These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1046 fasta sequence [GGAAAATCTCCCATCTCTGTCTCCTCCGCTCCGCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT-GAGAACAAACCTA-AAGGTGGTA-GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC-TTGA-GGGGGAAGAAAGGAGCGAGGCTC-GGGGACACTATAA-TTGGATC-TGT-CAAGGAAGCACAG-CCTCGT-GGTAAGG-TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG-CGAGAT-CCA-GTTTGATGACAACG-CGATT-GTCCTTGTGAACAAC-AAAGGCGAG-CTGATTGGCACTCGT-GTATTTGGTCCTGTT-CCCCACGAACTCAGGAAAAAGAAGCATC-TCAAG-ATCCTAGCGTTAGCGGAACACATAG-TTTGAGATGCTTACATACCTGG--CAACCT-ACCT-GTT-AGTTCT-GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC-AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331087 [GGAAAATCTCCCATCTCTGTCTCCTCCGCTCCGCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAG ] [+] EMBL CF316528 [ CCCATCTCTGTCTCCTCCGCTCCGATCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCATAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGCCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGATAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACGAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGC ] [+] EMBL CF329017 [ CATCTCTGTCTCCTCCGCTCCGCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA T ] [+] EMBL CF331747 [ gagtagaaaCTCCTTCGCTCCGCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT C ] [+] EMBL AK059735 [ TCCTCCGCTCCGCTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT CCA GTTTGATGACAACG CGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGG ] [+] EMBL AK098937 [ CTCCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT CCA GTTTGATGACAACG CGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGG ] [+] EMBL AK104805 [ CCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT CCA GTTTGATGACAACG CGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTG ] [+] EMBL CF319052 [ CCGCTCCTTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT CCA GTTTGATGACAACG CGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATCGGCACTCGT GTA ] [+] EMBL OSR01211A [ TTGCGCCGCCAAGACGAGTCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACNATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGAGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAACTCAGAACATTAATCCAGNT GAGAACAAACCTACAAGGTGGTAGGCCAACTCTGGTGCCAAG ] [+] EMBL OSC09962A [ GCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCTCCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGGGTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGATNGAGNACAAACCTA AAGGTGGTA GACAACT ] [+] EMBL AU058339 [ AGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGAT GAGAACAAACCTA AAGGTGGTA GACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTTGAGGGGGGAAGAAAGGAGCGAGGCTCGGGGGACACTATAATTTGGATCTTGTCCAAGGAAGCACAG CTCCTGGGTAAGGTTGAA ] [-] EMBL CF331746 [ GTGCATCCAGTCC TTGA GGGGGAAGAAAGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAGCCCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT CCA GTTTGATGACAACG CGATTGGTCCTTGTGAACAACAAAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAAaaa ] [-] EMBL CF331088 [ AGGAGCGAGGCTC GGGGACACTATAA TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG CGAGAT CCA GTTTGATGACAACG CGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCCAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAaaa ] [+] EMBL CB096970 [ A TTGGATC TGT CAAGGAAGCACAG CCTCGT GGTAAGG TGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAG TGAGAT CCA GTTTGATGACAACG CGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG GTCCTAGCGTTAGCGGAACACATAG TTTGAGATGTTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTT ] [+] EMBL AU166192 [ ACGCAACGATGGCAGCCGAGATCCCAGGTTTGATGACAACGCCGATT GTCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGTGGTATTTGGTCCTGTTCCCCCACGAACTCAGGAAAAAGAAGCATCTTCAAGNATCCTAGCGTTAGCGGAACACATAGTTTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCAAAAAAAA ] [+] EMBL AU181754 [ TCCTTGTGAACAAC AAAGGCGAG CTGATTGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCATGTGTTAAAAAAA ] [-] EMBL CF319053 [ ACAAC AAAGGCGAGTCTGATCGGCACTCGT GTATTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG ATCCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAaaaa ] [+] EMBL AU081355 [ TTTGGTCCTGTT CCCCACGAACTCAGGAAAAAGAAGCATC TCAAG AACCTAGCGTTAGCGGAACACATAG TTTGAGATGCTTACATACCTGG CAACCT ACCT GTT AGTTCT GCAGAATGAAATGAGCATGGTGCTGTCTCAAGAGTATTCCACCGTTGTTTTGATC AGTTCTGTTTGCAATAATGTACCCTCAAAAGATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99590 [ caATACCTGGGCCAACCTCACCTCGTTNAGTTCTGGCAGATTGAANCGAGCATGGTGCTGTCTCAAGAGTATCCCACCGTTGTTTTNATCTAGTTCTGTTTGCAATAATGTACCCTCAAAAGATNAAATGAGCTGATNCCCTGCAGTCAGTCCTAGACAAATCAGATNCTGTACTACTATTTAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCATGTGTTAAAAAAAAAAAAAAAAAA ] [+] EMBL C98189 [ GTGCTGTNTCAAGAGTATNCCACCGTTGTTTTGATC AGTTCTGTTTGNAATAATGTACCCTCAAANGATTNAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATTNAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTTGTTAAACCTGNAACTGNAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCAAAAAAA ] consensusID : consensus_15483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GNNTNNGNNANTNCGCGTNANTNCTNTNTNTAGGCCAGAANTCCANGAACATTCATCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGATTGTCCTTGTGACAACAAAGGCGACTTATTTGACTCGTGTATTTTGTCCTGTTCCCACGGACTCAGGAAAAGAGNATTTAAGTCCTAGCTNGGGGAACAATAGTTTAGATNTTCATACCTGGAACTNCTTTAG] [+] EMBL AU197317 [GNNTNNGNNANTNCGCGTNANTNCTNTNTNTAGGCCAGAANTCCANGAACATTCATCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGATTGTCCTTGTGACAACAAAGGCGACTTATTTGACTCGTGTATTTTGTCCTGTTCCCACGGACTCAGGAAAAGAGNATTTAAGTCCTAGCTNGGGGAACAATAGTTTAGATNTTCATACCTGGAACTNCTTTAG] consensusID : consensus_15483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [NNTNNGNATTCCNCTTGAGTCCATNTNTNCANGCCANAANTCNANGANACANTTCATTCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGCGNAACGATGGAGCGAGTCCAGTTTTATGCAACGCNTTGTCCTTGTGACAACAAAGNCGACTGATTGGACTCGTGTATTTGGCCTGTTCCCACGACTCAGGAAAAGAGATNTAAGTCCTAGCGTNGGGACA] [+] EMBL AU094697 [NNTNNGNATTCCNCTTGAGTCCATNTNTNCANGCCANAANTCNANGANACANTTCATTCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGCGNAACGATGGAGCGAGTCCAGTTTTATGCAACGCNTTGTCCTTGTGACAACAAAGNCGACTGATTGGACTCGTGTATTTGGCCTGTTCCCACGACTCAGGAAAAGAGATNTAAGTCCTAGCGTNGGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 GGAAAATCTCCCATCTCTGTCTCCTCCGCTCCGCTCCGCTCCTTGCGCCGCCAAGACGAG 60 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 TCGCGGCTGAACATAACAGGGGAGGGGCGGCGATCTCCCTCTCCATCTCCATCTCCATCT 120 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 CCATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTCACCTGGAAAGTGTGG 180 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 GTAAAGCGCAGGGCAACAAGAAATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGG 240 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 ACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGA 300 consensus_15483#1 -GNNTNNGNNANTNCGCGTNANTNC-TNTNTNTAGGCCAGAANTCCANGAAC--ATTCAT 56 consensus_15483#2 ---NNTNNGNATTCCNCTTGAGTCCATNTNTNCANGCCANAANTCNANGANACANTTCAT 57 consensus_15483#0 AACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACA---TTCAT 357 * * * * * * ** * * * ***** consensus_15483#1 -CCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCA 115 consensus_15483#2 TCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCA 117 consensus_15483#0 -CCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCA 416 *********************************************************** consensus_15483#1 TCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCA 175 consensus_15483#2 TCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCA 177 consensus_15483#0 TCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCA 476 ************************************************************ consensus_15483#1 AGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCC 235 consensus_15483#2 AGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCC 237 consensus_15483#0 AGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCC 536 ************************************************************ consensus_15483#1 GTGCTGCTATGAAGCGAGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGA 295 consensus_15483#2 GTGCTGCTATGAAGCGAGG-CGNAACGATGG-AGCGAG-TCCAGTTTTATG-CAACGCN- 292 consensus_15483#0 GTGCTGCTATGAAGCGAGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGA 596 ******************* ** ******** ****** ******** *** ****** consensus_15483#1 TTGTCCTTGTGA-CAACAAAGGCGA-CTTATTTG-ACTCGTGTATTTTGTCCTGTTCCC- 351 consensus_15483#2 TTGTCCTTGTGA-CAACAAAGNCGA-CTGATTGG-ACTCGTGTATTTGG-CCTGTTCCC- 347 consensus_15483#0 TTGTCCTTGTGAACAACAAAGGCGAGCTGATTGGCACTCGTGTATTTGGTCCTGTTCCCC 656 ************ ******** *** ** *** * ************ * ********* consensus_15483#1 ACGGACTCAGGAAAAGAGNA----TTTAAGTCCTAGCTNGGG--GAACA-ATAGTTTAGA 404 consensus_15483#2 ACG-ACTCAGGAAAAGAGA-----TNTAAGTCCTAGCGTNGG--GA-CA----------- 387 consensus_15483#0 ACGAACTCAGGAAAAAGAAGCATCTCAAGATCCTAGCGTTAGCGGAACACATAGTTTGAG 716 *** *********** * * ******* * ** ** consensus_15483#1 ---TNTTCATACCTGGAACTNCTTTAG--------------------------------- 428 consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 ATGCTTACATACCTGGCAACCTACCTGTTAGTTCTGCAGAATGAAATGAGCATGGTGCTG 776 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 TCTCAAGAGTATTCCACCGTTGTTTTGATCAGTTCTGTTTGCAATAATGTACCCTCAAAA 836 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 GATTAAATGAGCTGATGCCCTGCAGTCAGTCCTAGACAAATCAGATTCTGTACTACTATT 896 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 TAACCTCTGTAGTATTGCATTCCATTCAGATGGAAACGCATACATTGCTTATGTTCTCTT 956 consensus_15483#1 ------------------------------------------------------------ consensus_15483#2 ------------------------------------------------------------ consensus_15483#0 GTTAAACCTGAAACTGCAACTGAACTCTTGTGCTTTCTGATCTCAAAGTGTTTCGGTTCA 1016 consensus_15483#1 ------------------------------ consensus_15483#2 ------------------------------ consensus_15483#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1046 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||