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Oryza sativa
cluster # 1545 cluster # 1545       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1545#0 length = 1508 sequences # 2  

consensusID : consensus_1545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1508
fasta sequence
                              [ACCCCAAACACCTCGCGCTCGCCGCGCCGCGCATCCCAATTCCCACATGGCGTCCTCCTCCTCCTCCTCCTCCCTCTGCCGACTACTCATCCCCAGGCCGACCACCCGCCGCTTCTCCGGAGGAGGAGGGGAGGGGGGAATGGCGGCGGCGGCGCCGGTGAAGCGGGAGGTGAAGCCCGAGGCGGGGGAGGGGTGGGGCGGGGGTGATCTGGGGGTGGTGCCGCCGCCGCCGCGGCCGATGGAGGGGCTCGGGGAGGCGGGGCCGGCGCCGTTCGTGGCGAAGACGTACGAGATGGTGGCGGACGCGGCCACCGACGCGGTGGTGTCGTGGGGGCCCGGCGGCTCGGGGGCCTCCTTCGTGGTGTGGGACCCGCACGCGCTCGCCGCCGGCGTGCTCCCGCGCTTCTTCAAGCACGCCAACTTCTCCTCCTTCGTTCGCCAGCTCAACACCTACGGGTTCCGAAAGGTCACTCCAGATCGGTGGGAGTTTGCAAATGAAGCCTTCTTAGCTGGTCAGAAGCATTTGCTGAAAAACATCAAGAGGAGGCGTGTTTCCAAGCCTCTCGTGGATTCACAACTAAGAAATAAAGCAAGTGTTGTTTTTGGACAGCCTGAGGCTCCTGGTGAGGTTGTGAGCTTGAAGAGAGACCGTGCAGCCCTCAGAGCTGAGGTCATCATGCTTAAGCAGCAGTACAACGCCTGTAAATCTCAGCTCATTGCCATGGAGGAGATGGTCCGCAACATCGAGAGAAGGCAACAGCGGACCATCGGCTTCTTTGCCAAGGTACTCACCAACCCGGCTTTCGTGCAGCAGGTTCTACTCAACTATGTGAATAAGAATGGCCTAAGAGGCGCCGCGAAAAGACAACGGCTGATGGAAAACGAAGAACAGCATGCTGATTCGCCATTGAACAAAGGTATGGAAGCTGCATCTGTGATGGAAGCTGATGTTTCTCCAGGGAGCACTGGCTGTGGCACAGTTGGGAAAGTGGAGACCACTCCAATGTGCAATTTCCAGAATATTGAGAATATGTGTGATGATGTCTGGGAAGAGCTGGACGCCTTACCTGAAACTGGAATGGAGCAGGAAGAAAAGGCTGGGATTGGCTCCTTCGATGTCGAGGAGTTCGTCGGAAGGCCTTGTGGTTGGGTTGATGACTGCCCATACCTTGTGGAGCCGATGCAGTTCGTGGAACACTAGAGGCATGAGAAGAATACAATCTGTCCTTAGAATAGTGGAACGTGTTTATAACGTCTGAATATCTGTATATCAATTACCCACTTCGATAGAAGTCTGTACTATGAATAGCATAAGCTCCTGGAACAGAGCTTAAATATAGGAAACGAACACTCTCAGGTAATGCAAGCCAGGAGTTTGTAGGATTGAAGATTTGTTACTGTAAATTCTGCTGGGCGCAGCAAAAAAATCGTGATGTTAGATATACAATACTGTCTCTGCAATGTAGCCGAGGAAAAATACGAATGCCAGTCTTATCAATGTGAATACT]

[+] EMBL AK064271             [ACCCCAAACACCTCGCGCTCGCCGCGCCGCGCATCCCAATTCCCACATGGCGTCCTCCTCCTCCTCCTCCTCCCTCTGCCGACTACTCATCCCCAGGCCGACCACCCGCCGCTTCTCCGGAGGAGGAGGGGAGGGGGGAATGGCGGCGGCGGCGCCGGTGAAGCGGGAGGTGAAGCCCGAGGCGGGGGAGGGGTGGGGCGGGGGTGATCTGGGGGTGGTGCCGCCGCCGCCGCGGCCGATGGAGGGGCTCGGGGAGGCGGGGCCGGCGCCGTTCGTGGCGAAGACGTACGAGATGGTGGCGGACGCGGCCACCGACGCGGTGGTGTCGTGGGGGCCCGGCGGCTCGGGGGCCTCCTTCGTGGTGTGGGACCCGCACGCGCTCGCCGCCGGCGTGCTCCCGCGCTTCTTCAAGCACGCCAACTTCTCCTCCTTCGTTCGCCAGCTCAACACCTACGGGTTCCGAAAGGTCACTCCAGATCGGTGGGAGTTTGCAAATGAAGCCTTCTTAGCTGGTCAGAAGCATTTGCTGAAAAACATCAAGAGGAGGCGTGTTTCCAAGCCTCTCGTGGATTCACAACTAAGAAATAAAGCAAGTGTTGTTTTTGGACAGCCTGAGGCTCCTGGTGAGGTTGTGAGCTTGAAGAGAGACCGTGCAGCCCTCAGAGCTGAGGTCATCATGCTTAAGCAGCAGTACAACGCCTGTAAATCTCAGCTCATTGCCATGGAGGAGATGGTCCGCAACATCGAGAGAAGGCAACAGCGGACCATCGGCTTCTTTGCCAAGGTACTCACCAACCCGGCTTTCGTGCAGCAGGTTCTACTCAACTATGTGAATAAGAATGGCCTAAGAGGCGCCGCGAAAAGACAACGGCTGATGGAAAACGAAGAACAGCATGCTGATTCGCCATTGAACAAAGGTATGGAAGCTGCATCTGTGATGGAAGCTGATGTTTCTCCAGGGAGCACTGGCTGTGGCACAGTTGGGAAAGTGGAGACCACTCCAATGTGCAATTTCCAGAATATTGAGAATATGTGTGATGATGTCTGGGAAGAGCTGGACGCCTTACCTGAAACTGGAATGGAGCAGGAAGAAAAGGCTGGGATTGGCTCCTTCGATGTCGAGGAGTTCGTCGGAAGGCCTTGTGGTTGGGTTGATGACTGCCCATACCTTGTGGAGCCGATGCAGTTCGTGGAACACTAGAGGCATGAGAAGAATACAATCTGTCCTTAGAATAGTGGAACGTGTTTATAACGTCTGAATATCTGTATATCAATTACCCACTTCGATAGAAGTCTGTACTATGAATAGCATAAGCTCCTGGAACAGAGCTTAAATATAGGAAACGAACACTCTCAGGTAATGCAAGCCAGGAGTTTGTAGGATTGAAGATTTGTTACTGTAAATTCTGCTGGGCGCAGCAAAAAAATCGTGATGTTAGATATACAATACTGTCTCTGCAATGTAGCCGAGGAAAAATACGAATGCCAGTCTTATCAATGTGAATACT]
[+] EMBL CF326496             [                                                                                                                                                                                                                                                                                                                                                                                aggCGCACGCGCTCGCCGCCGGCGTGCTCCCGCGCTTCTTCAAGCACGCCAACTTCTCCTCCTTCGTTCGCCAGCTCAACACCTACGGGTTCCGAAAGGTCACTCCAGATCGGTGGGAGTTTGCAAATGAAGCCTTCTTATCTGGTCAGAAGCATTTGCTGAAAAACTTCAAGAGGAGGCGTGTTTCCAAGCCTCTCGTGGATTCACAACTAAGAAATAAAGCAAGTGTTGTTTTTGGACAGCCTGAGGCTCCTGGTGAGGTTGTGAGCTTGAAGAGAGACCGTGCAGCCCTCAGAGCTGAGGTCATCATGCTTAAGCAGCAGTACAACGCCTGTAAATCTCAGCTCATTGCCATGGAGGAGATGGTCCGCAACATCGAGAGAAGGCAACAGCAGACCATCGGCTTCTTTGCCAAGGTACTCACCAACCCGGCTTTCGTGCAGCAGGTTCTACTCAACTATGTGAATAAGAATGGCCTAAGAGGCGCCGCGAAAAGACAACGGCTGATGGAAAACGAAGAACAGCATGCTGATTCGCCATTGAACAAAGGTATGGAAGCTGCATCTGTGATGGAAGCTGATGTTTCTCCAGGGAGCACTGGCTGTGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_1545#0 ACCCCAAACACCTCGCGCTCGCCGCGCCGCGCATCCCAATTCCCACATGGCGTCCTCCTC CTCCTCCTCCTCCCTCTGCCGACTACTCATCCCCAGGCCGACCACCCGCCGCTTCTCCGG AGGAGGAGGGGAGGGGGGAATGGCGGCGGCGGCGCCGGTGAAGCGGGAGGTGAAGCCCGA GGCGGGGGAGGGGTGGGGCGGGGGTGATCTGGGGGTGGTGCCGCCGCCGCCGCGGCCGAT GGAGGGGCTCGGGGAGGCGGGGCCGGCGCCGTTCGTGGCGAAGACGTACGAGATGGTGGC GGACGCGGCCACCGACGCGGTGGTGTCGTGGGGGCCCGGCGGCTCGGGGGCCTCCTTCGT GGTGTGGGACCCGCACGCGCTCGCCGCCGGCGTGCTCCCGCGCTTCTTCAAGCACGCCAA CTTCTCCTCCTTCGTTCGCCAGCTCAACACCTACGGGTTCCGAAAGGTCACTCCAGATCG GTGGGAGTTTGCAAATGAAGCCTTCTTAGCTGGTCAGAAGCATTTGCTGAAAAACATCAA GAGGAGGCGTGTTTCCAAGCCTCTCGTGGATTCACAACTAAGAAATAAAGCAAGTGTTGT TTTTGGACAGCCTGAGGCTCCTGGTGAGGTTGTGAGCTTGAAGAGAGACCGTGCAGCCCT CAGAGCTGAGGTCATCATGCTTAAGCAGCAGTACAACGCCTGTAAATCTCAGCTCATTGC CATGGAGGAGATGGTCCGCAACATCGAGAGAAGGCAACAGCGGACCATCGGCTTCTTTGC CAAGGTACTCACCAACCCGGCTTTCGTGCAGCAGGTTCTACTCAACTATGTGAATAAGAA TGGCCTAAGAGGCGCCGCGAAAAGACAACGGCTGATGGAAAACGAAGAACAGCATGCTGA TTCGCCATTGAACAAAGGTATGGAAGCTGCATCTGTGATGGAAGCTGATGTTTCTCCAGG GAGCACTGGCTGTGGCACAGTTGGGAAAGTGGAGACCACTCCAATGTGCAATTTCCAGAA TATTGAGAATATGTGTGATGATGTCTGGGAAGAGCTGGACGCCTTACCTGAAACTGGAAT GGAGCAGGAAGAAAAGGCTGGGATTGGCTCCTTCGATGTCGAGGAGTTCGTCGGAAGGCC TTGTGGTTGGGTTGATGACTGCCCATACCTTGTGGAGCCGATGCAGTTCGTGGAACACTA GAGGCATGAGAAGAATACAATCTGTCCTTAGAATAGTGGAACGTGTTTATAACGTCTGAA TATCTGTATATCAATTACCCACTTCGATAGAAGTCTGTACTATGAATAGCATAAGCTCCT GGAACAGAGCTTAAATATAGGAAACGAACACTCTCAGGTAATGCAAGCCAGGAGTTTGTA GGATTGAAGATTTGTTACTGTAAATTCTGCTGGGCGCAGCAAAAAAATCGTGATGTTAGA TATACAATACTGTCTCTGCAATGTAGCCGAGGAAAAATACGAATGCCAGTCTTATCAATG TGAATACT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)