|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1190 fasta sequence
[ACGAGGCCTCTTCTGGTCGCCCCCACCCACTCACAGGCTCAACTCAACTCCACCCGAATCCGCAAGAGAGAGAGAGAGAGACGATGGCGGCGGCGGCGGGAGGAGGGACGAGGGAGGAGATGGTGTACATGGCGAA-CTGGCGGA-CAGGCGGAGAGGTACGAGGAGATGGTGGAGTTCATGGAGAAGGTGGTGACGGCGGCGGCGGCGGGCGGGGGTGGGGAGCTCACGGTGGAGGAGAGGAACCTGCTGTCCGTGGCGTACAAGAACGTCATCGGCGCGCGCAGGGCGTCGTGGCGCATCGTGTCCTCCATCGAGCAGAAGGAGGAAGGCCGCGGCGCCGCGGGCCACGCCGCCGCCGCGCGCTCCTACCGCGCCCGCGTCGAGGCCGAGCTCTCCAACATCTGCGCGGGGATACTCCGCCTCCTCGACGAGCGCCTCGTCCCCGCCGCCGCCGCCGTCGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG-CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG-GGAAGAATCCTACAAGG-ACAGCACCCTG-ATCATGCAG-CTTCTT-CGC-GACAATCTCAC-TTTGTGGACTTCTG-ATATGCA-GGACGATGGAG-GTGATGAAATGA-GGGATGCAACCAAGCCTG-AGGATGAGCACTA-GCTAAAGATCCTAGT-GACAGTC-GTCTGTCT-CTTAACCGCTGG-GGGTAGTTAT-GATGCTTGTACAA-GGACCATTTTCTTG-TGTCCTTTCGTC-GGGTCTTT-GCTTACCCTTT-GTTTACTTATAT-TGCTATCGCCATCCTCATGTATTATT-TGTTACTTTCCT-GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTGTTCGATA---AAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAACACT]
[+] EMBL BP185051 [ACGAGGCCTCTTCTGGTCGCCCCCACCCACTCACAGGCTCAACTCAACTCCACCCGAATCCGCAAGAGAGAGAGAGAGAGACGATGGCGGCGGCGGCGGGAGGAGGGACGAGGGAGGAGATGGTGTACATGGCGAAGCTGGCGGAGCAGGCGGAGAGGTACGAGGAGATGGTGGAGTTCATGGAGAAGGTGG ]
[+] EMBL C74460 [ CCCANCCACTCACAGGCTCAACTCAACTCCACCCGAATCCGCAAGAGAGATAGAGANATACGATGGCGGCGGCGGCGGGAGGAGGGACGAGGGAGGAGATGGTGTACATGGCGAA CTGGCGGA CAGGCGGAGAGGTACGAGGAGATGGTGGAGTTCATGGAGAANGTGGTGACGGCGGCGGCGGCGGGCCGGGGTTGGGAGCTCACGGTTGAGGAGANGAACCTNCTGT CGTGGCGTANAAAAACG ]
[+] EMBL AU162512 [ ACTCCACCCGAATCCGCAAGAGAGAGAGAGAGAGACGATGGCGGCGGCGGCGGGAGGAGGGACGAGGGAGGAGATGGTGTACATGGCGAA NTGGCGGA NAGGCGGAGAGGTACGAGGAGATGGTGGAGTTCATGGAGAAGGTGGTGACGNCGGCGGCGGCGGGCGGNGGTGGGGAGCTCACGGTGGAGGAGAGGAACCTGCTGTCCGTNGCGTACAAGAACGTCATCGGCGCGCGCAGNGCGTCGTGGCGCATCGTGTCCTCCATCGAGCAGAAGGAGGAAGNCCGCGGCGCCGCGGGC ]
[+] EMBL C74811 [ CCGAATCCGCAAGAGAGAGAGAGAGAGACGATGGCGGCGGCGGCGGGAGGAGGGACGAGGGAGGAGATGGTGTACATGGCGAA CTGGCGGA CAGGCGGAGAGGTACGAGGAGATGGTGGAGTTCATGGAGAAGGTGGTGACNGCGGCGGCGGCGGGCGGGGGTGGGGAGCTCACGGTGGAGGAGAGGAACCTGCTGTCCGTGGCGTACAAGAACGTCATCGGCGCGCGCAGGGCGTCGTGGCGCATCGTGTCCTCCATCGAGCA ]
[+] EMBL AK101599 [ GGCGGGGGTGGGGAGCTCACGGTGGAGGAGAGGAACCTGCTGTCCGTGGCGTACAAGAACGTCATCGGCGCGCGCAGGGCGTCGTGGCGCATCGTGTCCTCCATCGAGCAGAAGGAGGAAGGCCGCGGCGCCGCGGGCCACGCCGCCGCCGCGCGCTCCTACCGCGCCCGCGTCGAGGCCGAGCTCTCCAACATCTGCGCGGGGATACTCCGCCTCCTCGACGAGCGCCTCGTCCCCGCCGCCGCCGCCGTCGACGCCAAGGTCTTCTACCTCAAGATGGAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTG ]
[+] EMBL AY224524 [ GGCGGGGGTGGGGAGCTCACGGTGGAGGAGAGGAACCTGCTGTCCGTGGCGTACAAGAACGTCATCGGCGCGCGCAGGGCGTCGTGGCGCATCGTGTCCTCCATCGAGCAGAAGGAGGAAGGCCGCGGCGCCGCGGGCCACGCCGCCGCCGCGCGCTCCTACCGCGCCCGCGTCGAGGCCGAGCTCTCCAACATCTGCGCGGGGATACTCCGCCTCCTCGACGAGCGCCTCGTCCCCGCCGCCGCCGCCGTCGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGA ]
[+] EMBL AY224434 [ GGCGGGGGTGGGGAGCTCACGGTGGAGGAGAGGAACCTGCTGTCCGTGGCGTACAAGAACGTCATCGGCGCGCGCAGGGCGTCGTGGCGCATCGTGTCCTCCATCGAGCAGAAGGAGGAAGGCCGCGGCGCCGCGGGCCACGCCGCCGCCGCGCGCTCCTACCGCGCCCGCGTCGAGGCCGAGCTCTCCAACATCTGCGCGGGGATACTCCGCCTCCTCGACGAGCGCCTCGTCCCCGCCGCCGCCGCCGTCGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGA ]
[+] EMBL CA755697 [ CCTCCATCGAGCAGAAGGAGGAAGGCCGCGGCGCCGCGGGCCACGCCGCCGCCGCGCGCTCCTACCGCGCCCGCGTCGAGGCCGAGCTCTCCAACATCTGCGCGGGGATACTCCGCCTCCTCGACGAGCGCCTCGTCCCCGCCGCCGCCGCCGTCGACGCCCAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGGAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTTCCGC GAC ATCTCAC TTTGGGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGC ACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGg g ]
[+] EMBL BP184471 [ AGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTAaaaaaaaaa ]
[+] EMBL AU032196 [ CCNACGCCACCCTCGCCGCNTACNAGGCCGCGCAGGACATAGCCATGAAGGAG TGTCGCCCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTGTTCGATATTTAAAAAAAAAAAAAAAAAAAACAAAAAAA ]
[-] EMBL CB651018 [ CGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTGGTATGATTGAATGGCTATGCTTGTTCGATA TTTAAAAAAAGAAA ]
[-] EMBL CB649534 [ CGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCG CCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTAAGGTGATTGAATGGCTATGC ]
[+] EMBL CA998244 [ CTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGGCTTT GCTTACCCCTT GTTTACTTATAT TGCT ]
[+] EMBL CB000527 [ CTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGG GGAAGAATCCTACAAGG ACAGCACCCTG ATCATGCAG CTTCTT CGC GACAATCTCAC TTTGTGGACTTCTG ATATGCA GGACGATGGAG GTGATGAAATGA GGGATGCAACCAAGCCTG AGGATGAGCACTA GCTAAAGATCCTAGT GACAGTC GTCTGTCT CTTAACCGCTGG GGGTAGTTAT GATGCTTGTACAA GGACCATTTTCTTG TGTCCTTTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTGTTCGATA AAAAAAAAA ]
[+] EMBL BU673354 [ TACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGTGGCAGAATCCTACAAGGTACCGCACCCTGTCTCATGCAGACTTCTT CGCAGACAATCTCACTTTTGTGGACTTCTGTATATGCACGGACGATGGAGTGTGATGAAATGACGGGATGCAACCAAGCCTGCAGGATGAGCACTACGCTAAAGATCCTAGTAGACAGTCAGTCTGTCTCCTTAACCGCTGGAGGGTAGTTATAGATGCTTGTACAACGGACCATTTTCTTGATGTCCTTTCGTCTGGGTCTTTGGCTTACCCTTTAGTTTACTTATATATGCTATCGCCATCCTCATGTATTATTCTGTTACTTTCCTGGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTACCTAGGACAAGGATTGTCAACTCTTGTc ]
[+] EMBL CF332260 [ TTCGTC GGGTCTTT GCTTACCCTTT GTTTACTTATAT TGCTATCGCCATCCTCATGTATTATT TGTTACTTTCCT GCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTGTTCGATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACT]
consensusID : consensus_15501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 704 fasta sequence
[GTTATCCGGCTCGATTCCGCCGTCGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGATCATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGACAGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTTGTGTCCTTTTATCGTCGGGTCTTTGCTTACCCTTTGTTTACTTATATTGCTATCGCCATCCTCATGTATTATTTGTTACTTTCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTGTTCGA]
[-] EMBL CB629013 [GTTATCCGGCTCGATTCCGCCGTCGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGATCATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGACAGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTTGTGTCCTTTTATCGTCGGGTCTTTGCTTACCCTTTGTTTACTTATATTGCTATCGCCATCCTCATGTATTATTTGTTACTTTCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGCTTGTTCGA]
[-] EMBL CB649533 [ GCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGATCATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCATTAGNTAAAGATCTTAGTGAC ]
consensusID : consensus_15501#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence
[CTCAACTCCACCCGAATCCGCAAGAGAGAGAGAGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACNCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTTACGAGATCCTCAACTCGCCCGACGGCGCGTGGACGGTTCGCCAAGCAGGCCTTCGATGAAGCTAATTCGGGATTGGGTANCCTTGGGGAAGAATCCTACAAGGACAGCACCTTTATCATCCCCCCTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCACCCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGACAGTCGTCTGTCTTTTAACCGCTGGGGGTAGTTATGACGCCGTCACCACCTTCTCCATGAACTCCACCATCTCCTCGTACCTCTCCGCCTGCTCCGCCAGCTTCGCCATGTACACCATCTCCTCCCTCGTCCCTCCTCCCGCCGCCGCCGCCATCGTCTCTCTCTCTCTCTCTTGCGGATTCGGGTGGAGTTGAGTTGAGCCTGTGAGTGGGTGAGGGCGACCA]
[+] EMBL AU065609 [CTCAACTCCACCCGAATCCGCAAGAGAGAGAGAGACGCCAAGGTCTTCTACCTCAAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAGGACGCCGCCGACGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACNCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTTACGAGATCCTCAACTCGCCCGACGGCGCGTGGACGGTTCGCCAAGCAGGCCTTCGATGAAGCTAATTCGGGATTGGGTAN ]
[-] EMBL CB651017 [ CTACCAGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTAC TACGAGATCCTCAACTCGCCCGACCGCGCGTGCAC GCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCTTTATCATCCCCCCTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCACCCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGACAGTCGTCTGTCTTTTAACCGCTGGGGGTAGTTATGACGCCGTCACCACCTTCTCCATGAACTCCACCATCTCCTCGTACCTCTCCGCCTGCTCCGCCAGCTTCGCCATGTACACCATCTCCTCCCTCGTCCCTCCTCCCGCCGCCGCCGCCATCGTCTCTCTCTCTCTCTCTTGCGGATTCGGGTGGAGTTGAGTTGAGCCTGTGAGTGGGTGAGGGCGACCA]
[-] EMBL BP184470 [ ACCATCTCCTCGTACCTCTCCGCCTGCTCCGCCAGCTTCGCCATGTACACCATCTCCTCCCTCGTCCCTCCTCCCGCCGCCGCCGCCATCGTCTCTCTCTCTCTCTCTTGCGGATTCGGGTGGAGTTGAGTTGAGCCTG ]
consensusID : consensus_15501#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[GAGCCNAGCGCAAGGACNCCGCCGAANGCCACCCTCGCCGCCTACCAGGCCGCGCAGGANATNGCCATGAAAGGGANCTGTCGCCCNACGCACCCCATTCANACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGNCCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGATCATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTNGTGACAGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTTGTGTCCTTTCGTCGGGTCTTTGCTTACCCTTTGTTTACTTATATTGCTATCGCCATCCTCATGTATTATTTGTTACTTTCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTNCTNTGAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030047 [GAGCCNAGCGCAAGGACNCCGCCGAANGCCACCCTCGCCGCCTACCAGGCCGCGCAGGANATNGCCATGAAAGGGANCTGTCGCCCNACGCACCCCATTCANACTGGGCCTTGCGCTCAACTTCTCCGTGTTCTACTACGAGATCCTCAACTCGCCCGNCCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGATCATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTNGTGACAGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTTGTGTCCTTTCGTCGGGTCTTTGCTTACCCTTTGTTTACTTATATTGCTATCGCCATCCTCATGTATTATTTGTTACTTTCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTNCTNTGAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15501#0 ACGAGGCCTCTTCTGGTCGCCCCCACCCACTCACAGGCTCAACTCAACTCCACCCGAATC 60
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 CGCAAGAGAGAGAGAGAGAGACGATGGCGGCGGCGGCGGGAGGAGGGACGAGGGAGGAGA 120
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 TGGTGTACATGGCGAACTGGCGGACAGGCGGAGAGGTACGAGGAGATGGTGGAGTTCATG 180
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 GAGAAGGTGGTGACGGCGGCGGCGGCGGGCGGGGGTGGGGAGCTCACGGTGGAGGAGAGG 240
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 AACCTGCTGTCCGTGGCGTACAAGAACGTCATCGGCGCGCGCAGGGCGTCGTGGCGCATC 300
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 GTGTCCTCCATCGAGCAGAAGGAGGAAGGCCGCGGCGCCGCGGGCCACGCCGCCGCCGCG 360
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 CGCTCCTACCGCGCCCGCGTCGAGGCCGAGCTCTCCAACATCTGCGCGGGGATACTCCGC 420
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ------------------------------------------------------------
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 CTCCTCGACGAGCGCCTCGTCCCCGCCGCCGCCGCCGTCGACGCCAAGGTCTTCTACCTC 480
consensus_15501#3 ------------------------------------------------------------
consensus_15501#1 ---------------GTTATCCGGCTCGATTCCGCCGTCGACGCCAAGGTCTTCTACCTC 45
consensus_15501#2 ------CTCAACTCCACCCGAATCCGCAAGAGAGAGAGAGACGCCAAGGTCTTCTACCTC 54
consensus_15501#0 AAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAG 540
consensus_15501#3 ----------------------------------------------GAGCCNAGCGCAAG 14
consensus_15501#1 AAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAG 105
consensus_15501#2 AAGATGAAGGGCGACTACCACCGCTACCTCGCCGAGTTCAAGACCGGAGCCGAGCGCAAG 114
***** ********
consensus_15501#0 GACGCCGCCGA-CGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAA--G 597
consensus_15501#3 GACNCCGCCGAANGCCACCCTCGCCGCCTACCAGGCCGCGCAGGANATNGCCATGAAAGG 74
consensus_15501#1 GACGCCGCCGA-CGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAA--G 162
consensus_15501#2 GACGCCGCCGA-CGCCACCCTCGCCGCCTACCAGGCCGCGCAGGACATAGCCATGAA--G 171
*** ******* ******************************** ** ******** *
consensus_15501#0 GAGCTGTCGCC-GACGCACCCCAT-CAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCT 655
consensus_15501#3 GANCTGTCGCCCNACGCACCCCATTCANACTGGGCCTTGCGCTCAACTTCTCCGTGTTCT 134
consensus_15501#1 GAGCTGTCGCC-GACGCACCCCAT-CAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCT 220
consensus_15501#2 GAGCTGTCGCC-GACGCACNCCAT-CAGACTGGGCCTTGCGCTCAACTTCTCCGTGTTCT 229
** ******** ****** **** ** ********************************
consensus_15501#0 ACT-ACGAGATCCTCAACTCGCCCGACCGCGCGTGCACG-CTCGCCAAGCAGGCCTTCGA 713
consensus_15501#3 ACT-ACGAGATCCTCAACTCGCCCGNCCGCGCGTGCACG-CTCGCCAAGCAGGCCTTCGA 192
consensus_15501#1 ACT-ACGAGATCCTCAACTCGCCCGACCGCGCGTGCACG-CTCGCCAAGCAGGCCTTCGA 278
consensus_15501#2 ACTTACGAGATCCTCAACTCGCCCGACGGCGCGTGGACGGTTCGCCAAGCAGGCCTTCGA 289
*** ********************* * ******* *** *******************
consensus_15501#0 TGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGAT 773
consensus_15501#3 TGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGAT 252
consensus_15501#1 TGAAGCTATTTCGGAACTGGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGAT 338
consensus_15501#2 TGAAGCTAATTCGGGATTGGGTANCCTTGGGGAAGAATCCTACAAGGACAGCACCTTTAT 349
******** ***** * *** ** ******************************* * **
consensus_15501#0 CATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGG 833
consensus_15501#3 CATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGG 312
consensus_15501#1 CATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGG 398
consensus_15501#2 CATCCCCCCTCTTCGCGACAATCTCACTTTGTGGACTTCTGATATGCAGGACGATGGAGG 409
*** * * ***************************************************
consensus_15501#0 TGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGAC 893
consensus_15501#3 TGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTNGTGAC 372
consensus_15501#1 TGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGAC 458
consensus_15501#2 TGATGAAATGAGGGATGCACCCAAGCCTGAGGATGAGCACTAGCTAAAGATCCTAGTGAC 469
******************* ********************************** *****
consensus_15501#0 AGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTT 953
consensus_15501#3 AGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTT 432
consensus_15501#1 AGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTT 518
consensus_15501#2 AGTCGTCTGTCTTTTAACCGCTGGGGGTAGTTATGACGCCGTCACCA---CCTTCTCCAT 526
************ *********************** ** ** * ** * * * *
consensus_15501#0 GTGTCCTTT---CGTCGGGTCTTTGCTTACCCTTTGTTT-ACTTATATTGCTATCGCCAT 1009
consensus_15501#3 GTGTCCTTT---CGTCGGGTCTTTGCTTACCCTTTGTTT-ACTTATATTGCTATCGCCAT 488
consensus_15501#1 GTGTCCTTTTATCGTCGGGTCTTTGCTTACCCTTTGTTT-ACTTATATTGCTATCGCCAT 577
consensus_15501#2 GAACTCCAC---CATCTCCTCGTACCTCTCCGCCTGCTCCGCCAGCTTCGCCATGTACAC 583
* * * ** ** * ** ** ** * * * ** ** **
consensus_15501#0 CCTCATGTATTATTTGTTACTT-TCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCT 1068
consensus_15501#3 CCTCATGTATTATTTGTTACTT-TCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCT 547
consensus_15501#1 CCTCATGTATTATTTGTTACTT-TCCTGCTGGAATCCTGCTCGTGTGTGGGAGAGTGCCT 636
consensus_15501#2 CATCTCC--TCCCTCGTCCCTCCTCCCGCCGCCGCCGCCATCGTCTCTCTCTCTCTCTCT 641
* ** * * ** ** *** ** * * **** * * * **
consensus_15501#0 CAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGC 1128
consensus_15501#3 CAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTNCTNTGA-------------- 593
consensus_15501#1 CAAGCCTTTAACTAGGACAAGGATTGTCAACTCTTGTTTACTATGATTGAATGGCTATGC 696
consensus_15501#2 TGCGGATTCGGGTGGAGTTGAGTTGAGC--CTGTGAGTGGGTGAGGGCGACCA------- 692
* ** * * * * * ** * * * *
consensus_15501#0 TTGTTCGATAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAACA 1188
consensus_15501#3 ---------AAAAAAAAAAAAAAAAAAAA------------------------------- 613
consensus_15501#1 TTGTTCGA---------------------------------------------------- 704
consensus_15501#2 ------------------------------------------------------------
consensus_15501#0 CT 1190
consensus_15501#3 --
consensus_15501#1 --
consensus_15501#2 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||