These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1467 fasta sequence [AGGGTGGCAGTTCCTCGAATAAAAAAATGGCGGACAGTAACGCCGGCGGCAACAACAGTAGCGGTGCCGCGAACAACGCCGAGGTCCAGATACCGATCCCAGCTCCATCCAAGGCTGAAGCTGCAGCAGCTCCGGAAACACCAGCAGGCAAGCCATTTCGATGGTGGGCGATGGTGGCAGTGGACGTCTTCTTCCTCATCGCCGGTCAGACATCGGCGACACTGCTGGGCAGATACTACTACACCCAAGGCGGCCGCAGCAAGTGGATATCGGCGTTCGTGCGGACGGCCGGCTTCCCGATACTGTTCTTCACCCTCTTCTTCTTCCCCTCGAAGTCACCGTCCTCCTGCACCAACACTCCCATGGCCAAGCTCGCCGTGATATACATCGTCCTGGGCCTCATCATCGCCGCCGACGACATGATGTACACTGGTGGCCTCAAGTACCTCCCCGCTTCGACCTACTCGCTCATCTGTGCCAGCCAGCTCGCGTTCAATGTCGTTTTCTCATACGTGCTCAACTCCCAGAAGGTCACTCCTCTGATATCCAACTCCGTCGTGCTGCTCACCATGTCCGCTTCGCTCATCGGAGTCAGCAAGGAGTCTCAGGGGGTCACCGGCGTCTCGGGAGGGAAGTATCTGCTCGGTTTCGTGCTGACGCTGGGGGCGTCGTGCACCTACTCGCTGATCCTCGCGCTGATGCAGCTCACCTTCGAGACCATCATCAAGAAGCACACCTTCTCAGCCGTCCTCAACATGCAGATCTACACGGCGCTCGTGGCGACGGCCGCGTCGGTGGTCGGGCTGTTCGCGAGCGGCGAGTGGAGGTCGCTGAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAACATCGGGGTGCTCGGCCTCATCTTCGAGGTGTCGGCGCTCTTCTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTCTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTCGTATCTGTTTCAGCACTATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCACAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTACTAGATGTTCGTTACTTATGTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTACTAGTAGTTTTCTTGTTCTTTTCTTCATGTGCGTTTGTGTAAGGGTATGACGCATAATTGTATATCACGAAAGAATAGAAATAGTAGTACTAGACTAGTAAAGAACTCT] [+] EMBL AK119483 [AGGGTGGCAGTTCCTCGAATAAAAAAATGGCGGACAGTAACGCCGGCGGCAACAACAGTAGCGGTGCCGCGAACAACGCCGAGGTCCAGATACCGATCCCAGCTCCATCCAAGGCTGAAGCTGCAGCAGCTCCGGAAACACCAGCAGGCAAGCCATTTCGATGGTGGGCGATGGTGGCAGTGGACGTCTTCTTCCTCATCGCCGGTCAGACATCGGCGACACTGCTGGGCAGATACTACTACACCCAAGGCGGCCGCAGCAAGTGGATATCGGCGTTCGTGCGGACGGCCGGCTTCCCGATACTGTTCTTCACCCTCTTCTTCTTCCCCTCGAAGTCACCGTCCTCCTGCACCAACACTCCCATGGCCAAGCTCGCCGTGATATACATCGTCCTGGGCCTCATCATCGCCGCCGACGACATGATGTACACTGGTGGCCTCAAGTACCTCCCCGCTTCGACCTACTCGCTCATCTGTGCCAGCCAGCTCGCGTTCAATGTCGTTTTCTCATACGTGCTCAACTCCCAGAAGGTCACTCCTCTGATATCCAACTCCGTCGTGCTGCTCACCATGTCCGCTTCGCTCATCGGAGTCAGCAAGGAGTCTCAGGGGGTCACCGGCGTCTCGGGAGGGAAGTATCTGCTCGGTTTCGTGCTGACGCTGGGGGCGTCGTGCACCTACTCGCTGATCCTCGCGCTGATGCAGCTCACCTTCGAGACCATCATCAAGAAGCACACCTTCTCAGCCGTCCTCAACATGCAGATCTACACGGCGCTCGTGGCGACGGCCGCGTCGGTGGTCGGGCTGTTCGCGAGCGGCGAGTGGAGGTCGCTGAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAACATCGGGGTGCTCGGCCTCATCTTCGAGGTGTCGGCGCTCTTCTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTCTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTCGTATCTGTTTCAGCACTATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCACAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTACTAGATGTTCGTTACTTATGTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTACTAGTAGTTTTCTTGTTCTTTTCTTCATGTGCGTTTGTGTAAGGGTATGACGCATAATTGTATATCACGAAAGAATAGAAATAGTAGTACTAGACTAGTAAAGAACTCT] consensusID : consensus_1550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [AGACAAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAAAATCGGGGTGCTCGGCCTCATTTTCGAGGTGTTGGCGCTCTTTTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTTTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTTGTATCTGTTTCAGCCCCATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCCCAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTGCTAGATGTTCGTTACTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTNCTAGTAAAAAAAAAAAAAAAAA] [-] EMBL CA763521 [AGACAAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAAAATCGGGGTGCTCGGCCTCATTTTCGAGGTGTTGGCGCTCTTTTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTTTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTTGTATCTGTTTCAGCCCCATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCCCAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTGCTAGATGTTCGTTACTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTNCTAGTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1550#0 AGGGTGGCAGTTCCTCGAATAAAAAAATGGCGGACAGTAACGCCGGCGGCAACAACAGTA 60 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 GCGGTGCCGCGAACAACGCCGAGGTCCAGATACCGATCCCAGCTCCATCCAAGGCTGAAG 120 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 CTGCAGCAGCTCCGGAAACACCAGCAGGCAAGCCATTTCGATGGTGGGCGATGGTGGCAG 180 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 TGGACGTCTTCTTCCTCATCGCCGGTCAGACATCGGCGACACTGCTGGGCAGATACTACT 240 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 ACACCCAAGGCGGCCGCAGCAAGTGGATATCGGCGTTCGTGCGGACGGCCGGCTTCCCGA 300 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 TACTGTTCTTCACCCTCTTCTTCTTCCCCTCGAAGTCACCGTCCTCCTGCACCAACACTC 360 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 CCATGGCCAAGCTCGCCGTGATATACATCGTCCTGGGCCTCATCATCGCCGCCGACGACA 420 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 TGATGTACACTGGTGGCCTCAAGTACCTCCCCGCTTCGACCTACTCGCTCATCTGTGCCA 480 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 GCCAGCTCGCGTTCAATGTCGTTTTCTCATACGTGCTCAACTCCCAGAAGGTCACTCCTC 540 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 TGATATCCAACTCCGTCGTGCTGCTCACCATGTCCGCTTCGCTCATCGGAGTCAGCAAGG 600 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 AGTCTCAGGGGGTCACCGGCGTCTCGGGAGGGAAGTATCTGCTCGGTTTCGTGCTGACGC 660 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 TGGGGGCGTCGTGCACCTACTCGCTGATCCTCGCGCTGATGCAGCTCACCTTCGAGACCA 720 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 TCATCAAGAAGCACACCTTCTCAGCCGTCCTCAACATGCAGATCTACACGGCGCTCGTGG 780 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 CGACGGCCGCGTCGGTGGTCGGGCTGTTCGCGAGCGGCGAGTGGAGGTCGCTGAGGGGGG 840 consensus_1550#1 ------------------------------------------------AGACAAGGGGGG 12 * ******* consensus_1550#0 AGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCG 900 consensus_1550#1 AGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCG 72 ************************************************************ consensus_1550#0 TGTCGTGGCAGGTGGCCAACATCGGGGTGCTCGGCCTCATCTTCGAGGTGTCGGCGCTCT 960 consensus_1550#1 TGTCGTGGCAGGTGGCCAAAATCGGGGTGCTCGGCCTCATTTTCGAGGTGTTGGCGCTCT 132 ******************* ******************** ********** ******** consensus_1550#0 TCTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTCTTCGCGGTGGTGGTGT 1020 consensus_1550#1 TTTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTTTTCGCGGTGGTGGTGT 192 * ***************************************** **************** consensus_1550#0 TCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTA 1080 consensus_1550#1 TCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTA 252 ************************************************************ consensus_1550#0 TTTCGTATCTGTTTCAGCACTATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTG 1140 consensus_1550#1 TTTTGTATCTGTTTCAGCCCCATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTG 312 *** ************** * *************************************** consensus_1550#0 ATAGTGCGCAGGGGTGATCAGATTAGGTGGCCACAGTGATATTATCGTGGTAGAGATTGA 1200 consensus_1550#1 ATAGTGCGCAGGGGTGATCAGATTAGGTGGCCCCAGTGATATTATCGTGGTAGAGATTGA 372 ******************************** *************************** consensus_1550#0 TTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTACTAGATGTTCGTTA 1260 consensus_1550#1 TTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTGCTAGATGTTCGTTA 432 ********************************************* ************** consensus_1550#0 CTTATGTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGT 1320 consensus_1550#1 CTTATG-----TTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGT 487 ****** ************************************************* consensus_1550#0 GTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTACTAGTAGTTTTCTTGTTCTTTT 1380 consensus_1550#1 GTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTNCTAGTAAAAAAAAAAAAAAAAA 547 ************************************* ****** consensus_1550#0 CTTCATGTGCGTTTGTGTAAGGGTATGACGCATAATTGTATATCACGAAAGAATAGAAAT 1440 consensus_1550#1 ------------------------------------------------------------ consensus_1550#0 AGTAGTACTAGACTAGTAAAGAACTCT 1467 consensus_1550#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||