These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1401 fasta sequence [CCAAAACAGCNCAGGCATTGCTGGATTTCAACCGTGAAGAGCTTCCGCTGTTCATCCTCGCTAACTGGAGAGGCTTTTCTGGTGGGCAAAGGGATCTGTTTGAAGGAATCCTTCAGGCTGGTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTG-TATATTCCAATGGGCGGAGAGC-TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG-AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA-GTGAAAA-GTGGAATA-ACGATGAA-GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGG-CTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGC-TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA-CA-CTGAAGTTTAA-TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC-TACTGG-ATG-TTTGG-TGTG-AGTTCTTGCA-AAGAGCA-GAATAAAGAGCAATG-CAAAGATTAGTCAGGCA-CGGAATG-TTGTTCCA-TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT-AATTGTTTATTTATTTTCCAATCCAAAAAAAACATAGCAATCCTCATCTTCTAGTGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB659856 [CCAAAACAGCNCAGGCATTGCTGGATTTCAACCGTGAAGAGCTTCCGCTGTTCATCCTCGCTAACTGGAGAGGCTTTTCTGGTGGGCAAAGGGATCTGTTTGAAGGAATCCTTCAGGCTGGTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTG TATATTCCAATGGGCGGAGAGC TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA AGGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACagtg ] [-] EMBL CB646503 [ AACCAGCCTGCTTTTGTG TATATTCCAATGGGCGGAGAGCTTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACAGGTGAAAAGGTGGAATAGGCGATGAAGGCTTTCgt ] [+] EMBL CB678492 [ GCTTCTGTGATATATTCCAATGGGCGGATAGC TTAGGGGAGGTGCATGGGTTGTGGGAGATAGCAAAATCTATCCAAAACGCATTGAGATGTATGCTGCACAGAACTGCAAAAGGTAATGTCCTTGAACCATAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAACAATGCATGCTAAGGCTTGACCCGGATGTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAAAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTATGAGGAGTATTATTGCTCGGATGAAACAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCTGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAATGATAGTTACTGAAGATGCACTTGCCAAGGAAATCATAGAAGCTGCTGGCGAGCAGCTGTCCCATAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTA ] [+] EMBL CA766424 [ GAGAGC TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGGCCTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGNCTAATGGTCTTTCAATTGGTCTTAACAAGATGAATCCTTCAAAANAGGAGCAGGTTATTGATGGTCTCAAGCAGCNTTNTGGGTTGACC ATGNGAATTTTTGTTTTCAGCATGAACC AACNGNATCNTTCTC AACGCTTA NC CTGAAGTTTAA TTGGGCTtt ] [-] EMBL CB637773 [ C TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTAAAAAAGATGAT ] [-] EMBL CB637827 [ GTGGTAGATAGCANAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGTTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTGAGAAAGATGATCCAAC ] [+] EMBL AK058817 [ CAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTCGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGG CTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGC TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA CA CTGAAGTTTAA TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAATAATACATAGCAATC ] [-] EMBL CB637862 [ TGTTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGAAAGAAAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ] [-] EMBL CB629533 [ ACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGG CTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGC TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA CA CTGAAGTTTAA TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAAT ] [+] EMBL BI809994 [ cAGATGAATCCTTCAAAGAGGGA CAGGTTATTGATGGTCTCA GCAGC TTCTGGGTTGACCCATGTGAATTTTGATATCCAGCATGAACCCAACAGAATCATACTC AACGCTAA C CTGAAGTTTAA TTGGGCTATCATTGATGCCATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCACAAGAGCA GAATAAAGAGC ATG CAAAGATTAGTCAGGCACCGGAATG TTGTTCCACTTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATTTCATATAGATACGATGGAATTCTTGATCCAGT AATTGTTTATTTATTTTCCCATCCCAAAAAAAaaa ] [+] EMBL BQ906555 [ ccGGTCTCAGGCAGC TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCCAACAGAATCATACTCAAACGCTAACCACCTGAAGTTTAACTTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGGAATGATTTGGCTGTG AGTTCTTGCA AAGAGCACGAATAAAGAGCAATGCCAAAGATTAGTCAGGCA CGGAATGCTTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATTTCATATAGATACGATGGAATTCTTGATCCAGTCAATTGTTTATTTATTTTCCAATCCCAAAAAAA ] [+] EMBL AU085994 [ ACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA CA CTGAAGTTTAA TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAATAATACATAGCAATCCTCATCTTCTAGTGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB966372 [ GGCTATCA TGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGG TTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCCATACTGG ATG TTTGG TGTGCAGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATAT ] [+] EMBL CB965761 [ GGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATAT ] [+] EMBL CB965433 [ GGCTATCA TGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTGGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATAT ] [+] EMBL CA766998 [ TTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCA TTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAAAAAAA ] [+] EMBL BI810008 [ GATT GGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGA CAAT CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCC ATTTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAAAAAAA ] consensusID : consensus_15437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [GTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAATGGGCGGAGAGCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATTTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTNNNATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATNNNNNNTTGCGNNNNNNNNNTACTGANNNTGCACTTGCCAAGGAAATCNNNNNNGCTGCTGGCGANNNNNTGTCCNNNNNNTCTGCATTNNNCTATATCANNNNNTGGTACCTTTCTTCCNNNNNATCTGAT] [+] EMBL CF196483 [GTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAATGGGCGGAGAGCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATTTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTNNNATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATNNNNNNTTGCGNNNNNNNNNTACTGANNNTGCACTTGCCAAGGAAATCNNNNNNGCTGCTGGCGANNNNNTGTCCNNNNNNTCTGCATTNNNCTATATCANNNNNTGGTACCTTTCTTCCNNNNNATCTGAT] consensusID : consensus_15437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [TGCAAAAGGTAATGTCCTTGAACCAGAGGGATTGGTTGAGATCAAATTCAGGCCCAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATTGGAGGTTTTGAAAGAAAGTAATTAATAATTACTTACCATGGAAATTAAAATATTTTGTCAGCAATATTCCTAATTCTGCATTTGACTTATAAAAAATGGACCTTTTTTAAATGGGTTGTGGAAAATTTTAATGGGATTAACTAGAAACTTTTTTTGTTGAATAATGATATCTAACTATAGAATTATC] [+] EMBL AW155458 [TGCAAAAGGTAATGTCCTTGAACCAGAGGGATTGGTTGAGATCAAATTCAGGCCCAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATTGGAGGTTTTGAAAGAAAGTAATTAATAATTACTTACCATGGAAATTAAAATATTTTGTCAGCAATATTCCTAATTCTGCATTTGACTTATAAAAAATGGACCTTTTTTAAATGGGTTGTGGAAAATTTTAATGGGATTAACTAGAAACTTTTTTTGTTGAATAATGATATCTAACTATAGAATTATC] consensusID : consensus_15437#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GGGCTATCATTGATCCATGGAAGAGTTTTTTGCACATAAAATGGGCAGCTTTTGAGATGGCATCTCAAGCAACCATATACATACAAGGATATGATTGGCGCCTCTGCCCTCACTCGGATCTCTTGCGTGTGAGTTCTCTGCAAAGAGCAGAATAAAGAGCTATGCACAGATTAGTCAGGCACGGAATGTTGTTCCAATTTCTAGTGATGTATTTAGATGTACGTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATCTTCATATAGATACGATGCGAATTCTTGATCCAGTAACTTGTTTATTGTATCTTTCCCATCCAAAAGAAAAA] [+] EMBL BI807551 [GGGCTATCATTGATCCATGGAAGAGTTTTTTGCACATAAAATGGGCAGCTTTTGAGATGGCATCTCAAGCAACCATATACATACAAGGATATGATTGGCGCCTCTGCCCTCACTCGGATCTCTTGCGTGTGAGTTCTCTGCAAAGAGCAGAATAAAGAGCTATGCACAGATTAGTCAGGCACGGAATGTTGTTCCAATTTCTAGTGATGTATTTAGATGTACGTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATCTTCATATAGATACGATGCGAATTCTTGATCCAGTAACTTGTTTATTGTATCTTTCCCATCCAAAAGAAAAA] consensusID : consensus_15437#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TCTCAAGAACCATATACATTACAAGGATATGATTGGGCCTGCTGCCCTGACTGGATGTTTTGGTGTGAGTTCTTCGCAAAGACAAGAATAAAGAGCAATGCAAAGATTAGTCAGGCACGGGAATGCTTGGTTCCATTTGTACGTCGATGTATTTGAGATGTATGTGTTGACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCATTTCATATAGATACGATGGAATTCTTGATC] [+] EMBL BI810834 [TCTCAAGAACCATATACATTACAAGGATATGATTGGGCCTGCTGCCCTGACTGGATGTTTTGGTGTGAGTTCTTCGCAAAGACAAGAATAAAGAGCAATGCAAAGATTAGTCAGGCACGGGAATGCTTGGTTCCATTTGTACGTCGATGTATTTGAGATGTATGTGTTGACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCATTTCATATAGATACGATGGAATTCTTGATC] consensusID : consensus_15437#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [ATCTCAGAGAACCATATACAGACAAGGATATGATTGGGCCTCTGCCCTACTGGATGTTTTGGTGTGAGTTCTGTCGCAATAAGACGCAGAATAAAGAGCAATGGCATAACGCCCTAGTCAGGCACAGGAATGTTGTGTTCCACTTGTGTGAGTGGATGTATTTAGATGTATTGTACTAG] [+] EMBL BI811598 [ATCTCAGAGAACCATATACAGACAAGGATATGATTGGGCCTCTGCCCTACTGGATGTTTTGGTGTGAGTTCTGTCGCAATAAGACGCAGAATAAAGAGCAATGGCATAACGCCCTAGTCAGGCACAGGAATGTTGTGTTCCACTTGTGTGAGTGGATGTATTTAGATGTATTGTACTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 CCAAAACAGCNCAGGCATTGCTGGATTTCAACCGTGAAGAGCTTCCGCTGTTCATCCTCG 60 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 CTAACTGGAGAGGCTTTTCTGGTGGGCAAAGGGATCTGTTTGAAGGAATCCTTCAGGCTG 120 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 GTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAA 180 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TGGGCGGAGAGCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAAC 240 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 ACATTGAGATGTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGG 300 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGT 360 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAA 420 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCC 480 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 AGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTG 540 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAA 600 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 GGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGT 660 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 CCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATG 720 consensus_15437#1 ------------------------------------------------------------ consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 GAAACAGTGAAAAGTGGAATAACGATGAAGCTTTCTTTGCTTGGAAAGATGATCCAACAA 780 consensus_15437#1 --------------------------------------------------GTTCTAATAT 10 consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 ACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGGCTCTCGCGTC 840 consensus_15437#1 TGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAATGGGCGGAGA 70 consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGA 900 consensus_15437#1 GCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGAT 130 consensus_15437#2 ------------------------------------------------------------ consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGCTTCTGGGTTGACCAA 960 consensus_15437#1 TTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAA 190 consensus_15437#2 ---------------TGCAAAAGGTAATGTCCTTGAACCAGAGGGATTGGTTGAGATCAA 45 consensus_15437#3 ------------------------------------------------------------ consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAACACTGAAG 1020 consensus_15437#1 ATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCT 250 consensus_15437#2 ATTCAGGCCCAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCT 105 consensus_15437#3 -------GGGCTATCATTGATCCAT--GGAAGAGTTTTTTGCACATAAAATGGGCAGCTT 51 consensus_15437#4 ------------------------------------------------------------ consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TTTAATTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGG-AGGTT 1079 consensus_15437#1 GAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCAC 310 consensus_15437#2 GAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCAC 165 consensus_15437#3 TTGAGATGGCATCTCAAGC--AACCATATACAT-ACAAGGATATG-ATTGGCGCCTCTGC 107 consensus_15437#4 -----------TCTCAAG---AACCATATACATTACAAGGATATG-ATTGGGCCTGCTGC 45 consensus_15437#5 ----------ATCTCAGAG--AACCATATACAG-ACAAGGATATG-ATTGG-GCCTCTGC 45 consensus_15437#0 TTGAGATGGCATCTCAAG---AACCATATACAT-ACAAGGATATG-ATTGG-GCCTCTGC 1133 consensus_15437#1 TAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTAC 370 consensus_15437#2 TAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTAC 225 * * * * * **** * ** * consensus_15437#3 CCTCACTCGGATCTCTTGCGTGTGAGTTCT-CTGCAAAGAG---CAGAATAAAGAGCTAT 163 consensus_15437#4 CCTGACT-GGATGTTTTG-GTGTGAGTTCT-TCGCAAAGAC---AAGAATAAAGAGCAAT 99 consensus_15437#5 CCT-ACT-GGATGTTTTG-GTGTGAGTTCTGTCGCAATAAGACGCAGAATAAAGAGCAAT 102 consensus_15437#0 CCT-ACT-GGATGTTTGG--TGTGAGTTCT--TGCAAAGAG---CAGAATAAAGAGCAAT 1184 consensus_15437#1 ACGGTTT--GCTGAATTGCATGACACCTCTGCTNNNATGGCTGCCAAAGGTGTGATCGGA 428 consensus_15437#2 ACGGTTT--GCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGA 283 * * * * * * ** * *** * * * ** * consensus_15437#3 G-CACAGA---TTAGTCAGG--CACGG-AATG-TTGTTCCAATTTCTAG----TGATGTA 211 consensus_15437#4 G-CAAAGA---TTAGTCAGG--CACGGGAATGCTTGGTTCCATTTGTACG--TCGATGTA 151 consensus_15437#5 GGCATAACGCCCTAGTCAGG--CACAGGAATGTTGTGTTCCACTTGTGTGAGTGGATGTA 160 consensus_15437#0 G-CAAAGA---TTAGTCAGG--CACGG-AATG--TTGTTCCATTTGTAG----TGATGTA 1231 consensus_15437#1 AAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATNNNNNNTTGCGNNNNNNNNNT 488 consensus_15437#2 AAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATTGGAGGTTTTGAAAGAAAGTA 343 * * ** * * * * * consensus_15437#3 TTT-A-GATGTACGTT---ACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATCTTCA 266 consensus_15437#4 TTTGA-GATGTATGTGTTGACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCA--TTTCA 208 consensus_15437#5 TTT-A-GATGTATTGT---ACTAG------------------------------------ 179 consensus_15437#0 TTT-A-GATGTATTTT---ACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAA-TGTCA 1285 consensus_15437#1 ACTGANNNTGCACTTGCC-AAGGAAATCNNNNNNGCT-GCTGGCGANNNNNTGTCCNNNN 546 consensus_15437#2 ATTAATAAT-TACTTACC-ATGGAAATTAAAATATTTTGTCAGCAATATTCCTAATTCTG 401 * * * * * consensus_15437#3 TATAGATACGATGCGAATTCTTGATCCAGTAACTTGTTTATTGTATCTTTCCCATCCAAA 326 consensus_15437#4 TATAGATACGATG-GAATTCTTGATC---------------------------------- 233 consensus_15437#5 ------------------------------------------------------------ consensus_15437#0 TATAGATACGATG-GAATTCTTGATCAAGTAATTGTTTATTTATTTTCCAATCCAAAAAA 1344 consensus_15437#1 NNTCTGCATTNNNCTATATCANNNNNTGGTACCTTTCTTCCNNNNNATCTGAT------- 599 consensus_15437#2 CATTTGACTTATAAAAAATGGACCTTTTTTAAATGGGTTGTGGAAAATTTTAATGGGATT 461 consensus_15437#3 AGAAAAA-------------------------------------------------- 333 consensus_15437#4 --------------------------------------------------------- consensus_15437#5 --------------------------------------------------------- consensus_15437#0 AACATAGCAATCCTCATCTTCTAGTGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAA 1401 consensus_15437#1 --------------------------------------------------------- consensus_15437#2 AACTAGAAACTTTTTTTGTTGAATAATGATATCTAACTATAGAATTATC-------- 510 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||