cluster # 1548

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Oryza sativa
cluster # 1548 cluster # 1548 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1548#0 length = 804 sequences # 1

consensus_1548#1 length = 729 sequences # 1

consensusID : consensus_1548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 804
fasta sequence

                              [TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATCTACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACACACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCCTCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTACCATCTAATTGAGCAAATATAATCC]

[+] EMBL CB643044             [TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATCTACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACACACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCCTCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTACCATCTAATTGAGCAAATATAATCC]




>consensus_1548#0
TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATC
TACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACA
CACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCC
TCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAG
AGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATT
CTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTG
TGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCG
ATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTA
CATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTC
TCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGC
TTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTT
ATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAG
AGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTAC
CATCTAATTGAGCAAATATAATCC

consensusID : consensus_1548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [ACTTACGTTGTCGTCGTCGATCATCTGATCACCATGTACGACGCCGTCGCCTGCGTCGTCGCCGTCGTCGTCGTCGTCGTCTTCGCCATGCTTTGGGTGAAGCTGGCGAGGAGTGGTGATGGTGGTGGTGGTGGTAGTGGTGGCGTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACCAAAG]

[+] EMBL CB643043             [ACTTACGTTGTCGTCGTCGATCATCTGATCACCATGTACGACGCCGTCGCCTGCGTCGTCGCCGTCGTCGTCGTCGTCGTCTTCGCCATGCTTTGGGTGAAGCTGGCGAGGAGTGGTGATGGTGGTGGTGGTGGTAGTGGTGGCGTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACCAAAG]




>consensus_1548#1
ACTTACGTTGTCGTCGTCGATCATCTGATCACCATGTACGACGCCGTCGCCTGCGTCGTC
GCCGTCGTCGTCGTCGTCGTCTTCGCCATGCTTTGGGTGAAGCTGGCGAGGAGTGGTGAT
GGTGGTGGTGGTGGTAGTGGTGGCGTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAG
GGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTG
CGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTA
TGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCAT
CCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTG
GAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTA
CCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACA
AATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCT
TTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCG
ATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATA
CTACCAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1548#0      TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATC 60
consensus_1548#1      -------------------------------ACTTACGTTGTCGTCGTCGATCATCTGAT 29
                                                     * * *  *** *  *     * ** *   

consensus_1548#0      TACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACA 120
consensus_1548#1      CACCATGTACGACGCCGTCGC-CTGCGTCGTCGCCGTCGTCGTCGTCGTCGTCTTCGCCA 88
                       **       * * *  ** * **   **  *         *  **       * *  **

consensus_1548#0      CACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCC 180
consensus_1548#1      TGCTTTGGGTGAAGCTGGCGAGGAGTGGTGATGGTGGTGGTGGTGGTAGTGGTGGC---- 144
                        *   ** **  *  ** *  **  *    *  *  *   *  **   **         

consensus_1548#0      TCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAG 240
consensus_1548#1      -GTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAG 203
                        ** * *****************************************************

consensus_1548#0      AGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATT 300
consensus_1548#1      AGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATT 263
                      **************** *******************************************

consensus_1548#0      CTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTG 360
consensus_1548#1      CTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTG 323
                      ************************************************************

consensus_1548#0      TGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCG 420
consensus_1548#1      TGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCG 383
                      ************************************************************

consensus_1548#0      ATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTA 480
consensus_1548#1      ATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTA 443
                      ************************************************************

consensus_1548#0      CATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTC 540
consensus_1548#1      CATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTC 503
                      ************************************************************

consensus_1548#0      TCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGC 600
consensus_1548#1      TCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGC 563
                      ************************************************************

consensus_1548#0      TTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTT 660
consensus_1548#1      TTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTT 623
                      ************************************************************

consensus_1548#0      ATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAG 720
consensus_1548#1      ATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAG 683
                      ************************************************************

consensus_1548#0      AGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTAC 780
consensus_1548#1      AGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACCAAAG-------------- 729
                      ***************************************** **                

consensus_1548#0      CATCTAATTGAGCAAATATAATCC 804
consensus_1548#1      ------------------------