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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1401 fasta sequence
[CCAAAACAGCNCAGGCATTGCTGGATTTCAACCGTGAAGAGCTTCCGCTGTTCATCCTCGCTAACTGGAGAGGCTTTTCTGGTGGGCAAAGGGATCTGTTTGAAGGAATCCTTCAGGCTGGTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTG-TATATTCCAATGGGCGGAGAGC-TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG-AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA-GTGAAAA-GTGGAATA-ACGATGAA-GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGG-CTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGC-TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA-CA-CTGAAGTTTAA-TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC-TACTGG-ATG-TTTGG-TGTG-AGTTCTTGCA-AAGAGCA-GAATAAAGAGCAATG-CAAAGATTAGTCAGGCA-CGGAATG-TTGTTCCA-TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT-AATTGTTTATTTATTTTCCAATCCAAAAAAAACATAGCAATCCTCATCTTCTAGTGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB659856 [CCAAAACAGCNCAGGCATTGCTGGATTTCAACCGTGAAGAGCTTCCGCTGTTCATCCTCGCTAACTGGAGAGGCTTTTCTGGTGGGCAAAGGGATCTGTTTGAAGGAATCCTTCAGGCTGGTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTG TATATTCCAATGGGCGGAGAGC TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA AGGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACagtg ]
[-] EMBL CB646503 [ AACCAGCCTGCTTTTGTG TATATTCCAATGGGCGGAGAGCTTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACAGGTGAAAAGGTGGAATAGGCGATGAAGGCTTTCgt ]
[+] EMBL CB678492 [ GCTTCTGTGATATATTCCAATGGGCGGATAGC TTAGGGGAGGTGCATGGGTTGTGGGAGATAGCAAAATCTATCCAAAACGCATTGAGATGTATGCTGCACAGAACTGCAAAAGGTAATGTCCTTGAACCATAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAACAATGCATGCTAAGGCTTGACCCGGATGTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAAAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTATGAGGAGTATTATTGCTCGGATGAAACAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCTGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAATGATAGTTACTGAAGATGCACTTGCCAAGGAAATCATAGAAGCTGCTGGCGAGCAGCTGTCCCATAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTA ]
[+] EMBL CA766424 [ GAGAGC TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGGCCTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGNCTAATGGTCTTTCAATTGGTCTTAACAAGATGAATCCTTCAAAANAGGAGCAGGTTATTGATGGTCTCAAGCAGCNTTNTGGGTTGACC ATGNGAATTTTTGTTTTCAGCATGAACC AACNGNATCNTTCTC AACGCTTA NC CTGAAGTTTAA TTGGGCTtt ]
[-] EMBL CB637773 [ C TTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTAAAAAAGATGAT ]
[-] EMBL CB637827 [ GTGGTAGATAGCANAATCAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGTTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTGAGAAAGATGATCCAAC ]
[+] EMBL AK058817 [ CAATCCAGAACACATTGAGATGTATGCTG AGAGAACTGCAAAAGGTAATGTCCTCGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGG CTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGC TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA CA CTGAAGTTTAA TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAATAATACATAGCAATC ]
[-] EMBL CB637862 [ TGTTG AGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGAAAGAAAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ]
[-] EMBL CB629533 [ ACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAAGGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGTCCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATGGAAACA GTGAAAA GTGGAATA ACGATGAA GCTTTCTTTGCTTGGAAAGATGATCCAACAAACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGG CTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGC TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA CA CTGAAGTTTAA TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAAT ]
[+] EMBL BI809994 [ cAGATGAATCCTTCAAAGAGGGA CAGGTTATTGATGGTCTCA GCAGC TTCTGGGTTGACCCATGTGAATTTTGATATCCAGCATGAACCCAACAGAATCATACTC AACGCTAA C CTGAAGTTTAA TTGGGCTATCATTGATGCCATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCACAAGAGCA GAATAAAGAGC ATG CAAAGATTAGTCAGGCACCGGAATG TTGTTCCACTTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATTTCATATAGATACGATGGAATTCTTGATCCAGT AATTGTTTATTTATTTTCCCATCCCAAAAAAAaaa ]
[+] EMBL BQ906555 [ ccGGTCTCAGGCAGC TTCTGGGTTGACCAATGTGAATTTTGATATCCAGCATGAACCCAACAGAATCATACTCAAACGCTAACCACCTGAAGTTTAACTTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGGAATGATTTGGCTGTG AGTTCTTGCA AAGAGCACGAATAAAGAGCAATGCCAAAGATTAGTCAGGCA CGGAATGCTTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATTTCATATAGATACGATGGAATTCTTGATCCAGTCAATTGTTTATTTATTTTCCAATCCCAAAAAAA ]
[+] EMBL AU085994 [ ACCAATGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAA CA CTGAAGTTTAA TTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAATAATACATAGCAATCCTCATCTTCTAGTGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB966372 [ GGCTATCA TGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGG TTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCCATACTGG ATG TTTGG TGTGCAGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATAT ]
[+] EMBL CB965761 [ GGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATAT ]
[+] EMBL CB965433 [ GGCTATCA TGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGGAGGTTTGGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATGTCATAT ]
[+] EMBL CA766998 [ TTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGAGCAATG CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTTTTTTACTAGCA TTTTTTTCTTGGCCTGCCTCATGCCAATGTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAAAAAAA ]
[+] EMBL BI810008 [ GATT GGCCTCTGCCC TACTGG ATG TTTGG TGTG AGTTCTTGCA AAGAGCA GAATAAAGA CAAT CAAAGATTAGTCAGGCA CGGAATG TTGTTCCA TTTGTAGTGATGTATTTAGATGTATTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCC ATTTCATATAGATACGATGGAATTCTTGATCAAGT AATTGTTTATTTATTTTCCAATCCAAAAAAAA ]
consensusID : consensus_15437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[GTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAATGGGCGGAGAGCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATTTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTNNNATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATNNNNNNTTGCGNNNNNNNNNTACTGANNNTGCACTTGCCAAGGAAATCNNNNNNGCTGCTGGCGANNNNNTGTCCNNNNNNTCTGCATTNNNCTATATCANNNNNTGGTACCTTTCTTCCNNNNNATCTGAT]
[+] EMBL CF196483 [GTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAATGGGCGGAGAGCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGATTTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTNNNATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATNNNNNNTTGCGNNNNNNNNNTACTGANNNTGCACTTGCCAAGGAAATCNNNNNNGCTGCTGGCGANNNNNTGTCCNNNNNNTCTGCATTNNNCTATATCANNNNNTGGTACCTTTCTTCCNNNNNATCTGAT]
consensusID : consensus_15437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[TGCAAAAGGTAATGTCCTTGAACCAGAGGGATTGGTTGAGATCAAATTCAGGCCCAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATTGGAGGTTTTGAAAGAAAGTAATTAATAATTACTTACCATGGAAATTAAAATATTTTGTCAGCAATATTCCTAATTCTGCATTTGACTTATAAAAAATGGACCTTTTTTAAATGGGTTGTGGAAAATTTTAATGGGATTAACTAGAAACTTTTTTTGTTGAATAATGATATCTAACTATAGAATTATC]
[+] EMBL AW155458 [TGCAAAAGGTAATGTCCTTGAACCAGAGGGATTGGTTGAGATCAAATTCAGGCCCAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATTGGAGGTTTTGAAAGAAAGTAATTAATAATTACTTACCATGGAAATTAAAATATTTTGTCAGCAATATTCCTAATTCTGCATTTGACTTATAAAAAATGGACCTTTTTTAAATGGGTTGTGGAAAATTTTAATGGGATTAACTAGAAACTTTTTTTGTTGAATAATGATATCTAACTATAGAATTATC]
consensusID : consensus_15437#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[GGGCTATCATTGATCCATGGAAGAGTTTTTTGCACATAAAATGGGCAGCTTTTGAGATGGCATCTCAAGCAACCATATACATACAAGGATATGATTGGCGCCTCTGCCCTCACTCGGATCTCTTGCGTGTGAGTTCTCTGCAAAGAGCAGAATAAAGAGCTATGCACAGATTAGTCAGGCACGGAATGTTGTTCCAATTTCTAGTGATGTATTTAGATGTACGTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATCTTCATATAGATACGATGCGAATTCTTGATCCAGTAACTTGTTTATTGTATCTTTCCCATCCAAAAGAAAAA]
[+] EMBL BI807551 [GGGCTATCATTGATCCATGGAAGAGTTTTTTGCACATAAAATGGGCAGCTTTTGAGATGGCATCTCAAGCAACCATATACATACAAGGATATGATTGGCGCCTCTGCCCTCACTCGGATCTCTTGCGTGTGAGTTCTCTGCAAAGAGCAGAATAAAGAGCTATGCACAGATTAGTCAGGCACGGAATGTTGTTCCAATTTCTAGTGATGTATTTAGATGTACGTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATCTTCATATAGATACGATGCGAATTCTTGATCCAGTAACTTGTTTATTGTATCTTTCCCATCCAAAAGAAAAA]
consensusID : consensus_15437#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[TCTCAAGAACCATATACATTACAAGGATATGATTGGGCCTGCTGCCCTGACTGGATGTTTTGGTGTGAGTTCTTCGCAAAGACAAGAATAAAGAGCAATGCAAAGATTAGTCAGGCACGGGAATGCTTGGTTCCATTTGTACGTCGATGTATTTGAGATGTATGTGTTGACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCATTTCATATAGATACGATGGAATTCTTGATC]
[+] EMBL BI810834 [TCTCAAGAACCATATACATTACAAGGATATGATTGGGCCTGCTGCCCTGACTGGATGTTTTGGTGTGAGTTCTTCGCAAAGACAAGAATAAAGAGCAATGCAAAGATTAGTCAGGCACGGGAATGCTTGGTTCCATTTGTACGTCGATGTATTTGAGATGTATGTGTTGACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCATTTCATATAGATACGATGGAATTCTTGATC]
consensusID : consensus_15437#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence
[ATCTCAGAGAACCATATACAGACAAGGATATGATTGGGCCTCTGCCCTACTGGATGTTTTGGTGTGAGTTCTGTCGCAATAAGACGCAGAATAAAGAGCAATGGCATAACGCCCTAGTCAGGCACAGGAATGTTGTGTTCCACTTGTGTGAGTGGATGTATTTAGATGTATTGTACTAG]
[+] EMBL BI811598 [ATCTCAGAGAACCATATACAGACAAGGATATGATTGGGCCTCTGCCCTACTGGATGTTTTGGTGTGAGTTCTGTCGCAATAAGACGCAGAATAAAGAGCAATGGCATAACGCCCTAGTCAGGCACAGGAATGTTGTGTTCCACTTGTGTGAGTGGATGTATTTAGATGTATTGTACTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 CCAAAACAGCNCAGGCATTGCTGGATTTCAACCGTGAAGAGCTTCCGCTGTTCATCCTCG 60
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 CTAACTGGAGAGGCTTTTCTGGTGGGCAAAGGGATCTGTTTGAAGGAATCCTTCAGGCTG 120
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 GTTCTAATATTGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAA 180
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TGGGCGGAGAGCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAAC 240
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 ACATTGAGATGTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGG 300
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TTGAGATCAAATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGT 360
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TGATCAAGCTGAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAA 420
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TGGACACCACTAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCC 480
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 AGGTTGCTACACGGTTTGCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTG 540
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TGATCGGAAAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATAGGAGGTTGCGAA 600
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 GGAGAGTTACTGAAGATGCACTTGCCAAGGAAATCAGAGAAGCTGCTGGCGAGCAGCTGT 660
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 CCCAGAAATCTGCATTGGACTATATCAAGAAATGGTACCTTTCTTCCAATGGATCTGATG 720
consensus_15437#1 ------------------------------------------------------------
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 GAAACAGTGAAAAGTGGAATAACGATGAAGCTTTCTTTGCTTGGAAAGATGATCCAACAA 780
consensus_15437#1 --------------------------------------------------GTTCTAATAT 10
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 ACTATGAGAATCAACTCGAGGAGTTGAAGGCTGAAAGAGTATCCAAGTGGCTCTCGCGTC 840
consensus_15437#1 TGTTGAGAATCTGAGGACATATAACCAGCCTGCTTTTGTGTATATTCCAATGGGCGGAGA 70
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTAACAAGA 900
consensus_15437#1 GCTTAGGGGAGGTGCATGGGTTGTGGTAGATAGCAAAATCAATCCAGAACACATTGAGAT 130
consensus_15437#2 ------------------------------------------------------------
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGCTTCTGGGTTGACCAA 960
consensus_15437#1 TTATGCTGAGAGAACTGCAAAAGGTAATGTCCTTGAACCAGAAGGATTGGTTGAGATCAA 190
consensus_15437#2 ---------------TGCAAAAGGTAATGTCCTTGAACCAGAGGGATTGGTTGAGATCAA 45
consensus_15437#3 ------------------------------------------------------------
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TGTGAATTTTGATATCCAGCATGAACCAAACAGAATCATACTCAAACGCTAACACTGAAG 1020
consensus_15437#1 ATTCAGGCCAAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCT 250
consensus_15437#2 ATTCAGGCCCAAGGAACTGGAAGAATGCATGCTAAGGCTTGACCCGGAGTTGATCAAGCT 105
consensus_15437#3 -------GGGCTATCATTGATCCAT--GGAAGAGTTTTTTGCACATAAAATGGGCAGCTT 51
consensus_15437#4 ------------------------------------------------------------
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TTTAATTGGGCTATCATTGATGCAATGGAAGAGGTTTTTTGCACATAAAATGGG-AGGTT 1079
consensus_15437#1 GAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCAC 310
consensus_15437#2 GAGTACAAGGCTGAGAGAAATGAAGAAGGAAAATGCTGGCCTCTCGGAAATGGACACCAC 165
consensus_15437#3 TTGAGATGGCATCTCAAGC--AACCATATACAT-ACAAGGATATG-ATTGGCGCCTCTGC 107
consensus_15437#4 -----------TCTCAAG---AACCATATACATTACAAGGATATG-ATTGGGCCTGCTGC 45
consensus_15437#5 ----------ATCTCAGAG--AACCATATACAG-ACAAGGATATG-ATTGG-GCCTCTGC 45
consensus_15437#0 TTGAGATGGCATCTCAAG---AACCATATACAT-ACAAGGATATG-ATTGG-GCCTCTGC 1133
consensus_15437#1 TAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTAC 370
consensus_15437#2 TAGGAGGAGTATTATTGCTCGGATGAAGCAACTGATGCCTATATATACCCAGGTTGCTAC 225
* * * * * **** * ** *
consensus_15437#3 CCTCACTCGGATCTCTTGCGTGTGAGTTCT-CTGCAAAGAG---CAGAATAAAGAGCTAT 163
consensus_15437#4 CCTGACT-GGATGTTTTG-GTGTGAGTTCT-TCGCAAAGAC---AAGAATAAAGAGCAAT 99
consensus_15437#5 CCT-ACT-GGATGTTTTG-GTGTGAGTTCTGTCGCAATAAGACGCAGAATAAAGAGCAAT 102
consensus_15437#0 CCT-ACT-GGATGTTTGG--TGTGAGTTCT--TGCAAAGAG---CAGAATAAAGAGCAAT 1184
consensus_15437#1 ACGGTTT--GCTGAATTGCATGACACCTCTGCTNNNATGGCTGCCAAAGGTGTGATCGGA 428
consensus_15437#2 ACGGTTT--GCTGAATTGCATGACACCTCTGCTAGAATGGCTGCCAAAGGTGTGATCGGA 283
* * * * * * ** * *** * * * ** *
consensus_15437#3 G-CACAGA---TTAGTCAGG--CACGG-AATG-TTGTTCCAATTTCTAG----TGATGTA 211
consensus_15437#4 G-CAAAGA---TTAGTCAGG--CACGGGAATGCTTGGTTCCATTTGTACG--TCGATGTA 151
consensus_15437#5 GGCATAACGCCCTAGTCAGG--CACAGGAATGTTGTGTTCCACTTGTGTGAGTGGATGTA 160
consensus_15437#0 G-CAAAGA---TTAGTCAGG--CACGG-AATG--TTGTTCCATTTGTAG----TGATGTA 1231
consensus_15437#1 AAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATNNNNNNTTGCGNNNNNNNNNT 488
consensus_15437#2 AAGGTTGTCGATTGGGAAGAATCTCGGTCCTTTTTCTATTGGAGGTTTTGAAAGAAAGTA 343
* * ** * * * * *
consensus_15437#3 TTT-A-GATGTACGTT---ACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCCATCTTCA 266
consensus_15437#4 TTTGA-GATGTATGTGTTGACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCA--TTTCA 208
consensus_15437#5 TTT-A-GATGTATTGT---ACTAG------------------------------------ 179
consensus_15437#0 TTT-A-GATGTATTTT---ACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAA-TGTCA 1285
consensus_15437#1 ACTGANNNTGCACTTGCC-AAGGAAATCNNNNNNGCT-GCTGGCGANNNNNTGTCCNNNN 546
consensus_15437#2 ATTAATAAT-TACTTACC-ATGGAAATTAAAATATTTTGTCAGCAATATTCCTAATTCTG 401
* * * * *
consensus_15437#3 TATAGATACGATGCGAATTCTTGATCCAGTAACTTGTTTATTGTATCTTTCCCATCCAAA 326
consensus_15437#4 TATAGATACGATG-GAATTCTTGATC---------------------------------- 233
consensus_15437#5 ------------------------------------------------------------
consensus_15437#0 TATAGATACGATG-GAATTCTTGATCAAGTAATTGTTTATTTATTTTCCAATCCAAAAAA 1344
consensus_15437#1 NNTCTGCATTNNNCTATATCANNNNNTGGTACCTTTCTTCCNNNNNATCTGAT------- 599
consensus_15437#2 CATTTGACTTATAAAAAATGGACCTTTTTTAAATGGGTTGTGGAAAATTTTAATGGGATT 461
consensus_15437#3 AGAAAAA-------------------------------------------------- 333
consensus_15437#4 ---------------------------------------------------------
consensus_15437#5 ---------------------------------------------------------
consensus_15437#0 AACATAGCAATCCTCATCTTCTAGTGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAA 1401
consensus_15437#1 ---------------------------------------------------------
consensus_15437#2 AACTAGAAACTTTTTTTGTTGAATAATGATATCTAACTATAGAATTATC-------- 510
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||