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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1755 fasta sequence
[TAGAGTCCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA-GGGGGCATACTGATTCAGTCACAGCACTTCA-TTTCTCCGAT-GATG-CCTGCAACCT-GGCCACCG-TATGTGCGGATGGAG-CTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTCTGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCATCATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATGTTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG-TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATAAAGTTATGCAACTTAA-GGGTCACAAAAGCGC-TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA-CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA-CATGAGTGTATCTCCTGA-TGAGAAAGTTCTGGCCACGACAAGTGGA-TCAACGCTGCAATGGTTATGTGTGG-AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA-TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG-AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA-CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA----AAAAAAAAAAAGAAAAAAA]
[+] EMBL AK102968 [TAGAGTAGCACACAAACCAAACCCAATTTTACCCTAAACCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCAGTCACAGCACTTCA TTTCTCCGAT GATG CCTGCAACCT GGCCACCG TATGTGCGGATGGAG CTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTCTGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCATCATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATGTTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGT ]
[+] EMBL C26088 [ CCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTNTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGNCCATCTNCCCNCTTCCGCCACCGCNGCCGCCCCGGACCAGNCCAAGCAAGTTCGACCATCCAACCAGAACCAGNCTAAGAAGGGACACCAGCGATCTCACCACGACGTCGATAAGGNCGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCATTCACAGCACTTCA TTTCTCCGAT GATG CCTGNAAACT GGGCACCG TATGTGCGGATGGAGNTTTTAAGAGT ]
[+] EMBL D85552 [ CCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTNTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGNCCATCTNCCCNCTTCCGCCACCGCNGCCGCCCCGGACCAGNCCAAGCAAGTTCGACCATCCAACCAGAACCAGNCTAAGAAGGGACACCAGCGATCTCACCACGACGTCGATAAGGNCGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCATTCACAGCACTTCA TTTCTCCGAT GATG CCTGNAAACT GGGCACCG TATGTGCGGATGGAGNTTTTAAGAGT ]
[+] EMBL OSS11416A [ AGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTNACCACGTCGTNGNTAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTTATTCAGTCACAGCACTTCA TTTCTNCGAT GATG CCTG AAACT GGg ]
[+] EMBL AU162272 [ GGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCNGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGATGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGAGGGGGGCATACTGATTCAGTCACAGCACTTCATTTTCTCCGATNGATGNCCTGCAACCTNGGCCACCGTTATGT ]
[+] EMBL CB666406 [ CCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCAGTCACAGCACTTCA TTTCTCCGAT GATG CCTGCAACCT GGCCACCG TATGTGCGGATGGAG CTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTCTGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCATCATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATGTTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGA ]
[+] EMBL AU032127 [ TCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAG TCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTGTTGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGG CAATAAAGTTATGCAACTTAAGGGGTCACAAAAGCGCTTGTTACTTGCCTGTGTTTCGCTCT AATTCTGNGC ]
[+] EMBL C73368 [ CCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCANTAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTNTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGATTGAGAAAGTTCTGGCCACGACAAGTGGANTCAACGCTGCAATGGTTATGTGTGG AACTGGTGCAGTTCTTGATACAGCTGTGAAAGCACATGAAGGTGATATTACCTGGNATTGCCT ]
[-] EMBL CB666950 [ TAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAAAAAAAgg ]
[-] EMBL CB666407 [ AAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAC CTAGGGGGTAACTTATCGAGTTCTCT ]
[-] EMBL CB666949 [ ACAGCTTCCAAAGAAGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGAGGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCCGAAAG AGg ]
[+] EMBL AU097564 [ AAAGATGGTAC ATTCGAGTATGGAACATTAATGTAAGGTACCCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCACCATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTACTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCAaaaaaaa ]
[+] EMBL AU095888 [ ATGGTACAATTCGAGTATGGAACATTAATGTAAGNTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAAA ]
[+] EMBL AU094284 [ cATTCGAGTATGGANCATTAATGTAAGGTA CCATCTTGATGAAGACCNTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAA ]
[+] EMBL BI796559 [ aATGTGTGGAAAACTGGTGCAGTTCTTGATACA CTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAAC ATTCC AATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACCAAAAGGTGAA CTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGCGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTGACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCAC ATTTTCCCTTTTCTTGTTAGAAC AAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAaaaa ]
[+] EMBL BI810792 [ TGTGG AAACTGGTCCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGCCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGAC AAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGC CAGATTCGGCGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTGACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGAC CTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCAC ATTTTCCCTTTTCTTGTTAGAAC AAAGAAACTAGAGTGGAACCTTGGAAGTAACTaaaaaa ]
[+] EMBL AU161883 [ AGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTNGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTNTGGGCACTGAAGGAAGNGAANAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAAAAAAAA ]
[+] EMBL AU029581 [ ACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCC AATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATGAAGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCAaaaaaaa ]
[+] EMBL AU184707 [ CCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTAaaaa ]
[+] EMBL CF310674 [ TCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTACTCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK058362 [ GATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCA ]
consensusID : consensus_15497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[GATACAGCTGAGAAAGCACATGAAGGTGGATGATATACTGGCATTGCCTGGGCTGCACTACGAACATATTGCCAAATGGGTGGGAACTGCCTGGCTTGTTGGTGTTTGAGCGACTGGCTGGGAGTGGGACCAAAATAGGTGGAAGCTGGTGGGTGTGAGCTGCCTGAAGGCTGATGTGTGCTAACCTGGAATGAGTGGTGGGTTGGGATGCCTGGGTGCACCCTCTACAGCGCAGATGTCGGCGTGGGGCACCTGAAGGAAGAGAATAAATAACGATGGATAAGATAATGGCAGATGATGTTGCTTGGAGTTGGAGTGCCTGGACTGGACGGGAGTGCGTGCAAACATGAACATGCAGAGAGAGTTTGTGAAGGGGAGACACCTGCACTGTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTCTGCTCACCAAAAAAAAAA]
[+] EMBL BQ907857 [GATACAGCTGAGAAAGCACATGAAGGTGGATGATATACTGGCATTGCCTGGGCTGCACTACGAACATATTGCCAAATGGGTGGGAACTGCCTGGCTTGTTGGTGTTTGAGCGACTGGCTGGGAGTGGGACCAAAATAGGTGGAAGCTGGTGGGTGTGAGCTGCCTGAAGGCTGATGTGTGCTAACCTGGAATGAGTGGTGGGTTGGGATGCCTGGGTGCACCCTCTACAGCGCAGATGTCGGCGTGGGGCACCTGAAGGAAGAGAATAAATAACGATGGATAAGATAATGGCAGATGATGTTGCTTGGAGTTGGAGTGCCTGGACTGGACGGGAGTGCGTGCAAACATGAACATGCAGAGAGAGTTTGTGAAGGGGAGACACCTGCACTGTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTCTGCTCACCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15497#0 TAGAGTCCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAG 60
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 AGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCT 120
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGC 180
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 GCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGC 240
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 AAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCG 300
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 TCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGAGGGGGCATA 360
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CTGATTCAGTCACAGCACTTCATTTCTCCGATGATGCCTGCAACCTGGCCACCGTATGTG 420
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CGGATGGAGCTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTC 480
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 TGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCAT 540
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATG 600
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 TTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAA 660
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 AGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTG 720
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATA 780
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 TCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGA 840
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 AAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAG 900
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CTGATGTCAAGGTGTGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATA 960
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 AAGTTATGCAACTTAAGGGTCACAAAAGCGCTGTTACTTGCCTGTGTTTCGCTCTGAATT 1020
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAA 1080
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 GGTACCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATT 1140
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CAAAAGGTTCTGTTTGCCAGTATGATCACATGAGTGTATCTCCTGATGAGAAAGTTCTGG 1200
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 CCACGACAAGTGGATCAACGCTGCAATGGTTATGTGTGGAAACTGGTGCAGTTCTTGATA 1260
consensus_15497#1 --------------------------------------------------------GATA 4
****
consensus_15497#0 CAGCTGAGAAAGCACATGAAGGTGAT--ATA-ACTGGCATTGCCTGGGCT---CCACGAA 1314
consensus_15497#1 CAGCTGAGAAAGCACATGAAGGTGGATGATATACTGGCATTGCCTGGGCTGCACTACGAA 64
************************ *** ****************** * *****
consensus_15497#0 CA-ATT-CCAAATGGT--GGAACT------CCTGCTTTTGTTTTAGCGACTGCT--GGAG 1362
consensus_15497#1 CATATTGCCAAATGGGTGGGAACTGCCTGGCTTGTTGGTGTTTGAGCGACTGGCTGGGAG 124
** *** ******** ****** * ** * ***** ******** ****
consensus_15497#0 TGGA--CAAAA-AGGTG-AAGCTG-TGGTT---AGCTCCT--AAGGCTATT-----TCAA 1407
consensus_15497#1 TGGGACCAAAATAGGTGGAAGCTGGTGGGTGTGAGCTGCCTGAAGGCTGATGTGTGCTAA 184
*** ***** ***** ****** *** * **** * ****** * **
consensus_15497#0 CCTG-AATGAGTGT--GGTTGGAT--CCTGGT--CACCCTCTACAGCGCAGAT-TCGGTG 1459
consensus_15497#1 CCTGGAATGAGTGGTGGGTTGGGATGCCTGGGTGCACCCTCTACAGCGCAGATGTCGGCG 244
**** ******** ****** ***** ******************* **** *
consensus_15497#0 TGGG-CAC-TGAAGGAAGAGAAAAAA--ACGATGAA--AGATAATG-CAGAT-ATGTTGC 1511
consensus_15497#1 TGGGGCACCTGAAGGAAGAGAATAAATAACGATGGATAAGATAATGGCAGATGATGTTGC 304
**** *** ************* *** ****** * ******** ***** *******
consensus_15497#0 TTG-AGTTG-AGTCCTT--ACTG-ACGGGAGT-CGT-CAAACAT-AACATGCAGAGAGAG 1563
consensus_15497#1 TTGGAGTTGGAGTGCCTGGACTGGACGGGAGTGCGTGCAAACATGAACATGCAGAGAGAG 364
*** ***** *** * * **** ******** *** ******* ***************
consensus_15497#0 TTTGTGAAGGGGAGACAC-TGCACT-TTTCTCTAAATACATATCTGTCAACATTTTGGAA 1621
consensus_15497#1 TTTGTGAAGGGGAGACACCTGCACTGTTTCTCTAAATACATATCTGTCAACATTTTGGAA 424
****************** ****** **********************************
consensus_15497#0 ATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTG 1681
consensus_15497#1 ATAGGTTGCCT-CTGCTCACCAAAAAAAAAA----------------------------- 454
*********** ******** *
consensus_15497#0 GAACTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTAAAAAA 1741
consensus_15497#1 ------------------------------------------------------------
consensus_15497#0 AAAAAAGAAAAAAA 1755
consensus_15497#1 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||