These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2564 fasta sequence [CATGTTAAAAAAGAGGATGTATGAGTTGATCCTAACGAGACTTTGATCGGGGGCTGAAAGCCCTTTTACAGGAGAGCCTGGAATCACGTAAGTTGGAGCTGCGGGCCAAACCCACTTTGAACATGGTGATACCAATGAATGTGTTTGAAAGGTCAAAGGACTTAAGGGCCACTGAACTAGAGAATGGAGGAGAAAATGCATCCGTGAGTATCAATGATGGGGATGGTGGCAAGGTGTGTATCAAGGTGCTTGTGAAGAAAGGGCACAAACAGCAGATAAAGGAAATGTTCATCCCTGGAGACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAAAGCATCAAGAATTAAACAAAACGTCATTGCAAACTGGGGACTGAAGCCAAGGAGGAATCAACGCAGGCAGCAGTATCAGGTCTGCTGGGCGTGGCAGCTGGGATGCTGGTTCAAACAGACGTGGAGGTGCTCGGCGGCGCTACCACATCACTGGTGGGTTCAACTATGGTTATGGCAGAAGTCGAGATCATAAACTGGCTGCCACATCCTTTGCCTCAGAAATGATCCGTCTGTATAGTCATCCCGAGGAAGTGAAGGTGCACGACTGTGAGGTCGCTCTAACATTACTCGATGACGGATGAATAGATAATCGTGGAATCCTCCTCCAGTATTTTACTGACATCCGTTGTGCCCGCAGACTGCATCTTCCATTCATCCATTGTGCCCGCAGGCTGCATCCGAAGACCCTAAGCTTGAGGATTCAGTTTACTCGCTTTCTCAGTGCCCTTTTTACCCGTTCGAGCTGTACGCGCGCCACTCCTGGACTCCTGGTGCCTGAGTGCCTCCCATCATCTGGTACCAACACTACCCCTCTTCCTTCCTCCCCCTTCATGATTAACACCTCTTGCTCGATACGCGTTTGTGCGCGTCTACTATTTCCACCCAGCAATTACGACGGGGTAAAGCAAAAGCGAGGCGCCCGGGGTGACCGGCGCGCGTGACCCCGATGCCAAGCCCCGCTCCCCCAATGCGATCGCGCCGCGGTGCTCGTCCGAGTCCACTACGGGTTGGCACACCGGTGTCGCGTCCGATGTTACGCAGGGCGCCCGACCCGCGCATCTACAGGGAGCGCATCGTCGCGGCAGTAATCCATGATTACGGCTCGGAATTCTCCGTCCGTCCCTGCCCCTTCGGAGCGCACAGGCCACAGTGCCCCCACAATCACAAGGCCCAAACGGAATCGACCTCTTTACGCCTTCCAATCCATATGCTCCTCTCTCTTTAGTCTTTACTCTTTACACGGGTGGGCACCCTGCATATGGGGCGTCGTCGTCCTAGCTAGTAGCGCAGTTGCCATCTCGGAGGAAGGATCCATGCAACTGACTCATCAACAGCCATCTTTAAATCTTCTTTTCCCGGGCTCCTGACACTGGTGAGCGAACTTACGGCTTTAGGCTGTCCATCCATAGTTGCTGGAGCACTAGGGGAAAATAGTATCTGGGTGGCCTCTGGAATCTCTGGAGAAGTGGATTCTGTCATGGTGTCACTTGCAGCATCACCTTTTATTCCTCCAAGGAATCTGATGTGCGCGGCGCAGCCGTGGTGGCCTCGACGCCTCGCGGGGGAAGGGAAGGGGGAGCCTTGACTTTTCGGGATGTTTTGACTCTTGCGTGAGGTGCTAGATTCTGCGTCGCGCTGCCTGCCTAGTTGGGTTTCCCGGTTTTGTTAGTGTGGCGCGAATAAAGCGGCCGGATTCTGTTTCTTCCTGCCTGCTTTAGCCGTGGGATTGTGGTGCATGCTCCCCCTCTCTTTTCTCTTCACTTGTTCTTCTTGATCCGACTTGGATAAAGAAGCTAGCCAGCCACCGCATCTATGCGTATAATATCTAATCCCTCCTCTTTCTCTCTCTCTCCAGAGTCCAGTCTCAGGTGACCTTGATGTGGAAAAATAAGTAATGCATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTTAGCCGGAGACGTGACTCGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCAGCATATGACAGCAATTCCTCCACTACGTACGTGGACGCGGTAAATCCTTATGTGCTCTGCCGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGGGCGAAATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAATTTGGAGAAAAAAGGATTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGACCACCCAAAACAATTCCCCTACTGCACCTCTCACCGTCGAGTGTTGTGCATCTTAGTGACCACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGTGCGCTGTACACTTCAGAGTTCAGACAATTACCGAACGAGAGAAGAGAACAGGGAGTAGATTTGTAAGTGGGAATGTATAGTACAAAATAGTTCAGGCTCTGCACAGAAGCA] [+] EMBL AK119440 [CATGTTAAAAAAGAGGATGTATGAGTTGATCCTAACGAGACTTTGATCGGGGGCTGAAAGCCCTTTTACAGGAGAGCCTGGAATCACGTAAGTTGGAGCTGCGGGCCAAACCCACTTTGAACATGGTGATACCAATGAATGTGTTTGAAAGGTCAAAGGACTTAAGGGCCACTGAACTAGAGAATGGAGGAGAAAATGCATCCGTGAGTATCAATGATGGGGATGGTGGCAAGGTGTGTATCAAGGTGCTTGTGAAGAAAGGGCACAAACAGCAGATAAAGGAAATGTTCATCCCTGGAGACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAAAGCATCAAGAATTAAACAAAACGTCATTGCAAACTGGGGACTGAAGCCAAGGAGGAATCAACGCAGGCAGCAGTATCAGGTCTGCTGGGCGTGGCAGCTGGGATGCTGGTTCAAACAGACGTGGAGGTGCTCGGCGGCGCTACCACATCACTGGTGGGTTCAACTATGGTTATGGCAGAAGTCGAGATCATAAACTGGCTGCCACATCCTTTGCCTCAGAAATGATCCGTCTGTATAGTCATCCCGAGGAAGTGAAGGTGCACGACTGTGAGGTCGCTCTAACATTACTCGATGACGGATGAATAGATAATCGTGGAATCCTCCTCCAGTATTTTACTGACATCCGTTGTGCCCGCAGACTGCATCTTCCATTCATCCATTGTGCCCGCAGGCTGCATCCGAAGACCCTAAGCTTGAGGATTCAGTTTACTCGCTTTCTCAGTGCCCTTTTTACCCGTTCGAGCTGTACGCGCGCCACTCCTGGACTCCTGGTGCCTGAGTGCCTCCCATCATCTGGTACCAACACTACCCCTCTTCCTTCCTCCCCCTTCATGATTAACACCTCTTGCTCGATACGCGTTTGTGCGCGTCTACTATTTCCACCCAGCAATTACGACGGGGTAAAGCAAAAGCGAGGCGCCCGGGGTGACCGGCGCGCGTGACCCCGATGCCAAGCCCCGCTCCCCCAATGCGATCGCGCCGCGGTGCTCGTCCGAGTCCACTACGGGTTGGCACACCGGTGTCGCGTCCGATGTTACGCAGGGCGCCCGACCCGCGCATCTACAGGGAGCGCATCGTCGCGGCAGTAATCCATGATTACGGCTCGGAATTCTCCGTCCGTCCCTGCCCCTTCGGAGCGCACAGGCCACAGTGCCCCCACAATCACAAGGCCCAAACGGAATCGACCTCTTTACGCCTTCCAATCCATATGCTCCTCTCTCTTTAGTCTTTACTCTTTACACGGGTGGGCACCCTGCATATGGGGCGTCGTCGTCCTAGCTAGTAGCGCAGTTGCCATCTCGGAGGAAGGATCCATGCAACTGACTCATCAACAGCCATCTTTAAATCTTCTTTTCCCGGGCTCCTGACACTGGTGAGCGAACTTACGGCTTTAGGCTGTCCATCCATAGTTGCTGGAGCACTAGGGGAAAATAGTATCTGGGTGGCCTCTGGAATCTCTGGAGAAGTGGATTCTGTCATGGTGTCACTTGCAGCATCACCTTTTATTCCTCCAAGGAATCTGATGTGCGCGGCGCAGCCGTGGTGGCCTCGACGCCTCGCGGGGGAAGGGAAGGGGGAGCCTTGACTTTTCGGGATGTTTTGACTCTTGCGTGAGGTGCTAGATTCTGCGTCGCGCTGCCTGCCTAGTTGGGTTTCCCGGTTTTGTTAGTGTGGCGCGAATAAAGCGGCCGGATTCTGTTTCTTCCTGCCTGCTTTAGCCGTGGGATTGTGGTGCATGCTCCCCCTCTCTTTTCTCTTCACTTGTTCTTCTTGATCCGACTTGGATAAAGAAGCTAGCCAGCCACCGCATCTATGCGTATAATATCTAATCCCTCCTCTTTCTCTCTCTCTCCAGAGTCCAGTCTCAGGTGACCTTGATGTGGAAAAATAAGTAATGCATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTTAGCCGGAGACGTGACTCGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCAGCATATGACAGCAATTCCTCCACTACGTACGTGGACGCGGTAAATCCTTATGTGCTCTGCCGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGGGCGAAATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAATTTGGAGAAAAAAGGATTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGACCACCCAAAACAATTCCCCTACTGCACCTCTCACCGTCGAGTGTTGTGCATCTTAGTGACCACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGTGCGCTGTACACTTCAGAGTTCAGACAATTACCGAACGAGAGAAGAGAACAGGGAGTAGATTTGTAAGTGGGAATGTATAGTACAAAATAGTTCAGGCTCTGCACAGAAGCA] consensusID : consensus_1542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [ACAGATGTTCGTTCCTGGTGATTGCTCACTTGTGCAAAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAGAGTATTAAGCGCAGGATCCTGGAATACAATGAAAGGGAGGAAGAAGAAATGAATGGTGGATCGTCACAGATGGGAAATTGGGGTCAAGGAGGAAGCAACACCGGCAGCAGTATCAGATCAGGTGGACGGGGCATTTGGGATGGTTCGATCAGAGGAG] [+] EMBL CA757428 [ACAGATGTTCGTTCCTGGTGATTGCTCACTTGTGCAAAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAGAGTATTAAGCGCAGGATCCTGGAATACAATGAAAGGGAGGAAGAAGAAATGAATGGTGGATCGTCACAGATGGGAAATTGGGGTCAAGGAGGAAGCAACACCGGCAGCAGTATCAGATCAGGTGGACGGGGCATTTGGGATGGTTCGATCAGAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1542#0 CATGTTAAAAAAGAGGATGTATGAGTTGATCCTAACGAGACTTTGATCGGGGGCTGAAAG 60 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CCCTTTTACAGGAGAGCCTGGAATCACGTAAGTTGGAGCTGCGGGCCAAACCCACTTTGA 120 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 ACATGGTGATACCAATGAATGTGTTTGAAAGGTCAAAGGACTTAAGGGCCACTGAACTAG 180 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 AGAATGGAGGAGAAAATGCATCCGTGAGTATCAATGATGGGGATGGTGGCAAGGTGTGTA 240 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TCAAGGTGCTTGTGAAGAAAGGGCACAAACAGCAGATAAAGGAAATGTTCATCCCTGGAG 300 consensus_1542#1 ----------------------------------------ACAGATGTTCGTTCCTGGTG 20 * ****** * ***** * consensus_1542#0 ACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAAA 360 consensus_1542#1 ATTGCTCACTTGTGCAAAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAGA 80 * *********** ** ***************************************** * consensus_1542#0 GCATCAAGAATTAAAC---AAAACGTCATTGCAAACTGGGGACTGAAGCCAAGGAGGAAT 417 consensus_1542#1 GTATTAAGCGCAGGATCCTGGAATACAATGAAAGGGAGGAAGAAGAAATGAATGGTGGAT 140 * ** *** * ** ** * ** *** ** * * ** consensus_1542#0 CAACGCAGGCAGCAGTATCAGGTCTGCTGGGCGTGGCAGCTGGGATGCTGGTTCAAACAG 477 consensus_1542#1 CGTCACAGATGGGAAATTGGGGTCAA--GGAGGAAGCAACACCGGCAGCAGTATCAGATC 198 * * *** * * * **** ** * *** * * ** * consensus_1542#0 ACGTGGAGGTGCTCGGCGGCGCTACCACATCACTGGTGGGTTCAACTATGGTTATGGCAG 537 consensus_1542#1 AGGTGGACGGGGCATTTGGGATGGTTCGATCAGAGGAG---------------------- 236 * ***** * * ** **** ** * consensus_1542#0 AAGTCGAGATCATAAACTGGCTGCCACATCCTTTGCCTCAGAAATGATCCGTCTGTATAG 597 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TCATCCCGAGGAAGTGAAGGTGCACGACTGTGAGGTCGCTCTAACATTACTCGATGACGG 657 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 ATGAATAGATAATCGTGGAATCCTCCTCCAGTATTTTACTGACATCCGTTGTGCCCGCAG 717 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 ACTGCATCTTCCATTCATCCATTGTGCCCGCAGGCTGCATCCGAAGACCCTAAGCTTGAG 777 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GATTCAGTTTACTCGCTTTCTCAGTGCCCTTTTTACCCGTTCGAGCTGTACGCGCGCCAC 837 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TCCTGGACTCCTGGTGCCTGAGTGCCTCCCATCATCTGGTACCAACACTACCCCTCTTCC 897 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TTCCTCCCCCTTCATGATTAACACCTCTTGCTCGATACGCGTTTGTGCGCGTCTACTATT 957 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TCCACCCAGCAATTACGACGGGGTAAAGCAAAAGCGAGGCGCCCGGGGTGACCGGCGCGC 1017 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GTGACCCCGATGCCAAGCCCCGCTCCCCCAATGCGATCGCGCCGCGGTGCTCGTCCGAGT 1077 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CCACTACGGGTTGGCACACCGGTGTCGCGTCCGATGTTACGCAGGGCGCCCGACCCGCGC 1137 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 ATCTACAGGGAGCGCATCGTCGCGGCAGTAATCCATGATTACGGCTCGGAATTCTCCGTC 1197 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CGTCCCTGCCCCTTCGGAGCGCACAGGCCACAGTGCCCCCACAATCACAAGGCCCAAACG 1257 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GAATCGACCTCTTTACGCCTTCCAATCCATATGCTCCTCTCTCTTTAGTCTTTACTCTTT 1317 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 ACACGGGTGGGCACCCTGCATATGGGGCGTCGTCGTCCTAGCTAGTAGCGCAGTTGCCAT 1377 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CTCGGAGGAAGGATCCATGCAACTGACTCATCAACAGCCATCTTTAAATCTTCTTTTCCC 1437 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GGGCTCCTGACACTGGTGAGCGAACTTACGGCTTTAGGCTGTCCATCCATAGTTGCTGGA 1497 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GCACTAGGGGAAAATAGTATCTGGGTGGCCTCTGGAATCTCTGGAGAAGTGGATTCTGTC 1557 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 ATGGTGTCACTTGCAGCATCACCTTTTATTCCTCCAAGGAATCTGATGTGCGCGGCGCAG 1617 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CCGTGGTGGCCTCGACGCCTCGCGGGGGAAGGGAAGGGGGAGCCTTGACTTTTCGGGATG 1677 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TTTTGACTCTTGCGTGAGGTGCTAGATTCTGCGTCGCGCTGCCTGCCTAGTTGGGTTTCC 1737 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CGGTTTTGTTAGTGTGGCGCGAATAAAGCGGCCGGATTCTGTTTCTTCCTGCCTGCTTTA 1797 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GCCGTGGGATTGTGGTGCATGCTCCCCCTCTCTTTTCTCTTCACTTGTTCTTCTTGATCC 1857 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GACTTGGATAAAGAAGCTAGCCAGCCACCGCATCTATGCGTATAATATCTAATCCCTCCT 1917 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CTTTCTCTCTCTCTCCAGAGTCCAGTCTCAGGTGACCTTGATGTGGAAAAATAAGTAATG 1977 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTT 2037 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 AGCCGGAGACGTGACTCGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCA 2097 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 GCATATGACAGCAATTCCTCCACTACGTACGTGGACGCGGTAAATCCTTATGTGCTCTGC 2157 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGGGCGA 2217 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 AATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAA 2277 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TTTGGAGAAAAAAGGATTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGA 2337 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CCACCCAAAACAATTCCCCTACTGCACCTCTCACCGTCGAGTGTTGTGCATCTTAGTGAC 2397 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 CACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGTGCGC 2457 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 TGTACACTTCAGAGTTCAGACAATTACCGAACGAGAGAAGAGAACAGGGAGTAGATTTGT 2517 consensus_1542#1 ------------------------------------------------------------ consensus_1542#0 AAGTGGGAATGTATAGTACAAAATAGTTCAGGCTCTGCACAGAAGCA 2564 consensus_1542#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||