These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence [GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCCATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT] [+] EMBL CF277525 [GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCCATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATAC ] [+] EMBL AU093445 [ CCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGAT ] [+] EMBL CA758721 [ ACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT] [+] EMBL OS1321836 [ AAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAGGATGTTCAAGTGCACCGACACCTTCCTCGGg ] consensusID : consensus_15411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 697 fasta sequence [ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG-CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG-AAGATGTTCAAGTGCACCGACA-CCTTCCTCGGCATGTGCGGCCCT-CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG-CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC-TAGAA-GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA] [+] EMBL CF336632 [ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAAT ] [+] EMBL AB059238 [ AAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTCTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGACAATAGATA ] [+] EMBL CF307868 [ AAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAG AATGCGCCGTCGTCAAGACCTACCCTGGN AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATACATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAA ] [+] EMBL AK059239 [ CACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAA ] [+] EMBL BU673925 [ gGCTTTAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTTGGAAGGGGGTTTGCATGTTACTTGGGAaa ] [+] EMBL AU092803 [ CTACTAGTACCAAGTAGAGNAAATAGTCCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCA TCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGNCAGCTNAAGTGCTGCANCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTAaaaa ] [+] EMBL CB682786 [ AAATACCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAA ] [+] EMBL CB096984 [ AATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCCCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATACG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGGTAATATTATCTTGTGATAATAGATATATATTGTCcatattat] [+] EMBL CK085165 [ TTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAG ] [-] EMBL CF307869 [ ACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGNAAGATGTTCAAGTGCACCGACACCCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATACATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA] [-] EMBL BI306073 [ ACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTTTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATAT ] [+] EMBL OSS3139A [ CCTTCCTCGGCATGTGCGGNCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGNATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTNAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTCTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGn ] [+] EMBL OSS3114A [ CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC ] [-] EMBL CF336631 [ GTGCGGCCCTCCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA] [-] EMBL CF277524 [ CGGCCCTCCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA] consensusID : consensus_15411#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA] [+] EMBL CF307599 [CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA] consensusID : consensus_15411#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAGAA] [+] EMBL C28025 [TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAGAA] consensusID : consensus_15411#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU093446 [ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15411#1 -----------------------------------------ATGGACTGAAGGGAGTAGA 19 consensus_15411#3 -----------------------------------------------------------T 1 consensus_15411#0 GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCC 60 consensus_15411#2 ------------------------------------------------------------ consensus_15411#4 ---------------------------------------------ATCGATCGNTCGATC 15 consensus_15411#1 AAAACCACAAACAC-AAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 77 consensus_15411#3 CCGCCCACGCNTCCGAAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 60 consensus_15411#0 ATAACCACAAACAC-AAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 118 consensus_15411#2 ---------CTGAAGGA---GTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTG 48 consensus_15411#4 GATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTG 75 * * * * * * * * ** ** * ** * consensus_15411#1 AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTCTTGGTGATCCTGG 135 consensus_15411#3 AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTNTTGGTGATCCTGG 118 consensus_15411#0 AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTCTTGGTGATCCTGG 176 consensus_15411#2 TGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAN 108 consensus_15411#4 TGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAA 135 * * *** * * * ** * * ** * ** * consensus_15411#1 CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 195 consensus_15411#3 CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 178 consensus_15411#0 CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 236 consensus_15411#2 TNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 168 consensus_15411#4 TAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATG 195 ** * * consensus_15411#1 GTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 255 consensus_15411#3 GTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 238 consensus_15411#0 GTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 296 consensus_15411#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 228 consensus_15411#4 TTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 255 * ** * * ** * ** * ** ** consensus_15411#1 TCTCCTTCTCGGGGCTCTACACCTGCGACGA------CATCGTCAAGAAATGCGACCCTG 309 consensus_15411#3 TCTCCTTCTCGGGGNTCTACACCTGCGACGN------CATCGTCAAGAAATGCGACCCTG 292 consensus_15411#0 TCTCCTTCTCGGGGCTCTACACCTGCGACGA------CATCGTCAAGAAATGCGACCCTG 350 consensus_15411#2 NCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCC 288 consensus_15411#4 AA---------------------------------------------------------- 257 consensus_15411#1 TCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACA 369 consensus_15411#3 TNTGCAAGAA-------------------------------------------------- 302 consensus_15411#0 TCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACA 410 consensus_15411#2 CAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAA 348 consensus_15411#4 ------------------------------------------------------------ consensus_15411#1 CCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGA 429 consensus_15411#3 ------------------------------------------------------------ consensus_15411#0 CCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGA 470 consensus_15411#2 AACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAA 408 consensus_15411#4 ------------------------------------------------------------ consensus_15411#1 CCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATAC 489 consensus_15411#3 ------------------------------------------------------------ consensus_15411#0 CCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATAC 530 consensus_15411#2 AAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA---------------------------- 440 consensus_15411#4 ------------------------------------------------------------ consensus_15411#1 AGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGT 549 consensus_15411#3 ------------------------------------------------------------ consensus_15411#0 AGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGT 590 consensus_15411#2 ------------------------------------------------------------ consensus_15411#4 ------------------------------------------------------------ consensus_15411#1 TGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTACTTGG 609 consensus_15411#3 ------------------------------------------------------------ consensus_15411#0 TGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNN 650 consensus_15411#2 ------------------------------------------------------------ consensus_15411#4 ------------------------------------------------------------ consensus_15411#1 GAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGT 669 consensus_15411#3 ------------------------------------------------------------ consensus_15411#0 NNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT----------- 699 consensus_15411#2 ------------------------------------------------------------ consensus_15411#4 ------------------------------------------------------------ consensus_15411#1 GATAATAGATATATATTGTCTAAAAAAA 697 consensus_15411#3 ---------------------------- consensus_15411#0 ---------------------------- consensus_15411#2 ---------------------------- consensus_15411#4 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||