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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1217 fasta sequence
[TGAATTACTAGAGTATCTTCCCCTTCCTTCCCTTGGGCCTTGGCGTAAAAGAAAGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT-AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA-CGATT-GTATATGGCTTGAATCTTCTTTTCTCACAA-CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA-ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTCTTCTCCACCTAAATGTTCTGAAAGGCATTTCATGGCTA]
[+] EMBL C97077 [TGAATTACTAGAGTATCTTCCCCTTCCTTCCCTTGGGCCTTGGCGTAAAAGAAAGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGNCTAGANTTTTTTTTCCTAAATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACT ]
[+] EMBL AK070541 [ GGCGTAAAAGAAAGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAAACTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTCTTCTCCACCTAAATGTTCTGAAAGGCATTTCATGGCTA]
[+] EMBL CF336852 [ AGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATCCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTT ACATTCTGCGTGAAGATTGGAAGCCTGT ]
[+] EMBL CF306697 [ TCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA ]
[+] EMBL OSC28471 [ ATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAgt ]
[+] EMBL OS0273A [ TTCTCGTCGTCTCCTCAGCTGCTTNCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTA ]
[+] EMBL AK104511 [ CTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATTTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTC ]
[+] EMBL CB680393 [ CGTCGCCCCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAAAAAGTAAGTTAGTGAGGCAATTGAAC ]
[+] EMBL C27441 [ GTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTNGACTAGAATTTTTTTTCCT AATGGCA ]
[+] EMBL AK104158 [ GCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCATTAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAA ]
[+] EMBL AU068310 [ GCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTC ]
[+] EMBL C26526 [ GCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGNCTAAGG CTATCATCCCAATATTG CTTNGAGGG AATG CTTCCTTAACA ]
[+] EMBL CF323596 [ gGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTAT ]
[+] EMBL AU068309 [ TGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCAAAaa ]
[-] EMBL BI305684 [ TCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGGACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCT ]
[+] EMBL BI795649 [ GAAGGTCAACACCGATTGGTATAT GCTTGAATCTTCTTTTCTCAC A CCTAATGATGAGGACCCTCTAAATCATGA GC GCA CAGTTCTTCGAGACACACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGCCAAT GCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAA GCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACC ATGCACTATGGTAAAA CAGTATATGTAACCCAGAAGGAACTTCTCTGTTATGTAACAACA CAGTTGCTAGAAAGTAAGTTAGTGAGGC ATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAAaaaaaaaa ]
[-] EMBL BI306627 [ ATCTTCTTTTCTCACAACCCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGGACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAGGTCT ]
[+] EMBL CF196020 [ TTATCTGCTGCTGCCATTTCTCCTACCCATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTANNNCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAaaaaaa ]
consensusID : consensus_15456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence
[TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACACGATGGTATATGGCTTGAATCTTCTTTTCTCACAACCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTTTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATTTCAGTCATTTTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTCTTTTTTCCAAAAAAAAAAAA]
[-] EMBL CA763282 [TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACACGATGGTATATGGCTTGAATCTTCTTTTCTCACAACCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTTTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATTTCAGTCATTTTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTCTTTTTTCCAAAAAAAAAAAA]
[+] EMBL AU181740 [ ACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCNCAATCCGAAGACTNTGGGTTAACCTGTTGTGGCAAATGTTNTNTTTTGGCCCTCGCGCGCATNTCAGTCATTNTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATGCCAGCTANAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCNCTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[AATTAGTCCTGTGGATGTCTCTTGTTGATGCTTTGCCCTTGTTGGAAAACTTTACTTGATCTTGAATTAGTTTGCATGTGAAAATAGTGAATAATTACTTTAAGAGGCCACTAACAGATTATTGATATCTGTAACTTGGAACTTTCCGTAAGTAACTGAACTGATTTTGTGTCACACCCTGCCCATTTCATGTGTATGCTCCTGTAGAAAAAAAAAAGGTTTCTTTGGATAATTTGTTCTTCTTTCTCAGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTCGCGTCTTCACAAAGGTTTGCCATTTCATAAATAATATAGTTCACTTGGGCTATCATTTGGTTTATGCAGTGTGATTATACTTATCAAGCATTTCCTTTCCTTTGTTTAGTTTGCATGAGTGTATCTCTGCATCTTACTACTCTCGTATCCAATTGGTGCA]
[+] EMBL CF329009 [AATTAGTCCTGTGGATGTCTCTTGTTGATGCTTTGCCCTTGTTGGAAAACTTTACTTGATCTTGAATTAGTTTGCATGTGAAAATAGTGAATAATTACTTTAAGAGGCCACTAACAGATTATTGATATCTGTAACTTGGAACTTTCCGTAAGTAACTGAACTGATTTTGTGTCACACCCTGCCCATTTCATGTGTATGCTCCTGTAGAAAAAAAAAAGGTTTCTTTGGATAATTTGTTCTTCTTTCTCAGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTCGCGTCTTCACAAAGGTTTGCCATTTCATAAATAATATAGTTCACTTGGGCTATCATTTGGTTTATGCAGTGTGATTATACTTATCAAGCATTTCCTTTCCTTTGTTTAGTTTGCATGAGTGTATCTCTGCATCTTACTACTCTCGTATCCAATTGGTGCA]
consensusID : consensus_15456#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[GGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTANCCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGNCTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97078 [GGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTANCCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGNCTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 TGAATTACTAGAGTATCTTCCCCTTCCTTCCCTTGGGCCTTGGCGTAAAAGAAAGAGAAA 60
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 TCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGG 120
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 GAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGA 180
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 AAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATG 240
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 GAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTG 300
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 AACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCTAATGGCAAGGATGATTTGATGA 360
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 ACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTA 420
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 ------------------------------------------------------------
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 CTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGG 480
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATT 60
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATT 540
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 GGAAGCCTGTCCTGAATGTCAACACGATGGTATATGGCTTGAATCTTCTTTTCTCACAAC 120
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 GGAAGCCTGTCCTGAATGTCAACACGATTGTATATGGCTTGAATCTTCTTTTCTCACAAC 600
consensus_15456#2 ----------------------------------------------------------AA 2
consensus_15456#1 CTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAA 180
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 CTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAA 660
consensus_15456#2 TTAGTCCTGTGGA-----TGTCTCTTGTTGATGCTTTGCCCTTGTTGGAAAACTTTACTT 57
consensus_15456#1 AGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAAC-CCACTTC 239
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 AGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAAC-CCACTTC 719
consensus_15456#2 GATCTTGAATTAGTTTGCATGTGAAAATAGTGAATAATTACTTTAAGAGGCCACTAACAG 117
consensus_15456#1 CCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGA-CTTATCTGCTGCTGC-C 297
consensus_15456#3 ------------------------------------------------------------
consensus_15456#0 CCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGA-CTTATCTGCTGCTGC-C 777
consensus_15456#2 ATTATTGATATCTGTAACTTGGAACTTTCCGTAAGTAACTGAACTGATTTTGTGTCACAC 177
consensus_15456#1 ATTTCTCCTACCA---ATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTC 354
consensus_15456#3 -------------------------GGTAAAAGCAGTATATGTAACCAAGAAGGAACTTC 35
consensus_15456#0 ATTTCTCCTACCA---ATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTC 834
consensus_15456#2 CCTGCCCATTTCATGTGTATGCTCCTGTAGAAAAAAAAAAGGTTTCTTTGGATAATTTGT 237
*** ** * * * ** * * * * *
consensus_15456#1 TTTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGT 414
consensus_15456#3 TCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGT 95
consensus_15456#0 TCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGT 894
consensus_15456#2 TCTTCTTTCTCAGGAAAAT-GCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGAT 296
* * * * * * * * * * * **** ** * * *** *** * *
consensus_15456#1 TCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGC 474
consensus_15456#3 TCATAACCCGCAATCCGAAGACTCTGGGTTANCCTGTTGTGGCAAATGTTCTCTTTTGGC 155
consensus_15456#0 TCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGC 954
consensus_15456#2 GCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTCGC---GT 353
** **** *** * * * * * * * * ** *
consensus_15456#1 CCTCGCGCGCATTTCAGTCATTTTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATG 534
consensus_15456#3 CCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATG 215
consensus_15456#0 CCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATG 1014
consensus_15456#2 CTTCACAAAGGTTTGCCATTTCATAAATAATATAGTTCACTTGG--GCTATCATTTGGT- 410
* ** * * * * * * * *** * * * *** * * * *
consensus_15456#1 CCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTA 594
consensus_15456#3 CCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGNCTTA 275
consensus_15456#0 CCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTA 1074
consensus_15456#2 ----TTATGCAGTGTGAT------TATACTTATCAAGCATTTCCTTTCCTTTGTTTAGTT 460
** * ** * *** * * *** ** ** * ** * *
consensus_15456#1 TGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGG 654
consensus_15456#3 TGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAAAAAAAAAAAAAAAAAAA 335
consensus_15456#0 TGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGG 1134
consensus_15456#2 TGCATGAGTGTATCTCTGCATCTTACTACTCTCGTATCCAATTGGTGCA----------- 509
** * * * * * * *** * * * * *
consensus_15456#1 GTAGTTGTGTTCTT--TTTTCCAAAAAAAAAAAA-------------------------- 686
consensus_15456#3 AAAAAAAAAAAAA---------AAAAAAAAAAAA-------------------------- 360
consensus_15456#0 GTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTCTTCTCCACCTAAATG 1194
consensus_15456#2 ------------------------------------------------------------
consensus_15456#1 -----------------------
consensus_15456#3 -----------------------
consensus_15456#0 TTCTGAAAGGCATTTCATGGCTA 1217
consensus_15456#2 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||