These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1755 fasta sequence [TAGAGTCCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA-GGGGGCATACTGATTCAGTCACAGCACTTCA-TTTCTCCGAT-GATG-CCTGCAACCT-GGCCACCG-TATGTGCGGATGGAG-CTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTCTGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCATCATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATGTTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG-TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATAAAGTTATGCAACTTAA-GGGTCACAAAAGCGC-TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA-CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA-CATGAGTGTATCTCCTGA-TGAGAAAGTTCTGGCCACGACAAGTGGA-TCAACGCTGCAATGGTTATGTGTGG-AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA-TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG-AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA-CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA----AAAAAAAAAAAGAAAAAAA] [+] EMBL AK102968 [TAGAGTAGCACACAAACCAAACCCAATTTTACCCTAAACCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCAGTCACAGCACTTCA TTTCTCCGAT GATG CCTGCAACCT GGCCACCG TATGTGCGGATGGAG CTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTCTGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCATCATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATGTTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGT ] [+] EMBL C26088 [ CCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTNTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGNCCATCTNCCCNCTTCCGCCACCGCNGCCGCCCCGGACCAGNCCAAGCAAGTTCGACCATCCAACCAGAACCAGNCTAAGAAGGGACACCAGCGATCTCACCACGACGTCGATAAGGNCGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCATTCACAGCACTTCA TTTCTCCGAT GATG CCTGNAAACT GGGCACCG TATGTGCGGATGGAGNTTTTAAGAGT ] [+] EMBL D85552 [ CCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAGAGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTNTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGNCCATCTNCCCNCTTCCGCCACCGCNGCCGCCCCGGACCAGNCCAAGCAAGTTCGACCATCCAACCAGAACCAGNCTAAGAAGGGACACCAGCGATCTCACCACGACGTCGATAAGGNCGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCATTCACAGCACTTCA TTTCTCCGAT GATG CCTGNAAACT GGGCACCG TATGTGCGGATGGAGNTTTTAAGAGT ] [+] EMBL OSS11416A [ AGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTNACCACGTCGTNGNTAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTTATTCAGTCACAGCACTTCA TTTCTNCGAT GATG CCTG AAACT GGg ] [+] EMBL AU162272 [ GGCGAGTCTGGTGTCCCTGCCCCTCCTCTCGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGCGCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCNGCCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGATGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGAGGGGGGCATACTGATTCAGTCACAGCACTTCATTTTCTCCGATNGATGNCCTGCAACCTNGGCCACCGTTATGT ] [+] EMBL CB666406 [ CCCCGGACCAGCCCAAGCAAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCGTCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGA GGGGGCATACTGATTCAGTCACAGCACTTCA TTTCTCCGAT GATG CCTGCAACCT GGCCACCG TATGTGCGGATGGAG CTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTCTGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCATCATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATGTTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGA ] [+] EMBL AU032127 [ TCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAAAGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAG TCGTGCAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATATCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGAAAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTGTTGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGG CAATAAAGTTATGCAACTTAAGGGGTCACAAAAGCGCTTGTTACTTGCCTGTGTTTCGCTCT AATTCTGNGC ] [+] EMBL C73368 [ CCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAGCTGATGTCAAGGTG TGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCANTAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTNTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGATTGAGAAAGTTCTGGCCACGACAAGTGGANTCAACGCTGCAATGGTTATGTGTGG AACTGGTGCAGTTCTTGATACAGCTGTGAAAGCACATGAAGGTGATATTACCTGGNATTGCCT ] [-] EMBL CB666950 [ TAAAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAAAAAAAgg ] [-] EMBL CB666407 [ AAGTTATGCAACTTAA GGGTCACAAAAGCGC TGTTACTTGCCTGTGTTTCGCTCTGAATTCTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAC CTAGGGGGTAACTTATCGAGTTCTCT ] [-] EMBL CB666949 [ ACAGCTTCCAAAGAAGGTACAATTCGAGTATGGAACATTAATGTAAGGTA CCATCTTGAGGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCCGAAAG AGg ] [+] EMBL AU097564 [ AAAGATGGTAC ATTCGAGTATGGAACATTAATGTAAGGTACCCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCACCATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTACTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCAaaaaaaa ] [+] EMBL AU095888 [ ATGGTACAATTCGAGTATGGAACATTAATGTAAGNTA CCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAAA ] [+] EMBL AU094284 [ cATTCGAGTATGGANCATTAATGTAAGGTA CCATCTTGATGAAGACCNTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATTCAAAAGGTTCTGTTTGCCAGTATGATCA CATGAGTGTATCTCCTGA TGAGAAAGTTCTGGCCACGACAAGTGGA TCAACGCTGCAATGGTTATGTGTGG AAACTGGTGCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAA ] [+] EMBL BI796559 [ aATGTGTGGAAAACTGGTGCAGTTCTTGATACA CTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAAC ATTCC AATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACCAAAAGGTGAA CTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGCGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTGACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCAC ATTTTCCCTTTTCTTGTTAGAAC AAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAaaaa ] [+] EMBL BI810792 [ TGTGG AAACTGGTCCAGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGCCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGAC AAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGC CAGATTCGGCGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTGACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGAC CTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCAC ATTTTCCCTTTTCTTGTTAGAAC AAAGAAACTAGAGTGGAACCTTGGAAGTAACTaaaaaa ] [+] EMBL AU161883 [ AGTTCTTGATACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTNGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTNTGGGCACTGAAGGAAGNGAANAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTA AAAAAAAAAAA ] [+] EMBL AU029581 [ ACAGCTGAGAAAGCACATGAAGGTGATA TAACTGGCATTGCCTGGGCTCCACGAACAATTCC AATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATGAAGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCAaaaaaaa ] [+] EMBL AU184707 [ CCTGGGCTCCACGAACAATTCCAAATGGTGGAACTCCTGCTTTTGTTTTAGCGACTGCTGGAGTGGACAAAAAGGTGAAGCTGTGGTTAGCTCCTAAGGCTATTTCAACCTGAATG AGTGTGGTTGGATCCTGGTCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTAaaaa ] [+] EMBL CF310674 [ TCACCCTCTACAGCGCAGATTCGGTGTGGGCACTGAAGGAAGAGAAAAAAACGATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTACTCCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK058362 [ GATGAAAGATAATGCAGATATGTTGCTTGAGTTGAGTCCTTACTGACGGGAGTCGTCAAACATAACATGCAGAGAGAGTTTGTGAAGGGGAGACACTGCACTTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTGGAA CTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCA ] consensusID : consensus_15497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GATACAGCTGAGAAAGCACATGAAGGTGGATGATATACTGGCATTGCCTGGGCTGCACTACGAACATATTGCCAAATGGGTGGGAACTGCCTGGCTTGTTGGTGTTTGAGCGACTGGCTGGGAGTGGGACCAAAATAGGTGGAAGCTGGTGGGTGTGAGCTGCCTGAAGGCTGATGTGTGCTAACCTGGAATGAGTGGTGGGTTGGGATGCCTGGGTGCACCCTCTACAGCGCAGATGTCGGCGTGGGGCACCTGAAGGAAGAGAATAAATAACGATGGATAAGATAATGGCAGATGATGTTGCTTGGAGTTGGAGTGCCTGGACTGGACGGGAGTGCGTGCAAACATGAACATGCAGAGAGAGTTTGTGAAGGGGAGACACCTGCACTGTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTCTGCTCACCAAAAAAAAAA] [+] EMBL BQ907857 [GATACAGCTGAGAAAGCACATGAAGGTGGATGATATACTGGCATTGCCTGGGCTGCACTACGAACATATTGCCAAATGGGTGGGAACTGCCTGGCTTGTTGGTGTTTGAGCGACTGGCTGGGAGTGGGACCAAAATAGGTGGAAGCTGGTGGGTGTGAGCTGCCTGAAGGCTGATGTGTGCTAACCTGGAATGAGTGGTGGGTTGGGATGCCTGGGTGCACCCTCTACAGCGCAGATGTCGGCGTGGGGCACCTGAAGGAAGAGAATAAATAACGATGGATAAGATAATGGCAGATGATGTTGCTTGGAGTTGGAGTGCCTGGACTGGACGGGAGTGCGTGCAAACATGAACATGCAGAGAGAGTTTGTGAAGGGGAGACACCTGCACTGTTTCTCTAAATACATATCTGTCAACATTTTGGAAATAGGTTGCCTCTGCTCACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15497#0 TAGAGTCCGANCCAAACCAAACCCAATTTTACCCTAAACCCGNGCGAGANAGAGAGAGAG 60 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 AGAGAGAGAGAGAGATCATGGCGGCGGCGGCGGCGAGTCTGGTGTCCCTGCCCCTCCTCT 120 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CGGCCATCTTCGGCGCCGCCATCGCCCTCCTCTTCCTCTCCGGATACCTCCGCCGCAAGC 180 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 GCGCCGCCATCGCCCATCTCCCCCCTTCCGCCACCGCCGCCGCCCCGGACCAGCCCAAGC 240 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 AAGTTCGACCATCCAACCAGAACCAGCCTAAGAAGGGACACCAGCGATCTCACCACGCCG 300 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 TCGATAAGGACGCCGCAAAAAAGCACCATCATCTTGATGTCAACACTTTGAGGGGGCATA 360 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CTGATTCAGTCACAGCACTTCATTTCTCCGATGATGCCTGCAACCTGGCCACCGTATGTG 420 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CGGATGGAGCTGTCAGAGTATTCAGGGTTGATGATGTCTCAAGCAAGAGCTTTAAAATTC 480 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 TGAGGATCAACTTGCCCGCTGGGGCACATCCTACAGCTATTGCTTTCTCACAAGGGGCAT 540 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CATCAGTTGTTGTGGCAGCGCAAGCACTTTTAGGCTCATCTCTCTACATGTATGCGGATG 600 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 TTGGTGCTCCTCCAGCTGGCGGAAACAAACAGCAGGGCAAGCTTTCTCCCCCTGAGATAA 660 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 AGTGGGAACACCGTAAGATTCACGGCAAGGAGTCAGTGCTGAATCTTGCGGCAGCTCGTG 720 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CAACCTATGGGACTGGTGATGGCAGCACAATATTGATTTCTTGCTCTGAAGCAACTGATA 780 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 TCAAAATTTGGCATGGGAAAAGTGGAAAGGAGTTGGGAACAGTCGACACCAATCAATTGA 840 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 AAAATAATATGGCTGATATATCCCCAAATGGCCGTTTCATAGCTGCTGCAGCTTTTACAG 900 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CTGATGTCAAGGTGTGGGAGATTGTTTATTCAAAGGATAGCTCTGTGAAGGAGGTCAATA 960 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 AAGTTATGCAACTTAAGGGTCACAAAAGCGCTGTTACTTGCCTGTGTTTCGCTCTGAATT 1020 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CTGAGCAGATTATTACAGCTTCCAAAGATGGTACAATTCGAGTATGGAACATTAATGTAA 1080 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 GGTACCATCTTGATGAAGACCCTAAAACCTTGAGAGTTTTGCCAATTCCTCTCCATGATT 1140 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CAAAAGGTTCTGTTTGCCAGTATGATCACATGAGTGTATCTCCTGATGAGAAAGTTCTGG 1200 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 CCACGACAAGTGGATCAACGCTGCAATGGTTATGTGTGGAAACTGGTGCAGTTCTTGATA 1260 consensus_15497#1 --------------------------------------------------------GATA 4 **** consensus_15497#0 CAGCTGAGAAAGCACATGAAGGTGAT--ATA-ACTGGCATTGCCTGGGCT---CCACGAA 1314 consensus_15497#1 CAGCTGAGAAAGCACATGAAGGTGGATGATATACTGGCATTGCCTGGGCTGCACTACGAA 64 ************************ *** ****************** * ***** consensus_15497#0 CA-ATT-CCAAATGGT--GGAACT------CCTGCTTTTGTTTTAGCGACTGCT--GGAG 1362 consensus_15497#1 CATATTGCCAAATGGGTGGGAACTGCCTGGCTTGTTGGTGTTTGAGCGACTGGCTGGGAG 124 ** *** ******** ****** * ** * ***** ******** **** consensus_15497#0 TGGA--CAAAA-AGGTG-AAGCTG-TGGTT---AGCTCCT--AAGGCTATT-----TCAA 1407 consensus_15497#1 TGGGACCAAAATAGGTGGAAGCTGGTGGGTGTGAGCTGCCTGAAGGCTGATGTGTGCTAA 184 *** ***** ***** ****** *** * **** * ****** * ** consensus_15497#0 CCTG-AATGAGTGT--GGTTGGAT--CCTGGT--CACCCTCTACAGCGCAGAT-TCGGTG 1459 consensus_15497#1 CCTGGAATGAGTGGTGGGTTGGGATGCCTGGGTGCACCCTCTACAGCGCAGATGTCGGCG 244 **** ******** ****** ***** ******************* **** * consensus_15497#0 TGGG-CAC-TGAAGGAAGAGAAAAAA--ACGATGAA--AGATAATG-CAGAT-ATGTTGC 1511 consensus_15497#1 TGGGGCACCTGAAGGAAGAGAATAAATAACGATGGATAAGATAATGGCAGATGATGTTGC 304 **** *** ************* *** ****** * ******** ***** ******* consensus_15497#0 TTG-AGTTG-AGTCCTT--ACTG-ACGGGAGT-CGT-CAAACAT-AACATGCAGAGAGAG 1563 consensus_15497#1 TTGGAGTTGGAGTGCCTGGACTGGACGGGAGTGCGTGCAAACATGAACATGCAGAGAGAG 364 *** ***** *** * * **** ******** *** ******* *************** consensus_15497#0 TTTGTGAAGGGGAGACAC-TGCACT-TTTCTCTAAATACATATCTGTCAACATTTTGGAA 1621 consensus_15497#1 TTTGTGAAGGGGAGACACCTGCACTGTTTCTCTAAATACATATCTGTCAACATTTTGGAA 424 ****************** ****** ********************************** consensus_15497#0 ATAGGTTGCCTGCTGCTCACAATTTTCCCTTTTCTTGTTAGAACAAAAGAAACTAGAGTG 1681 consensus_15497#1 ATAGGTTGCCT-CTGCTCACCAAAAAAAAAA----------------------------- 454 *********** ******** * consensus_15497#0 GAACTTGGAAGTAACTTATCGAGTTCTCTTGCATTCAGTATGCATATGTTAGTTAAAAAA 1741 consensus_15497#1 ------------------------------------------------------------ consensus_15497#0 AAAAAAGAAAAAAA 1755 consensus_15497#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||