These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 2752 fasta sequence [AAACCCAACAAAAATCGCAGGGGGAGAAAAAATGGCGTNAGAAATCAGCCCCAACCGAAAGAAAAGGCGGAATTTTTTAGCCAAGAAAGCAGCTTTTCTTCATCTTCCTCCCCACTCTCTCTTGTTCCTATAAGGAGAGGAGAGAAGGAGAGAGAGGAGGTGGAGGAGGAGCAATGGCGGCCTGGGCATGGCCGCTCGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG-GTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGGCAGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACACCATGGAGTCCCTAGTTGAGCTTGACATGA-GCCAAAATAATC-TT-GGGGG-TGGCCAAAATATTCAATAC-AATCTTCCAAATAAGAAGC-TTGAGAGGCTCAATCTT-GC-TGGGAACCAGTTTGC-TGGAAATGTGCCATACTCAATTTCCACAATGCCTAAACTTAAGTATCTAAACCTTAATCATAACCAATTACAAGGAAATATGACAGATGTCTTTTCCAACCTTCCAAGTTTATCAACACTTGATCTCTCCTTAAATTCTCTTACTGGTGATCTCCCACAAAGTTTCACTTCTCTGTCAAG-CCTGAAAACTTTGTATCTGCAGAACAACCAATTTACTGGATCAATCAATGTCCTTGCTAATCTTCCCCTGGATAATTTAAATGTGGGAAACAACCGTTTTACTGGTTGGATTCCTAATGAGCTAAAGAAAATAAATAGTCTTCAAACCGATGGCAATTCTTGGAGCACAGGTCCGGCACCACCACCACCACCATTCACAGCACCTCCACCATCACGCAACCGTAAAAAAAGCCCAGGCAGACACTCCAATGGCAGTGGTAGCTCATCAAGTTCTGGTGGAAATTCAGGGTTACGTGCTGGAGCTATAGTAGGAATTATCGTAGCTCTACTGGTCATTGGAGCAGTTGTAGCATTCTTCTTGATAAAGAGAAAACGCAAAGGTACAAGGCAAGAACATGTTGAACAGCGACAGCCTTTCAATTCATACCCTTCCAATGAAGTTAAAGATGTGAAGCCTATACCAGAATCCACCAAGATAGAGGTGGAGCCTTTGCCTTCCCCTGTGGCCGTTAGTCTAAAACCACCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATGATGATGACTTTTCAAACAAGCCTGTTGCAAAGAAAAGTAATTCAGCATCAGTAAAAGCAACAGTTTATTCAGTTGCAGACCTACAGATGGCAACAGATAGTTTCAACA-TGGACAATCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAGTGATGGAAAGGTACTAGCTGTCAAGAAACTAAACAGTACTGTGTTGCCAAGCCAATCTTCAGACGATTTCTTTGACTTGGTGTCAAACATTTCAAAGTTGCACCATCCCAATCTCAATGAGCTTGTGGGCTATTGCATGGAGCATGGACAGCACTTGCTAGTTTATGATTTCCACAGAAATGGTTCGCTGCATGATATGCTTCACCTCCCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATAGCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGACTCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGCTGCATGACATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCT-GCCAAATCCCT-GTCCCGTTT-CGCAGACGTCATT-GCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTT-GTTCA-GAGGGCC-AACATGACTAGGAG-AATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTT-GTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAATGATATCAAAAAACTCATATCTGAAGCTATGTTGCAGTGATATCGATCCAATTTACAGTCTGGTAGATTCTTAAAAGTTTATATACTAAAATTAGTTGCATGATATATACTATTTTCTTTGTAAAAAAAAAAGCCACAGTTGAATATACTCTTGTAAACATAATTTCTTTACAGAGTTTTCCATATGCTATACTACTATAATTGATTGAGAACAAAAAAAAAA] [+] EMBL OSS10426A [AAACCCAACAAAAATCGCAGGGGGAGAAAAAATGGCGTNAGAAATCAGCCCCAACCGAAAGAAAAGGCGGAATTTTTTAGCCAAGAAAGCAGCTTTTCTTCATCTTCCTCCCCACTCTCTCTTGTTCCTATAAGGAGAGGAGAGAAGGAGAGAGAGGAGGTGGAGGAGGAGCAATGGCGGCCTGGGCATGGCCGCTCGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG GTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGG ] [+] EMBL AK111516 [ TTGTTCCTATAAGGAGAGGAGAGAAGGAGAGAGAGGAGGTGGAGGAGGAGCAATGGCGGCCTGGGCATGGCCGCTCGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG GTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGGCAGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACACCATGGAGTCCCTAGTTGAGCTTGACATGA GCCAAAATAATC TT GGGGG TGGCCAAAATATTCAATAC AATCTTCCAAATAAGAAGC TTGAGAGGCTCAATCTT GC TGGGAACCAGTTTGC TGGAAATGTGCCATACTCAATTTCCACAATGCCTAAACTTAAGTATCTAAACCTTAATCATAACCAATTACAAGGAAATATGACAGATGTCTTTTCCAACCTTCCAAGTTTATCAACACTTGATCTCTCCTTAAATTCTCTTACTGGTGATCTCCCACAAAGTTTCACTTCTCTGTCAAG CCTGAAAACTTTGTATCTGCAGAACAACCAATTTACTGGATCAATCAATGTCCTTGCTAATCTTCCCCTGGATAATTTAAATGTGGGAAACAACCGTTTTACTGGTTGGATTCCTAATGAGCTAAAGAAAATAAATAGTCTTCAAACCGATGGCAATTCTTGGAGCACAGGTCCGGCACCACCACCACCACCATTCACAGCACCTCCACCATCACGCAACCGTAAAAAAAGCCCAGGCAGACACTCCAATGGCAGTGGTAGCTCATCAAGTTCTGGTGGAAATTCAGGGTTACGTGCTGGAGCTATAGTAGGAATTATCGTAGCTCTACTGGTCATTGGAGCAGTTGTAGCATTCTTCTTGATAAAGAGAAAACGCAAAGGTACAAGGCAAGAACATGTTGAACAGCGACAGCCTTTCAATTCATACCCTTCCAATGAAGTTAAAGATGTGAAGCCTATACCAGAATCCACCAAGATAGAGGTGGAGCCTTTGCCTTCCCCTGTGGCCGTTAGTCTAAAACCACCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATGATGATGACTTTTCAAACAAGCCTGTTGCAAAGAAAAGTAATTCAGCATCAGTAAAAGCAACAGTTTATTCAGTTGCAGACCTACAGATGGCAACAGATAGTTTCAACA TGGACAATCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAGTGATGGAAAGGTACTAGCTGTCAAGAAACTAAACAGTACTGTGTTGCCAAGCCAATCTTCAGACGATTTCTTTGACTTGGTGTCAAACATTTCAAAGTTGCACCATCCCAATCTCAATGAGCTTGTGGGCTATTGCATGGAGCATGGACAGCACTTGCTAGTTTATGATTTCCACAGAAATGGTTCGCTGCATGATATGCTTCACCTCCCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATAGCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGACTCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGCTGCATGACATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCT GCCAAATCCCT GTCCCGTTT CGCAGACGTCATT GCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTT GTTCA GAGGGCC AACATGACTAGGAG AATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTT GTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAATGATAT ] [+] EMBL AY224517 [ gGAGAAGGAGAGAGAGGAGGTGGAGGAGGAGCAATGGCGGCCTGGGCATGGCCGCTCGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG GTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGGCAGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACACCATGGAGTCCCTAGTTGAGCTTGACATGA GCCAAAATAATC TT GGGGG TGGCCAAAATATTCAATAC AATCTTCCAAATAAGAAGC TTGAGAGGCTCAATCTT GC TGGGAACCAGTTTGC TGGAAATGTGCCATACTCAATTTCCACAATGCCTAAACTTAAGTATCTAAACCTTAATCATAACCAATTACAAGGAAATATGACAGATGTCTTTTCCAACCTTCCAAGTTTATCAACACTTGATCTCTCCTTAAATTCTCTTACTGGTGATCTCCCACAAAGTTTCACTTCTCTGTCAAG CCTGAAAACTTTGTATCTGCAGAACAACCAATTTACTGGATCAATCAATGTCCTTGCTAATCTTCCCCTGGATAATTTAAATGTGGGAAACAACCGTTTTACTGGTTGGATTCCTAATGAGCTAAAGAAAATAAATAGTCTTCAAACCGATGGCAATTCTTGGAGCACAGGTCCGGCACCACCACCACCACCATTCACAGCACCTCCACCATCACGCAACCGTAAAAAAAGCCCAGGCAGACACTCCAATGGCAGTGGTAGCTCATCAAGTTCTGGTGGAAATTCAGGGTTACGTGCTGGAGCTATAGCAGGAATTATCGTAGCTCTACTGGTCATTGGAGCAGTTGTAGCATTCTTCTTGATAAAGAGAAAACGCAAAGGTACAAGGCAAGAACATGTTGAACAGCGACAGCCTTTCAATTCATACCCTTCCAATGAAGTTAAAGATGTGAAGCCTATACCAGAATCCACCAAGATAGAGGTGGAGCCTTTGCCTTCCCCTGTGGCCGTTAGTCTAAAACCACCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATGATGATGACTTTTCAAACAAGCCTGTTGCAAAGAAAAGTAATTCAGCATCAGTAAAAGCAACAGTTTATTCAGTTGCAGACCTACAGATGGCAACAGATAGTTTCAACA TGGACAATCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAGTGATGGAAAGGTACTAGCTGTCAAGAAACTAAACAGTACTGTGTTGCCAAGCCAATCTTCAGACGATTTCTTTGACTTGGTGTCAAACATTTCAAAGTTGCACCATCCCAATCTCAATGAGCTTGTGGGCTATTGCATGGAGCATGGACAGCACTTGCTAGTTTATGATTTCCACAGAAATGGTTCGCTGCATGATATGCTTCACCTCCCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATAGCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGACTCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGCTGCATGACATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCT GCCAAATCCCT GTCCCGTTT CGCAGACGTCATT GCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTT GTTCA GAGGGCC AACATGACTAGGAG AATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGA ] [+] EMBL C73758 [ ccGGAGCAATGGCGNCCTGGGCATGGCTGC GNTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCGNTTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGG AGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACANCATGGAGTCCCTAGTTGAGCTTGACATGA GCCAAAATAATC TTNGGGGG TGGCCAAAATATTCAATAC AATCTTCCAAATAAGAAGC TTNAGAG ] [+] EMBL AU064258 [ CGGCCTGGGCATGGCCGCTCGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG GTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGGCAGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACACCATGGAGTCCCTAGTTGAGCTTGACATGA GCCAAAATAATC TT GGGGG TGGCCAAAATATTCAATAC AATCTTCCAAATAAGAAGC TTGAGAGGCTCAATCTT GC TGGGAACCAGTTTGC TGGAAATGTGCCATACTCAATTTCCACAATGCCTAAACTTAAGTATCTAAACCTTAATCANAACCAATTACAAGGAAATATGACAGATGTCTTTTCCAACCTTCCAAGTTTATCAACACTTGATCTCTCCTTAAANTCTCTTACTGGTGATTCCCCACAAAGTTTCAANTCTCTGTCAAGCCCTGAAAACTTTGTATCTGCAGAACAACCAATTTACTGGATCAATCA ] [+] EMBL C73759 [ GGCCTNGGCATGGCNGC NGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAATCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG NTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGGCAGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACAACATGGAGTCCCTAGTTGAGCTTGACATGAGGCCAAAATAATCTTT GGGGGTTGGCCAAAATATTCAATACAAATTTTCCAAATAAGAAGCTTTAAGNGGGTCAAACTTNGCTTGGGGACCAATTTNCTTGGAAATGTGCCATACTCA ] [+] EMBL CB636014 [ GGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCAGCCTCAATTCGCCGGGGCAGCTGCGCG GTTGGCAGGTGAATGGCGGTGACCCATGTGGCGCCTCATGGCAGGGCTTCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCTTGGGGCTTTCGGGGAATCTGGCCTACAATATGAACACCATGGAGTCCCTAGTTGAGCTTGACATGA GCCAAAATAATC TT GGGGG TGGCCAAAATATTCAATAC AATCTTCCAAATAAGAAGC TTGAGAGGCTCAATCTT GC TGGGAACCAGTTTGC TGGAAATGTGCCATACTCAATTTCCACAATGCCTAAACTTAAGTATCTAAACCTTAATCA ] [+] EMBL OSR2893A [ ACGNAAAGGTACAAGTCAAGAACATGTTGAACAGCGACANCGTTNCAATTCATACCCTTCCAATGAAGTTAAAGATGTGAAGCCTATACCAGAATCCACCAAGATAGAGGNGGAGCCTTNGCCTTCCCCTGTGGCCGTTAGTCTAAAACCACCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATGATGATGACTNTTCAAACAAGCCTGTTGCAAAGAAAAGTAATTCAGCATCAGTAAAAGCAACAGTTTATTCAGTTGCAGACCTACAGATGGCAACAGATAGTTTCAACATTGGACAATCTTGTTGGAGAGGGTACTTTTGGACG ] [+] EMBL OSR3293A [ ACGCAAAGGTACAAGGCAAGAACATGTTGAACAGCGACANCTTTTCAATTCATACCCTTCCAATGAAGTTAAAGATGTNAAGCCTATACCAGAATCCACCAAGATAGAGGTGGAGCCTTTGCCTTCCCCTGTGGCCGTTAGTCTAAAACCACCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATGATGATGACTTTTCAAACAAGCCTGTTGCAAAGAAAAGTAATTCAGCATCAGTAAAAGC ] [+] EMBL CB658275 [ CCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATGATGATGACTTTTCAAACAAGCCTGTTGCAAAGAAAAGTATTTCAGCATCAGTAAAAGCAACAGTTTATTCAGTTGCAGACCTACAGATGGCAACAGATAGTTTCAACA TGGACAATCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAGTGATGGAAAGGTACTAGCTGTCAAGAAACTAAACAGTACTGTGTTGCCAAGCCAATCTTCAGACGATTTCTTTGACTTGGTGTCAAACATTTCAAAGTTGCACCATCCCAATCTCAATGAGCTTGTGGGCTATTGCATGGAGCATGGACAGCACTTGCTAGTTTATGATTTCCACAGAAATGGTTCGCTGCATGATATGCTTCACCTCCCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATAGCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGACTCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGC ] [+] EMBL C22508 [ ATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATAGCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGACTCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGCTGCATGACATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCT GCCAAATCCCT GTCCCGTTTNCGCAGACGTCATT GCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTT GTTCA GAGGGCn a ] [+] EMBL C22572 [ ATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATAGCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGACTCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGCTGCATGACATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGGCCAAATCCCTGGTCCCGTTT CGCAGACGTCATTGGCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTT GTTCA GAGGGC ] [+] EMBL C22573 [ GGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCT GCCAAATCCCT GTCCCGTTT CGCAGACGTCATT GCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTT GTTCA GAGGGCC AACATGACTAGGAG AATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTT GTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAATGATAACAAAAAA ] [+] EMBL BI806171 [ CCGGAGTTCAGACC CCGATGTCTGA GTGGT CAAGC CTGGTCCCCCTT GTTCA GAGGGCC AACATGACTAGGAG AATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTTGGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAATGATATCAGCTTGCTCATATCTGAAGCTATGTTGCAGTGATATCGATCCAATTTACAGTCTGGTAGATTCTTAAAAGTTTATATACTAAAATTAGTTGCATGATATATACTATTTTCTTTGTAAAAAAAAAAGCCACAGTTGAATATACTCTTGTAAACATAATTTCTTTACAGAGTTTTCCATATGCTATACTACTATAATTGATTGAGAACAAAAAAAAAA] [+] EMBL AU095505 [ CTTNGTTCANGAGTGCCAAACATGACTAGGAGAAATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTT GTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAATGATATCAAAA ] [+] EMBL C22509 [ GAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTNACAGGTTTTGTCNCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAATGATAACAAAAAA ] consensusID : consensus_15475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 348 fasta sequence [CCGATGTCTGANGTGGTGCAAGCGCTGGTCCGCCTTGTTCAGNGGGCCAACATGACTAGGAGAATG-ATCGNCGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU095720 [CCGATGTCTGANGTGGTGCAAGCGCTGGTCCGCCTTGTTCAGAGGGCCAACATGACTAGGAGAATG ATCGNCGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCA AAAAAAAAAAAAAAA ] [+] EMBL AU094665 [ TCTGAGGTGGTGCAAGCGCTGGTCCNCCTTGTTCAGNGGGCCAACATGACTAGGAGAATG ATCGNCGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99542 [ TGC ANCGCTGGTCC CCTTGTTCAGNGGGCCAAC TGA TAGGAGANTGTATCGACGGCGAAGAGGGTTCTCGAAGACC GATGACCAGGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCATGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB682273 [ GATGCCCTTGACCAGGAGTTCGTGTAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTACAAGTTTGGCTGCTTCAT ] consensusID : consensus_15475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence [CCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22550 [CCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22551 [CCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTANACCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15475#0 AAACCCAACAAAAATCGCAGGGGGAGAAAAAATGGCGTNAGAAATCAGCCCCAACCGAAA 60 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 GAAAAGGCGGAATTTTTTAGCCAAGAAAGCAGCTTTTCTTCATCTTCCTCCCCACTCTCT 120 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CTTGTTCCTATAAGGAGAGGAGAGAAGGAGAGAGAGGAGGTGGAGGAGGAGCAATGGCGG 180 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CCTGGGCATGGCCGCTCGTCTTCCTCGTCTCGTGCTGCTGTTCTTGGACCCAGCGGCGAA 240 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TCTTGGTTGCTGCGACCACTGACGCCAATGATGTTACTGTCCTCAATGCGCTATTCACCA 300 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 GCCTCAATTCGCCGGGGCAGCTGCGCGGTTGGCAGGTGAATGGCGGTGACCCATGTGGCG 360 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CCTCATGGCAGGGCATCACCTGCTCTGGATCATCAGTCACAGCAATTAAATTGCCGAGCT 420 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGGGGCTTTCGGGGAATCTGGCCTACAATATGAACACCATGGAGTCCCTAGTTGAGCTTG 480 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 ACATGAGCCAAAATAATCTTGGGGGTGGCCAAAATATTCAATACAATCTTCCAAATAAGA 540 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 AGCTTGAGAGGCTCAATCTTGCTGGGAACCAGTTTGCTGGAAATGTGCCATACTCAATTT 600 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CCACAATGCCTAAACTTAAGTATCTAAACCTTAATCATAACCAATTACAAGGAAATATGA 660 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CAGATGTCTTTTCCAACCTTCCAAGTTTATCAACACTTGATCTCTCCTTAAATTCTCTTA 720 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CTGGTGATCTCCCACAAAGTTTCACTTCTCTGTCAAGCCTGAAAACTTTGTATCTGCAGA 780 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 ACAACCAATTTACTGGATCAATCAATGTCCTTGCTAATCTTCCCCTGGATAATTTAAATG 840 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGGGAAACAACCGTTTTACTGGTTGGATTCCTAATGAGCTAAAGAAAATAAATAGTCTTC 900 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 AAACCGATGGCAATTCTTGGAGCACAGGTCCGGCACCACCACCACCACCATTCACAGCAC 960 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CTCCACCATCACGCAACCGTAAAAAAAGCCCAGGCAGACACTCCAATGGCAGTGGTAGCT 1020 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CATCAAGTTCTGGTGGAAATTCAGGGTTACGTGCTGGAGCTATAGTAGGAATTATCGTAG 1080 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CTCTACTGGTCATTGGAGCAGTTGTAGCATTCTTCTTGATAAAGAGAAAACGCAAAGGTA 1140 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CAAGGCAAGAACATGTTGAACAGCGACAGCCTTTCAATTCATACCCTTCCAATGAAGTTA 1200 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 AAGATGTGAAGCCTATACCAGAATCCACCAAGATAGAGGTGGAGCCTTTGCCTTCCCCTG 1260 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGGCCGTTAGTCTAAAACCACCTCCTAAGATTGAGCGCAACCAGTCATTTGATGACGATG 1320 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 ATGATGACTTTTCAAACAAGCCTGTTGCAAAGAAAAGTAATTCAGCATCAGTAAAAGCAA 1380 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CAGTTTATTCAGTTGCAGACCTACAGATGGCAACAGATAGTTTCAACATGGACAATCTTG 1440 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAGTGATGGAAAGGTACTAG 1500 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CTGTCAAGAAACTAAACAGTACTGTGTTGCCAAGCCAATCTTCAGACGATTTCTTTGACT 1560 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGGTGTCAAACATTTCAAAGTTGCACCATCCCAATCTCAATGAGCTTGTGGGCTATTGCA 1620 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGGAGCATGGACAGCACTTGCTAGTTTATGATTTCCACAGAAATGGTTCGCTGCATGATA 1680 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGCTTCACCTCCCAGATGAATATAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTG 1740 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 CGTTAGGTTCTGCACGGGCACTAGAGTATCTTCATGAAATTTGTTCTCCTTCTATTATCC 1800 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 ACAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTG 1860 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 ATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTG 1920 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 GATATAGTGCCCCTGAAGTTGACATGACTGGGCAGTATACCCTCAAGAGTGATGTTTATA 1980 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 GCTTTGGAGTTGTCATGCTGGAGCTCTTGACAGGCCGCAAACCATTTGACAGCGCTAGAC 2040 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TCCGGACAGAGCAGTCACTTGTCCGGTGGGCAACGCCCCAGCTGCATGACATCGATGCGT 2100 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGCCAAATCCCTGTCCCGTT 2160 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TCGCAGACGTCATTGCGCTGTGTGTCCAGCCTGAGCCGGAGTTCAGACCGCCGATGTCTG 2220 consensus_15475#1 --------------------------------------------------CCGATGTCTG 10 consensus_15475#2 -------------------------------------------------CCAGATGAATA 11 * **** * consensus_15475#0 AGGTGGTGCAAGC-GCTGGTCCGCCT-TGTTCAGA--------GGGCCAACATGACTAGG 2270 consensus_15475#1 ANGTGGTGCAAGC-GCTGGTCCGCCT-TGTTCAGN--------GGGCCAACATGACTAGG 60 consensus_15475#2 TAGCAAACCACTCAGCTGGAATTCTCGTGTTAAGATTGCGTTAGGTTCTGCACGGGCACT 71 * ** * ***** * **** ** ** * ** * * consensus_15475#0 AGAATGATCGACGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTG 2330 consensus_15475#1 AGAATGATCGNCGGCGAAGAGGGTTCTCGAAGACCAGATGACCAGGACCAGGAGTTCGTG 120 consensus_15475#2 AGAGT-ATCTTCA-TGAAATTTGTTCTCCTTCTATTATCCACAAGAACTTCAAGT-CATC 128 *** * *** * *** ****** ** ** ** *** * * consensus_15475#0 TAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCT-CTGG---TGACTGT 2386 consensus_15475#1 TAACATGTTGAGACAGATCTTGTGTTGAACCTGCATCCTATCTCT-CTGG---TGACTGT 176 consensus_15475#2 TAATATCTTGC--TGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGC 186 *** ** *** ** * *** ** * *** * * **** ** * * consensus_15475#0 AATATGTTTGGTTCCTAGAACCTGA-TGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAA 2445 consensus_15475#1 AATATGTTTGGTTCCTAGAACCTGA-TGCAGATGGGGAAAGGGGAAAAATGGAGGGGGAA 235 consensus_15475#2 AGTGTTCCTGATTCTGAATTCCAGGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAA 246 * * * ** *** * ** * * ***** ** *** * * * *** consensus_15475#0 ATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTA 2505 consensus_15475#1 ATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTA 295 consensus_15475#2 GT--TGA---CATGACTGGGCAGTATACCCTCAAGAGTGTTGTCTCAAAAAAAAAAA--- 298 * *** *** ***** * *** ** ******* * ** *** consensus_15475#0 CAAGTTTGGCTGCTTCATGCCTAATGATATCAAAAAACTCATATCTGAAGCTATGTTGCA 2565 consensus_15475#1 CAAGTTTGGCTGCTTCATGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 348 consensus_15475#2 ----------------------AAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 325 ** * * ****** * * ** consensus_15475#0 GTGATATCGATCCAATTTACAGTCTGGTAGATTCTTAAAAGTTTATATACTAAAATTAGT 2625 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 TGCATGATATATACTATTTTCTTTGTAAAAAAAAAAGCCACAGTTGAATATACTCTTGTA 2685 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 AACATAATTTCTTTACAGAGTTTTCCATATGCTATACTACTATAATTGATTGAGAACAAA 2745 consensus_15475#1 ------------------------------------------------------------ consensus_15475#2 ------------------------------------------------------------ consensus_15475#0 AAAAAAA 2752 consensus_15475#1 ------- consensus_15475#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||