cluster # 15430

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Oryza sativa
cluster # 15430 cluster # 15430 Sequences # 22 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15430#0 length = 561 sequences # 15
consensus_15430#1 length = 558 sequences # 3

consensus_15430#2 length = 500 sequences # 2
consensus_15430#3 length = 452 sequences # 1
consensus_15430#4 length = 340 sequences # 1

consensusID : consensus_15430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 561
fasta sequence

                              [GAGTAGAAAACTCAACTCGATCGACCAT-TAC-TATAGAAACACTTTCTTCTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA-CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC-TGATTTAATTACGGATATAATATGA-TTA-TTACTACTGATCATCTAGA-CTATATTATGATGAGTATAACGATCTCTACG-TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT-ATCTATTAATTACTCCTACTTACTTATGTGATATATATA-G-TTGGCAATAAAGAGG-CATGGTATATATGAAATAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF299835             [GAGTAGAAAACTCAACTCGATCGACCAT TAC TATAGAAACACTTTCTTCTTCGTCTT CTCGATAGCC AAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTAC                                                                              ]
[+] EMBL CF300593             [                     CGACCATATACATATAGAAACACTTTCTTCTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGG CATGGTATATATGAATTAA                    ]
[+] EMBL BE230680             [                                         CACTTTCTTCTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGG CATGGT                                 ]
[+] EMBL CF301748             [                                           CTTTCTTCTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTAC                                                                              ]
[+] EMBL OSS16524A            [                                                  CTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATA NGAAGAGCGAGTGTNAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCNNGTCGGCAACNGTCGCAGCAA CGGCGACGACGACGACGACGACGT GATGTGGCTCCAGCTGCC TGATTTANTTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACT                                                                                                                             ]
[+] EMBL OSS16523A            [                                                  CTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATA NGAAGAGCGAGTNTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTNANTGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTNCNGTGTACTAGCTAGTTAGCTACTCGGACTAA TATTCGNTGCATGCC                                                                                                     ]
[+] EMBL OSS16375A            [                                                    TCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATA NGAAGAGCGAGTGTNAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGT GATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT AACTATTAATTACTCCTACTTACTTATGNGATATATATAGG TTGG AATAAAGNGG CAT                                    ]
[+] EMBL OSS16379A            [                                                    TCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATA NGAAGAGCGAGTGTNAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGT GATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGGTGCATGNCTTTAACCTATTAATTACTCCTACTTACTTATGNGATAT                                                               ]
[-] EMBL BI306223             [                                                     CGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGG CAT                                    ]
[-] EMBL BI306404             [                                                                                                                   GAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAA CGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGG CATGGTA                                ]
[-] EMBL CB964459             [                                                                                                                                                                CTCGTCGGCAACCGTCTCAGCAATCGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCGTGATTTAAGTACGGATATAATATGA TTA TTACTACTGAGCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCCATAAAGAGG CATGGTA                                ]
[-] EMBL CF299836             [                                                                                                                                                                                            GACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGGCCATGGTATATATG GATAAAAAAAAAAAAA         ]
[-] EMBL CF300594             [                                                                                                                                                                                                       CGACGACGTCGATGTGGCTCCAGCTGCC TGATTTAATTACGGATATAATATGA TTA TTACTACTGATCATCTAGA CTATATTATGATGAGTATAACGATCTCTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATTTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGG CATGGTATATATGTAATAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB965834             [                                                                                                                                                                                                                                    TGATTTAATTCCGGATATAATATGACTTACTTACTACTGATCATCTACA CTATACTATGATGAGTATAACGATCTCTACGCTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA GTTTGGCAATAAAGAGG                                        ]
[+] EMBL AU161488             [                                                                                                                                                                                                                                                                                tTAGACCTATATTATGATGAGTATAACGATCTNTACG TTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTT ATCTATTAATTACTCCTACTTACTTATGTGATATATATA G TTGGCAATAAAGAGG CATGGTATATATGAAAaa                     ]




>consensus_15430#0
GAGTAGAAAACTCAACTCGATCGACCATTACTATAGAAACACTTTCTTCTTCGTCTTCCT
CGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTG
AGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCA
ACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGAT
ATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTA
CGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTC
AATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGT
GTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATTAC
TCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAGGCATGGTATATATGAAATA
AAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 558
fasta sequence

                              [AGCAGGACGGCTNCANNNAGTAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACG-ACGACGACGACGTCGAT-GTGGCT-CCAGCTGCCTGATTTAATTACGGATATAAT-ATGATT-ATTACT-ACTGATCATCTAGACTATATTATGATGA-GTATAACGATCTCTACGTTAA-T-AAGTTCTGCATGGTCTAAGAGTACTC-AT-CTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGT-GAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATTACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAGGCATGGTATATATGAATAAAAAAAAAGTGCTATATATATAATGGGAAACTTATGTTTATATGGCGCAATAACTCCTAATGTTACACGACGTGTTTAACATTATGGTTTTGTCCAGGTATGTTTAAC]

[+] EMBL AA751868             [AGCAGGACGGCTNCANNNAGTAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACG ACGACGACGACGTCGAT GTGGCT CCAGCTGCCTGATTTAATTACGGATATAAT ATGATT ATTACT ACTGATCATCTAGACTATATTATGATGA GTATAACGATCTCTACGTTAA T AAGTTCTGCATGGTCTAAGAGTACTC AT CTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGT GAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTANCTANTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATTACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAAGCATGGTATATATGAATATATCTGGAGTGCTATATATATAATGGGAAACTTATGTTTATATGGCGCAATAACTCCTAATGTTACACGACGTGTTTAACATTATGGTTTTGTCCAGGTATGTTTAAC]
[+] EMBL AU101865             [                                                                    CCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGTACGACGACGACGTCGAT GTGGCT CCAGCTGCCTGATTTAATTACGGATATAAT ATGATT ATTACT ACTGATCATCTAGACTATATTATGATGA GTATAACGATCTCTACGTTAA TNAAGTTCTGCATGGTCTAAGAGTACTC AT CTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGT GAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATTACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAGGCATGGTATATATGAATAAAAAAAAA                                                                                                    ]
[+] EMBL AU096852             [                                                                                                                     CGATNGTGGCTCCCAGCTGCCTGATTTAATTACGGATATAATGATGATTNATTACTGACTGATCATCTAGACTATATTATGATGANGTATAACGATCTCTACGTTAANT AAGTTCTGCATGGTCTAAGAGTACTCGATGCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTNGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATTACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAGGCATGGTATATATGAATAAAAAAAA                                                                                                     ]




>consensus_15430#1
AGCAGGACGGCTNCANNNAGTAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAG
AGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGAT
GTGGCTCCAGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCATCTA
GACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGT
ACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTG
GTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTACTAGCTAGTTAGCTACTCGTACTAAT
TATTCGATGCATGCCTTTATCTATTAATTACTCCTACTTACTTATGTGATATATATAGTT
GGCAATAAAGAGGCATGGTATATATGAATAAAAAAAAAGTGCTATATATATAATGGGAAA
CTTATGTTTATATGGCGCAATAACTCCTAATGTTACACGACGTGTTTAACATTATGGTTT
TGTCCAGGTATGTTTAAC

consensusID : consensus_15430#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 500
fasta sequence

                              [GGCCGAGTNGAACATTCTTCTTCGTCTTCC-CGATAGCCANNNTNCACTGTGCTTGGAGATCATCAATGGCGATNGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGATATNATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCNAATATGCAGCAC-TTCAATTAGTCCTGTNATAGGTGATCACTGTGGTGAGTGTGCANACTGCANANG-TTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATCCNATNCNTGCCTTTATCTATNNATTACTCCNNCTTACTTATGTGATATATATAGTTGGCAATAAAAAAAAAAAAAAAAA]

[+] EMBL AA753362             [GGCCGAGTNGAACATTCTTCTTCGTCTTCC CGATAGCCANNNTNCACTGTGCTTGGAGATCATCAATGGCGATNGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGATATNATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCNAATATGCAGCAC TTCAATTAGTCCTGTNATAGGTGATCACTGTGGTGAGTGTGCANACTGCANANG TTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATCCNATNCNTGCCTTTATCTATNNATTACTCCNNCTTACTT                                        ]
[+] EMBL CB964790             [                   CTTCGTCTTCCTCGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATAGCGAAGAGCGAGTGTGAGCGCCTGNCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTTCAATTAGTCCTGTAATAGGTGATCACTGTGGTGAGTGTGCAGACTGCAGAGGTTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATTACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAAAAAAAAAAAAAAA]




>consensus_15430#2
GGCCGAGTNGAACATTCTTCTTCGTCTTCCCGATAGCCANNNTNCACTGTGCTTGGAGAT
CATCAATGGCGATNGCGAAGAGCGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGA
GCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGATG
TGGCTCCAGCTGCCTGATTTAATTACGGATATNATATGATTATTACTACTGATCATCTAG
ACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGTA
CTCATCTACATGCNAATATGCAGCACTTCAATTAGTCCTGTNATAGGTGATCACTGTGGT
GAGTGTGCANACTGCANANGTTTGCTGTGTGCTAGCTAGTTAGCTACTCGTACTAATTAT
CCNATNCNTGCCTTTATCTATNNATTACTCCNNCTTACTTATGTGATATATATAGTTGGC
AATAAAAAAAAAAAAAAAAA

consensusID : consensus_15430#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [TTCNGCCGACTCGTGCCGAATTCGGCACGAGGAAGACGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGATGTGGCTCCNGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACNTGCAAATTTGCAGCACTTNCNATTAGTCCGGTANTAGGTGNTCNCNGTGGNGNANTNTGCAAACTGCAAAGGTTTGGCTGTTTCCTACCTATTTNCCTCCCCCTCCTANTTTTCCAACCTGCCTTTNCCTTTAANTTCCCCCNCCTTACTTATGTGATATATATAGTTGGCAATAAANAAGCCTGGTN]

[+] EMBL AA753138             [TTCNGCCGACTCGTGCCGAATTCGGCACGAGGAAGACGAGTGTGAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGACGACGACGTCGATGTGGCTCCNGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACNTGCAAATTTGCAGCACTTNCNATTAGTCCGGTANTAGGTGNTCNCNGTGGNGNANTNTGCAAACTGCAAAGGTTTGGCTGTTTCCTACCTATTTNCCTCCCCCTCCTANTTTTCCAACCTGCCTTTNCCTTTAANTTCCCCCNCCTTACTTATGTGATATATATAGTTGGCAATAAANAAGCCTGGTN]




>consensus_15430#3
TTCNGCCGACTCGTGCCGAATTCGGCACGAGGAAGACGAGTGTGAGCGCCTTGCATGGGC
ATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGCAACGGCGACGACGACGA
CGACGACGTCGATGTGGCTCCNGCTGCCTGATTTAATTACGGATATAATATGATTATTAC
TACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGC
ATGGTCTAAGAGTACTCATCTACNTGCAAATTTGCAGCACTTNCNATTAGTCCGGTANTA
GGTGNTCNCNGTGGNGNANTNTGCAAACTGCAAAGGTTTGGCTGTTTCCTACCTATTTNC
CTCCCCCTCCTANTTTTCCAACCTGCCTTTNCCTTTAANTTCCCCCNCCTTACTTATGTG
ATATATATAGTTGGCAATAAANAAGCCTGGTN

consensusID : consensus_15430#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [TGGAGAGCAACCTCCTCGTCGGCANCCGTCGCAGCAACGGCGACNACNACCACACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCNTGGTCTAAGANTACTCATCTACNTGCAAATATGCAGCACTTTCAATTAGTCCNGTNATAGGTGATCACTGTGGTGAGTGTGCAGACNGCNGAAGTTTGCTGTGTGCTACCTAATTAGCTNCCCTTACNAATTATTCCATGCCTGCCTTTATCTNTTAATTACCCCCNC]

[+] EMBL BE228496             [TGGAGAGCAACCTCCTCGTCGGCANCCGTCGCAGCAACGGCGACNACNACCACACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCNTGGTCTAAGANTACTCATCTACNTGCAAATATGCAGCACTTTCAATTAGTCCNGTNATAGGTGATCACTGTGGTGAGTGTGCAGACNGCNGAAGTTTGCTGTGTGCTACCTAATTAGCTNCCCTTACNAATTATTCCATGCCTGCCTTTATCTNTTAATTACCCCCNC]




>consensus_15430#4
TGGAGAGCAACCTCCTCGTCGGCANCCGTCGCAGCAACGGCGACNACNACCACACGACGT
CGATGTGGCTCCAGCTGCCTGATTTAATTACGGATATAATATGATTATTACTACTGATCA
TCTAGACTATATTATGATGAGTATAACGATCTCTACGTTAATAAGTTCTGCNTGGTCTAA
GANTACTCATCTACNTGCAAATATGCAGCACTTTCAATTAGTCCNGTNATAGGTGATCAC
TGTGGTGAGTGTGCAGACNGCNGAAGTTTGCTGTGTGCTACCTAATTAGCTNCCCTTACN
AATTATTCCATGCCTGCCTTTATCTNTTAATTACCCCCNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15430#0      GAGTAGAAAACTCAACTCGATCGACCATTACTATAGAAACACTTTCTTCTTCGTCTTCCT 60
consensus_15430#2      -----------------------------GGCCGAGTNGAACATTCTTCTTCGTCTTCC- 30
consensus_15430#4      ------------------------------------------------------------
consensus_15430#1      ------------------------------------------------------------
consensus_15430#3      ------------------------------------------------------------
                                                                                   

consensus_15430#0      CGATAGCCAAAATACACTGTGCTTGGAGATCATCAATGGCGATA-GCGAAGAGCGAGTGT 119
consensus_15430#2      CGATAGCCANNNTNCACTGTGCTTGGAGATCATCAATGGCGATN-GCGAAGAGCGAGTGT 89
consensus_15430#4      ------------------------------------------------------------
consensus_15430#1      ----------------------------AGCAG-GACGGCTNCA-NNNAGTAGCGAGTGT 30
consensus_15430#3      -----------------TTCNGCCGACTCGTGCCGAATTCGGCACGAGGAAGACGAGTGT 43
                                                                                   

consensus_15430#0      GAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGC 179
consensus_15430#2      GAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGC 149
consensus_15430#4      -------------------------TGGAGAGCAACCTCCTCGTCGGCANCCGTCGCAGC 35
consensus_15430#1      GAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGC 90
consensus_15430#3      GAGCGCCTTGCATGGGCATTGCTACTGGAGAGCAACCTCCTCGTCGGCAACCGTCGCAGC 103
                                                ************************ **********

consensus_15430#0      AACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGA 239
consensus_15430#2      AACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGA 209
consensus_15430#4      AACGGCGACNACNACCAC-ACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGA 94
consensus_15430#1      AACGGCGACGACGACGACGACGACGTCGATGTGGCTCCAGCTGCCTGATTTAATTACGGA 150
consensus_15430#3      AACGGCGACGACGACGACGACGACGTCGATGTGGCTCCNGCTGCCTGATTTAATTACGGA 163
                       ********* ** ** ** ******************* *********************

consensus_15430#0      TATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCT 299
consensus_15430#2      TATNATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCT 269
consensus_15430#4      TATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCT 154
consensus_15430#1      TATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCT 210
consensus_15430#3      TATAATATGATTATTACTACTGATCATCTAGACTATATTATGATGAGTATAACGATCTCT 223
                       *** ********************************************************

consensus_15430#0      ACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTT 359
consensus_15430#2      ACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCNAATATGCAGCACTT- 328
consensus_15430#4      ACGTTAATAAGTTCTGCNTGGTCTAAGANTACTCATCTACNTGCAAATATGCAGCACTTT 214
consensus_15430#1      ACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACATGCAAATATGCAGCACTTT 270
consensus_15430#3      ACGTTAATAAGTTCTGCATGGTCTAAGAGTACTCATCTACNTGCAAATTTGCAGCACTTN 283
                       ***************** ********** *********** *** *** ********** 

consensus_15430#0      CAATTAGTCCTGTAATAGGTGATCACTGTGGTGA-GTGTGCAGACTGCAGAGGTTTTGCT 418
consensus_15430#2      CAATTAGTCCTGTNATAGGTGATCACTGTGGTGA-GTGTGCANACTGCANANGTTT-GCT 386
consensus_15430#4      CAATTAGTCCNGTNATAGGTGATCACTGTGGTGA-GTGTGCAGACNGCNGAAGTTT-GCT 272
consensus_15430#1      CAATTAGTCCTGTAATAGGTGATCACTGTGGTGA-GTGTGCAGACTGCAGAGGTTTTGCT 329
consensus_15430#3      CNATTAGTCCGGTANTAGGTGNTCNCNGTGGNGNANTNTGCAAACTGCAAAGGTTTGGCT 343
                       * ******** **  ****** ** * **** *   * **** ** **  * **** ***

consensus_15430#0      GTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATT 478
consensus_15430#2      GTGTGCTAGCTAGTTAGCTACTCGTACTAATTATCCNATNCNTGCCTTTATCTATNNATT 446
consensus_15430#4      GTGTGCTACCTAATTAGCTNCCCTTACNAATTATTCCATGCCTGCCTTTATCTNTTAATT 332
consensus_15430#1      GTGTACTAGCTAGTTAGCTACTCGTACTAATTATTCGATGCATGCCTTTATCTATTAATT 389
consensus_15430#3      GTTTCCTACCTATTTNCCTCCCCCTCCTANTTTTCCAA--CCTGCCTTTNCCTTTAANTT 401
                       ** * *** *** **  ** * * * * * ** * * *  * *******  ** *   **

consensus_15430#0      ACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAGGCATGGTATATATGAAA 538
consensus_15430#2      ACTCCNNCTTACTTATGTGATATATATAGTTGGCAATAAAAAAAAAAAAAAAAA------ 500
consensus_15430#4      ACCCCCNC---------------------------------------------------- 340
consensus_15430#1      ACTCCTACTTACTTATGTGATATATATAGTTGGCAATAAAGAGGCATGGTATATATGAAT 449
consensus_15430#3      CCCCCNCCTTACTTATGTGATATATATAGTTGGCAATAAANAAGCCTGGTN--------- 452
                        * **  *                                                    

consensus_15430#0      TAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 561
consensus_15430#2      ------------------------------------------------------------
consensus_15430#4      ------------------------------------------------------------
consensus_15430#1      AAAAAAAAAGTGCTATATATATAATGGGAAACTTATGTTTATATGGCGCAATAACTCCTA 509
consensus_15430#3      ------------------------------------------------------------
                                                                                   

consensus_15430#0      -------------------------------------------------
consensus_15430#2      -------------------------------------------------
consensus_15430#4      -------------------------------------------------
consensus_15430#1      ATGTTACACGACGTGTTTAACATTATGGTTTTGTCCAGGTATGTTTAAC 558
consensus_15430#3      -------------------------------------------------