cluster # 154

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Oryza sativa
cluster # 154 cluster # 154 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_154#0 length = 684 sequences # 1

consensus_154#1 length = 680 sequences # 1

consensusID : consensus_154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [TTTTTTTTTTTTTTTTATTACAGAGAAAATGCACAAGCATACACACTCAAAAAAATGTTTCAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATGCGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTTCGGTTGTGGCGCAACCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGAACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAATGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCACATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGTTGGGATTTGGTGAGTACTGGGCCCCATCAATAATCCTGACCTTTCAACATTGAATTGGTGGGAAGGAAGCAGGGATTTTTAGTCTAAGACCCCTACCTAGGGCTTGGACCTACCCATATGGAATGTTCGAAGACGCCTCCCCGAACGACAAAATAGCATGCCCGCCTTTTTGATCACGCTTTACGGTGATGAGGCGGGATTTAAGTGTGCGACCCTGAGATGTAGAAGCGCGAAGAGCGGAGTTTTTTCCTCCGCGACTTAGTTGTG]

[+] EMBL CA760950             [TTTTTTTTTTTTTTTTATTACAGAGAAAATGCACAAGCATACACACTCAAAAAAATGTTTCAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATGCGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTTCGGTTGTGGCGCAACCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGAACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAATGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCACATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGTTGGGATTTGGTGAGTACTGGGCCCCATCAATAATCCTGACCTTTCAACATTGAATTGGTGGGAAGGAAGCAGGGATTTTTAGTCTAAGACCCCTACCTAGGGCTTGGACCTACCCATATGGAATGTTCGAAGACGCCTCCCCGAACGACAAAATAGCATGCCCGCCTTTTTGATCACGCTTTACGGTGATGAGGCGGGATTTAAGTGTGCGACCCTGAGATGTAGAAGCGCGAAGAGCGGAGTTTTTTCCTCCGCGACTTAGTTGTG]




>consensus_154#0
TTTTTTTTTTTTTTTTATTACAGAGAAAATGCACAAGCATACACACTCAAAAAAATGTTT
CAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATG
CGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTT
CGGTTGTGGCGCAACCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGA
ACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAA
TGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCA
CATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGTTGG
GATTTGGTGAGTACTGGGCCCCATCAATAATCCTGACCTTTCAACATTGAATTGGTGGGA
AGGAAGCAGGGATTTTTAGTCTAAGACCCCTACCTAGGGCTTGGACCTACCCATATGGAA
TGTTCGAAGACGCCTCCCCGAACGACAAAATAGCATGCCCGCCTTTTTGATCACGCTTTA
CGGTGATGAGGCGGGATTTAAGTGTGCGACCCTGAGATGTAGAAGCGCGAAGAGCGGAGT
TTTTTCCTCCGCGACTTAGTTGTG

consensusID : consensus_154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [TTTTTTTTATTACAGAGAAGATGCACAAGCATACACACTCAAAAAAATGTTTCAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATGCGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTTCGGTTGTGGCGCAGCCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGAACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAATGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCACATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA761902             [TTTTTTTTATTACAGAGAAGATGCACAAGCATACACACTCAAAAAAATGTTTCAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATGCGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTTCGGTTGTGGCGCAGCCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGAACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAATGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCACATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_154#1
TTTTTTTTATTACAGAGAAGATGCACAAGCATACACACTCAAAAAAATGTTTCAAAAGAA
TACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATGCGTTACTC
TATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTTCGGTTGTG
GCGCAGCCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGAACAAGGCC
ATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAATGACCTAT
TGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCACATGTGAA
TATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGNTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_154#0      TTTTTTTTTTTTTTTTATTACAGAGAAAATGCACAAGCATACACACTCAAAAAAATGTTT 60
consensus_154#1      --------TTTTTTTTATTACAGAGAAGATGCACAAGCATACACACTCAAAAAAATGTTT 52
                             ******************* ********************************

consensus_154#0      CAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATG 120
consensus_154#1      CAAAAGAATACTATAATAGAATATTGATGTGGCATGTTCTTTCATCAACAAATAGTAATG 112
                     ************************************************************

consensus_154#0      CGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTT 180
consensus_154#1      CGTTACTCTATTATTATTATATAATGAAAAAAATATTGGCCCTGCTCGGCTACACTTGTT 172
                     ************************************************************

consensus_154#0      CGGTTGTGGCGCAACCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGA 240
consensus_154#1      CGGTTGTGGCGCAGCCAGCATGCATAGTACTTTGTGTCAGCGGCTGCACCTTGCAGCTGA 232
                     ************* **********************************************

consensus_154#0      ACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAA 300
consensus_154#1      ACAAGGCCATTGTATTTGCAAACTCTACGTAGTGAGAACAGCTTTGTTAGCCTAAGAAAA 292
                     ************************************************************

consensus_154#0      TGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCA 360
consensus_154#1      TGACCTATTGGTCTTGGCATTAGAGTATTTACCTATCAGTTTCATGTCACTATTTTACCA 352
                     ************************************************************

consensus_154#0      CATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGTTGG 420
consensus_154#1      CATGTGAATATAGGATAATACAAAATAGAAATGGATGGAAAGAGGATAGGGTTTGGNTNN 412
                     ******************************************************** *  

consensus_154#0      GATTTGGTGAGTACTGGGCCCCATCAATAATCCTGACCTTTCAACATTGAATTGGTGGGA 480
consensus_154#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 472
                                                                                 

consensus_154#0      AGGAAGCAGGGATTTTTAGTCTAAGACCCCTACCTAGGGCTTGGACCTACCCATATGGAA 540
consensus_154#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 532
                                                                                 

consensus_154#0      TGTTCGAAGACGCCTCCCCGAACGACAAAATAGCATGCCCGCCTTTTTGATCACGCTTTA 600
consensus_154#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 592
                                                                                 

consensus_154#0      CGGTGATGAGGCGGGATTTAAGTGTGCGACCCTGAGATGTAGAAGCGCGAAGAGCGGAGT 660
consensus_154#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 652
                                                                                 

consensus_154#0      TTTTTCCTCCGCGACTTAGTTGTG---- 684
consensus_154#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNN 680