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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1467 fasta sequence
[AGGGTGGCAGTTCCTCGAATAAAAAAATGGCGGACAGTAACGCCGGCGGCAACAACAGTAGCGGTGCCGCGAACAACGCCGAGGTCCAGATACCGATCCCAGCTCCATCCAAGGCTGAAGCTGCAGCAGCTCCGGAAACACCAGCAGGCAAGCCATTTCGATGGTGGGCGATGGTGGCAGTGGACGTCTTCTTCCTCATCGCCGGTCAGACATCGGCGACACTGCTGGGCAGATACTACTACACCCAAGGCGGCCGCAGCAAGTGGATATCGGCGTTCGTGCGGACGGCCGGCTTCCCGATACTGTTCTTCACCCTCTTCTTCTTCCCCTCGAAGTCACCGTCCTCCTGCACCAACACTCCCATGGCCAAGCTCGCCGTGATATACATCGTCCTGGGCCTCATCATCGCCGCCGACGACATGATGTACACTGGTGGCCTCAAGTACCTCCCCGCTTCGACCTACTCGCTCATCTGTGCCAGCCAGCTCGCGTTCAATGTCGTTTTCTCATACGTGCTCAACTCCCAGAAGGTCACTCCTCTGATATCCAACTCCGTCGTGCTGCTCACCATGTCCGCTTCGCTCATCGGAGTCAGCAAGGAGTCTCAGGGGGTCACCGGCGTCTCGGGAGGGAAGTATCTGCTCGGTTTCGTGCTGACGCTGGGGGCGTCGTGCACCTACTCGCTGATCCTCGCGCTGATGCAGCTCACCTTCGAGACCATCATCAAGAAGCACACCTTCTCAGCCGTCCTCAACATGCAGATCTACACGGCGCTCGTGGCGACGGCCGCGTCGGTGGTCGGGCTGTTCGCGAGCGGCGAGTGGAGGTCGCTGAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAACATCGGGGTGCTCGGCCTCATCTTCGAGGTGTCGGCGCTCTTCTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTCTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTCGTATCTGTTTCAGCACTATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCACAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTACTAGATGTTCGTTACTTATGTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTACTAGTAGTTTTCTTGTTCTTTTCTTCATGTGCGTTTGTGTAAGGGTATGACGCATAATTGTATATCACGAAAGAATAGAAATAGTAGTACTAGACTAGTAAAGAACTCT]
[+] EMBL AK119483 [AGGGTGGCAGTTCCTCGAATAAAAAAATGGCGGACAGTAACGCCGGCGGCAACAACAGTAGCGGTGCCGCGAACAACGCCGAGGTCCAGATACCGATCCCAGCTCCATCCAAGGCTGAAGCTGCAGCAGCTCCGGAAACACCAGCAGGCAAGCCATTTCGATGGTGGGCGATGGTGGCAGTGGACGTCTTCTTCCTCATCGCCGGTCAGACATCGGCGACACTGCTGGGCAGATACTACTACACCCAAGGCGGCCGCAGCAAGTGGATATCGGCGTTCGTGCGGACGGCCGGCTTCCCGATACTGTTCTTCACCCTCTTCTTCTTCCCCTCGAAGTCACCGTCCTCCTGCACCAACACTCCCATGGCCAAGCTCGCCGTGATATACATCGTCCTGGGCCTCATCATCGCCGCCGACGACATGATGTACACTGGTGGCCTCAAGTACCTCCCCGCTTCGACCTACTCGCTCATCTGTGCCAGCCAGCTCGCGTTCAATGTCGTTTTCTCATACGTGCTCAACTCCCAGAAGGTCACTCCTCTGATATCCAACTCCGTCGTGCTGCTCACCATGTCCGCTTCGCTCATCGGAGTCAGCAAGGAGTCTCAGGGGGTCACCGGCGTCTCGGGAGGGAAGTATCTGCTCGGTTTCGTGCTGACGCTGGGGGCGTCGTGCACCTACTCGCTGATCCTCGCGCTGATGCAGCTCACCTTCGAGACCATCATCAAGAAGCACACCTTCTCAGCCGTCCTCAACATGCAGATCTACACGGCGCTCGTGGCGACGGCCGCGTCGGTGGTCGGGCTGTTCGCGAGCGGCGAGTGGAGGTCGCTGAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAACATCGGGGTGCTCGGCCTCATCTTCGAGGTGTCGGCGCTCTTCTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTCTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTCGTATCTGTTTCAGCACTATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCACAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTACTAGATGTTCGTTACTTATGTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTACTAGTAGTTTTCTTGTTCTTTTCTTCATGTGCGTTTGTGTAAGGGTATGACGCATAATTGTATATCACGAAAGAATAGAAATAGTAGTACTAGACTAGTAAAGAACTCT]
consensusID : consensus_1550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[AGACAAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAAAATCGGGGTGCTCGGCCTCATTTTCGAGGTGTTGGCGCTCTTTTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTTTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTTGTATCTGTTTCAGCCCCATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCCCAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTGCTAGATGTTCGTTACTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTNCTAGTAAAAAAAAAAAAAAAAA]
[-] EMBL CA763521 [AGACAAGGGGGGAGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCGTGTCGTGGCAGGTGGCCAAAATCGGGGTGCTCGGCCTCATTTTCGAGGTGTTGGCGCTCTTTTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTTTTCGCGGTGGTGGTGTTCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTATTTTGTATCTGTTTCAGCCCCATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTGATAGTGCGCAGGGGTGATCAGATTAGGTGGCCCCAGTGATATTATCGTGGTAGAGATTGATTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTGCTAGATGTTCGTTACTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGTGTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTNCTAGTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1550#0 AGGGTGGCAGTTCCTCGAATAAAAAAATGGCGGACAGTAACGCCGGCGGCAACAACAGTA 60
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 GCGGTGCCGCGAACAACGCCGAGGTCCAGATACCGATCCCAGCTCCATCCAAGGCTGAAG 120
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 CTGCAGCAGCTCCGGAAACACCAGCAGGCAAGCCATTTCGATGGTGGGCGATGGTGGCAG 180
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 TGGACGTCTTCTTCCTCATCGCCGGTCAGACATCGGCGACACTGCTGGGCAGATACTACT 240
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 ACACCCAAGGCGGCCGCAGCAAGTGGATATCGGCGTTCGTGCGGACGGCCGGCTTCCCGA 300
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 TACTGTTCTTCACCCTCTTCTTCTTCCCCTCGAAGTCACCGTCCTCCTGCACCAACACTC 360
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 CCATGGCCAAGCTCGCCGTGATATACATCGTCCTGGGCCTCATCATCGCCGCCGACGACA 420
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 TGATGTACACTGGTGGCCTCAAGTACCTCCCCGCTTCGACCTACTCGCTCATCTGTGCCA 480
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 GCCAGCTCGCGTTCAATGTCGTTTTCTCATACGTGCTCAACTCCCAGAAGGTCACTCCTC 540
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 TGATATCCAACTCCGTCGTGCTGCTCACCATGTCCGCTTCGCTCATCGGAGTCAGCAAGG 600
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 AGTCTCAGGGGGTCACCGGCGTCTCGGGAGGGAAGTATCTGCTCGGTTTCGTGCTGACGC 660
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 TGGGGGCGTCGTGCACCTACTCGCTGATCCTCGCGCTGATGCAGCTCACCTTCGAGACCA 720
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 TCATCAAGAAGCACACCTTCTCAGCCGTCCTCAACATGCAGATCTACACGGCGCTCGTGG 780
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 CGACGGCCGCGTCGGTGGTCGGGCTGTTCGCGAGCGGCGAGTGGAGGTCGCTGAGGGGGG 840
consensus_1550#1 ------------------------------------------------AGACAAGGGGGG 12
* *******
consensus_1550#0 AGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCG 900
consensus_1550#1 AGATGAACGCGTTCAGGTCGGGGCAGTTCTCCTACCTGATGACGCTGCTGTGGGCGGCCG 72
************************************************************
consensus_1550#0 TGTCGTGGCAGGTGGCCAACATCGGGGTGCTCGGCCTCATCTTCGAGGTGTCGGCGCTCT 960
consensus_1550#1 TGTCGTGGCAGGTGGCCAAAATCGGGGTGCTCGGCCTCATTTTCGAGGTGTTGGCGCTCT 132
******************* ******************** ********** ********
consensus_1550#0 TCTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTCTTCGCGGTGGTGGTGT 1020
consensus_1550#1 TTTCCAACGTGATCAGCACGGTGTCACTGCCGGTCATCCCGTTTTTCGCGGTGGTGGTGT 192
* ***************************************** ****************
consensus_1550#0 TCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTA 1080
consensus_1550#1 TCCACGACAGGATGAACGGGGTGAAGATCGTGGCCATGCTGATTGCAATTTGGGGATTTA 252
************************************************************
consensus_1550#0 TTTCGTATCTGTTTCAGCACTATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTG 1140
consensus_1550#1 TTTTGTATCTGTTTCAGCCCCATCTAGATGGCAAGAAAGCGAAGAAGGCTTCATCGGGTG 312
*** ************** * ***************************************
consensus_1550#0 ATAGTGCGCAGGGGTGATCAGATTAGGTGGCCACAGTGATATTATCGTGGTAGAGATTGA 1200
consensus_1550#1 ATAGTGCGCAGGGGTGATCAGATTAGGTGGCCCCAGTGATATTATCGTGGTAGAGATTGA 372
******************************** ***************************
consensus_1550#0 TTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTACTAGATGTTCGTTA 1260
consensus_1550#1 TTGCTCTCCGCCAATAATCTTAGCTAGTTTTGTTGGCTGCGAGGTGCTAGATGTTCGTTA 432
********************************************* **************
consensus_1550#0 CTTATGTTATGTTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGT 1320
consensus_1550#1 CTTATG-----TTGCAGGTTGTTCGTCAGATAAAAACTAGTACGTACTTTGTTTTTTTGT 487
****** *************************************************
consensus_1550#0 GTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTACTAGTAGTTTTCTTGTTCTTTT 1380
consensus_1550#1 GTTGCCAACGTGTTCAGATGTACAATTTTGCTGGATTNCTAGTAAAAAAAAAAAAAAAAA 547
************************************* ******
consensus_1550#0 CTTCATGTGCGTTTGTGTAAGGGTATGACGCATAATTGTATATCACGAAAGAATAGAAAT 1440
consensus_1550#1 ------------------------------------------------------------
consensus_1550#0 AGTAGTACTAGACTAGTAAAGAACTCT 1467
consensus_1550#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||