+] EMBL CF319934 [GCTACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTcc ] [-] EMBL AU057592 [ TTTTTTTTTTTTCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCC ] [+] EMBL AU063673 [ ACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGNCCTTCTTAT ] [-] EMBL CF314784 [ TGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGATGCATCGGCCTAGTCCTTGTCCGCCTTCCTCATATCATTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGACGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGCGCCGTCGCTGAAGTAGCGGGCCACGCCCCGGCCTCCCTCCATACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGAC] consensusID : consensus_15397#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAATAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCTCCTGCCCGAAATTCCGGCACGAACTCCGTGCCCAATTCCCCTGCACCCCGGGGGAATTCCCCTAATTCCTAAAACCGGCCGCCCCCGCGGGTGGGAACNCCCCCCTTTTGTTCCCCCTTTATTGANGGGTTTATTTCCNAACCTTNGGGGTTATCCNNGGNCCAAACTGTTTCCCCCNGTTTTAAAATGGTTTCCCCNCCCCCAATCCCCCCCCAAATTTAAACCGGAAAAANNAATTTTTTAACCCCGGGGNNCCCCAAAAANTTAACNNNCCCCCTTAATGGGTTTGCCCCCNGCCCCCNTTCCCTTNGGGAACTTTTTTGCCCTCTTAAAACGCACCGGAAAGGGGNGTTTTGGCCCCCCCCCCC] [+] EMBL BE229019 [TACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAATAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCTCCTGCCCGAAATTCCGGCACGAACTCCGTGCCCAATTCCCCTGCACCCCGGGGGAATTCCCCTAATTCCTAAAACCGGCCGCCCCCGCGGGTGGGAACNCCCCCCTTTTGTTCCCCCTTTATTGANGGGTTTATTTCCNAACCTTNGGGGTTATCCNNGGNCCAAACTGTTTCCCCCNGTTTTAAAATGGTTTCCCCNCCCCCAATCCCCCCCCAAATTTAAACCGGAAAAANNAATTTTTTAACCCCGGGGNNCCCCAAAAANTTAACNNNCCCCCTTAATGGGTTTGCCCCCNGCCCCCNTTCCCTTNGGGAACTTTTTTGCCCTCTTAAAACGCACCGGAAAGGGGNGTTTTGGCCCCCCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15397#1 TTCCCCCCTTGGAAAAAGGGGTTTTTTTTCCAAGGGTTTTTTTTTGGTTAACCCCGGGTT 60 consensus_15397#3 ------------------------------------------------------------ consensus_15397#2 ------------------------------------------------------------ consensus_15397#0 ------------------------------------------------------------ consensus_15397#4 ------------------------------------------------------------ consensus_15397#1 TTTTCCCTCCCCCCGTTTTTTAAACCCGCCCCCTGATTTTTTTAAACCCCCCCTTTAGGG 120 consensus_15397#3 ------------------------------------------------------------ consensus_15397#2 ------------------------------------------------------------ consensus_15397#0 ---------------------------TATTTTTAGGGCCCGGAATTTCCCCTTTTTTTG 33 consensus_15397#4 ------------------------------------------------------------ consensus_15397#1 GGGATTTTTTTTTTGGGCCCCGAATTTTCCCCTTTTTTTGGAAGGGGGAAACCAGGGTTT 180 consensus_15397#3 ------------------------------------------------------------ consensus_15397#2 ------------------------------------------------------------ consensus_15397#0 GTAAGGGAAAACAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 93 consensus_15397#4 ------------------------------------------------------------ consensus_15397#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 240 consensus_15397#3 ------------------------------------------GCTACGTACCGGCATGAC 18 consensus_15397#2 -----------------NNNNNNNNNNNNNNNNNNNNNNAGCACTCAGAGCAATCTCTCA 43 consensus_15397#0 TTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 153 consensus_15397#4 ------------------------------------------------------------ consensus_15397#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAAGACATC 300 consensus_15397#3 AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------TC 67 consensus_15397#2 TTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATC 103 consensus_15397#0 TTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATC 213 consensus_15397#4 ------------------------------------------------------------ consensus_15397#1 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 360 consensus_15397#3 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 127 consensus_15397#2 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 163 consensus_15397#0 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 273 consensus_15397#4 -------TACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 53 ***************************************************** consensus_15397#1 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 420 consensus_15397#3 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 187 consensus_15397#2 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 223 consensus_15397#0 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 333 consensus_15397#4 AGAATAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 113 *** ******************************************************** consensus_15397#1 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 475 consensus_15397#3 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 242 consensus_15397#2 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 278 consensus_15397#0 TCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAG 393 consensus_15397#4 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 168 * ****** **************************** ****************** consensus_15397#1 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 534 consensus_15397#3 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 301 consensus_15397#2 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 337 consensus_15397#0 CTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGAT 453 consensus_15397#4 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 227 ************** *********************************** ********* consensus_15397#1 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCTT 589 consensus_15397#3 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCTT 356 consensus_15397#2 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCTT 392 consensus_15397#0 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCCT 508 consensus_15397#4 CTCCTGCCCGAAATTCCGGCACGAACTCCGTGCCCAATTCCCCTGCACCCCGGGGGAATT 287 * ** ** ** * * ** **** * * ** * * consensus_15397#1 CCCCGCCCTTCTTATCCCCTTTGGC-----------GGCGG-CCGCCCTCTTCGCTGCAT 637 consensus_15397#3 CCCCGCCCTTCTTATCCCCTTTGGC-----------GGCGG-CCGCCCTCTTCGCTGCAT 404 consensus_15397#2 CCCCGCCCTTCTTATCCCCTTTGGC-----------GGCGG-CCGCCCTCTTCGCTGCAT 440 consensus_15397#0 CCCCGCCCTTCTGCACTCAGCCGCCAAAAAAACAGAGGCAGACCATGCTGATCAGTTCAT 568 consensus_15397#4 CCCCTAATTCCTAAAACCGGCCGCCCCCGCGG--GTGGGAACNCCCCCCTTTTGTTCCCC 345 **** * ** * * * ** * * * * * consensus_15397#1 CGGCCTTGTCC------TTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTC--TC 689 consensus_15397#3 CGGCCTTGTCC------TTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTC--TC 456 consensus_15397#2 CGGCCTTGTCC------TTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTC--TC 492 consensus_15397#0 CATTCATAACCCAGAAATTAACCAAATAAGTTGGAGGAGATCGAGACGGCTAATTTGGTT 628 consensus_15397#4 CTTTATTGANG---GGTTTATTTCCNAACCTTNGGGGTTATCCNNGGNCCAAACT----- 397 * * ** * * * consensus_15397#1 CATCTTC---TGTATGTAGACGCTCTCGGCGGCG-CGCTCCTCCTCGCTGAGC--ACCCT 743 consensus_15397#3 CATCTTC---TGTATGTAGACGCTCTCGACGGCG-CGCTCCTCCTCGCTGAGC--ACCCT 510 consensus_15397#2 CATCTTC---TGTATGTAGACGCTCTCGGCGGCG-CGCTCCTCCTCGCTGAGC--ACCCT 546 consensus_15397#0 GGTTTTCAATTTTACCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTT 688 consensus_15397#4 -GTTTCCCCCNGTTTTAAAATGGTTTCCCCNCCCCCAATCCCCCCC-CAAATTTAAACCG 455 * * * * * * * * ** * * * * consensus_15397#1 GCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAA 803 consensus_15397#3 GCCGGCGCCGTCGCTGAAGTAGCGGGCCACGCCCCGGCCTCCCTCCATACCCAAAAAAAA 570 consensus_15397#2 GCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAA 606 consensus_15397#0 GTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGCTCCAC 748 consensus_15397#4 GAAAAANNAATTTTTTAACCCCGGGGNNCCCCAAAAANTTAACNNNCCCCCTTAATGGGT 515 * * * * * consensus_15397#1 -AACTGCCGCCGCCCACGCGGGTTGAT------TTTCTACTC-CTTCAG----------- 844 consensus_15397#3 -AAAAAAAAAAAAAAAAAAAAAAAAAAAAA-CACTGTCATGC-CGTGAC----------- 616 consensus_15397#2 -AACTGCCGCCGCCCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTG 665 consensus_15397#0 CAAATCAAATCATGAACCCGACTCGAACGATCAAAATTCGAC-ATTCAAAACGTCGTCAG 807 consensus_15397#4 TTGCCCCCNGCCCCCNTTCCCTTNGGGAA--CTTTTTTGCCCTCTTAAAACGCACCGGAA 573 * * consensus_15397#1 ------------------------------------------------------------ consensus_15397#3 ------------------------------------------------------------ consensus_15397#2 TAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGA 725 consensus_15397#0 TCACAAACACGATCAATGATCAGGTGACCACCAACCTGTATGTAGACGCTCTCGGCGGCG 867 consensus_15397#4 AGGGGNGTTTTGGCCCCCCCCCCC------------------------------------ 597 consensus_15397#1 ------------------------------------------------------------ consensus_15397#3 ------------------------------------------------------------ consensus_15397#2 GTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTCGGCCTCG 785 consensus_15397#0 ------------------------------------------------------------ consensus_15397#4 ------------------------------------------------------------ consensus_15397#1 ------ consensus_15397#3 ------ consensus_15397#2 TGCCGA 791 consensus_15397#0 ------ consensus_15397#4 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||