|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1746 fasta sequence
[GCCCAGCAAACGCACCAAACCGCCCGTGGTGTTTTACGTCGTAGCGCCGCGGGCAGCAGCAGCGGCGTGCCTGTGCCATGTCGAGCGAGGTGACGTCGGTTCCGCCGACGCCGACGCCGCCGCCGGTGTCGACCCCGCCGTCGCAGATACAGTCACCGGCGGCGCCGGCGAGCAGCCGGGCGTCGCCGCTGCGGGGGATGGGGACGCCGAACATCGCCAGCCCCGTGAGGAAGGCGGTGGCGAGCGTGAGTGGCTACCTGGGTGAGGTCGGCCAAATGACGCGGCTCGCCGACCCGCGCGACGCCTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCTACTACGCCGCGTTCCACAGCCTCAGCTCCGGCATCGGCTTCCAGGCGCTCGTGCTCCCCGTCGCCTTCTCCCTTCTCGGATGGACATGGGCGATCATCTGCCTGACCGTGGCGTTCGCGTGGCAGCTCTACACGCTGTGGCTGCTCGTCAAGCTCCACGAGCCCGTCGCTGGTGGCACCCGGTACAGCCGATACATGTACCTCGCCACCACCGTCTTCGGCGAGAAATGGGGGAAGATACTGGCGTTGCTCCCGGTCATGTACCTGTCGGCGGGCACCTGCACGGCGCTCGTCATCGTCGGCGGCGGCAGCATGAAGCTGCTGTTCAACATCGCGTGCGGGGAGGTGTGCCTGGCCCGGCCGCTGACGACCGTGGAGTGGTACCTCGTGTTCGTCTGCGTCGCCGCGCTGCTGTCCCAGCTCCCGAACCTCAACTCCATCGCCGGCGTGTCGCTCGTCGGCGCCACCGCGGCCGTCGCGTACTGCACCATGATCTGGGTCGTGTCCGTGGCCAAGGGGAGGGTGGCCGGCGTGTCCTACGACCCGGTCAGGACCACCGACGAGGAGGACGGCGCGATTGGTATCCTGAATGGCCTCGGCATCATTGCGTTCGCGTTTAGGGGGCACAATCTTGTGCTCGAGATTCAGGCCACAATGCCATCAACTCTGAAACATCCTTCTCACGTGCCGATGTGGAAGGGCGTCAAAGCTGCCTACGTCATCATCGCACTCTGCTTGTACCCTGTGGCCGTTGGTGGCTTCTGGGCTTACGGCGATCAGATACCACCAAATGGGATCCTGAGCGCGCTGTACAAGTTCCACAGCCAGGACGTGTCCAGGGTGGTGCTGGGGACTGCGACGCTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTGTTCGACAACATGGAGACCGGGTACGTCCACAAGAAGAACCGGCCGTGCCCGTGGTGGATGCGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCGCCGTCGCGCTGCCGTTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTACCCGTGCTTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACCAACTGGGGGCTGGGAAGCCTTGGCATGGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTCTGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTGCGGATTTCCAGTGAGAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGATTTTGTCTTTTCTCAGCACAACTGTAATAGGTTGATTTTGTTTAGAAGCTATGCTCTAATAACACTTCAA]
[+] EMBL AK060598 [GCCCAGCAAACGCACCAAACCGCCCGTGGTGTTTTACGTCGTAGCGCCGCGGGCAGCAGCAGCGGCGTGCCTGTGCCATGTCGAGCGAGGTGACGTCGGTTCCGCCGACGCCGACGCCGCCGCCGGTGTCGACCCCGCCGTCGCAGATACAGTCACCGGCGGCGCCGGCGAGCAGCCGGGCGTCGCCGCTGCGGGGGATGGGGACGCCGAACATCGCCAGCCCCGTGAGGAAGGCGGTGGCGAGCGTGAGTGGCTACCTGGGTGAGGTCGGCCAAATGACGCGGCTCGCCGACCCGCGCGACGCCTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCTACTACGCCGCGTTCCACAGCCTCAGCTCCGGCATCGGCTTCCAGGCGCTCGTGCTCCCCGTCGCCTTCTCCCTTCTCGGATGGACATGGGCGATCATCTGCCTGACCGTGGCGTTCGCGTGGCAGCTCTACACGCTGTGGCTGCTCGTCAAGCTCCACGAGCCCGTCGCTGGTGGCACCCGGTACAGCCGATACATGTACCTCGCCACCACCGTCTTCGGCGAGAAATGGGGGAAGATACTGGCGTTGCTCCCGGTCATGTACCTGTCGGCGGGCACCTGCACGGCGCTCGTCATCGTCGGCGGCGGCAGCATGAAGCTGCTGTTCAACATCGCGTGCGGGGAGGTGTGCCTGGCCCGGCCGCTGACGACCGTGGAGTGGTACCTCGTGTTCGTCTGCGTCGCCGCGCTGCTGTCCCAGCTCCCGAACCTCAACTCCATCGCCGGCGTGTCGCTCGTCGGCGCCACCGCGGCCGTCGCGTACTGCACCATGATCTGGGTCGTGTCCGTGGCCAAGGGGAGGGTGGCCGGCGTGTCCTACGACCCGGTCAGGACCACCGACGAGGAGGACGGCGCGATTGGTATCCTGAATGGCCTCGGCATCATTGCGTTCGCGTTTAGGGGGCACAATCTTGTGCTCGAGATTCAGGCCACAATGCCATCAACTCTGAAACATCCTTCTCACGTGCCGATGTGGAAGGGCGTCAAAGCTGCCTACGTCATCATCGCACTCTGCTTGTACCCTGTGGCCGTTGGTGGCTTCTGGGCTTACGGCGATCAGATACCACCAAATGGGATCCTGAGCGCGCTGTACAAGTTCCACAGCCAGGACGTGTCCAGGGTGGTGCTGGGGACTGCGACGCTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTGTTCGACAACATGGAGACCGGGTACGTCCACAAGAAGAACCGGCCGTGCCCGTGGTGGATGCGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCGCCGTCGCGCTGCCGTTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTACCCGTGCTTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACCAACTGGGGGCTGGGAAGCCTTGGCATGGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTCTGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTGCGGATTTCCAGTGAGAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGATTTTGTCTTTTCTCAGCACAACTGTAATAGGTTGATTTTGTTTAGAAGCTATGCTCTAATAACACTTCAA]
consensusID : consensus_1551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[ATCCGCCCAGCAAACCCACCAAACCGCCCGTGGTGTTTTNCNTCCTACCGCCACGGGCAGCAGCANCGGCGTGCCTGTGCCATGTCGAGCGANGTGACGTCNGTTCCGCCGACGCCGACNCCGCCGCCGGTGTCTACCCCGCCGTCNCANATACANTCACCGGCGGCGCCGGCGAACAACCGGGCGTCCCCGCTGCGGGGGATGGGGACCCCNAACATCGCCANCCCCCTGAGGAAAGNGGTGGCNANCGTNAATGGCTACCTGGGTNANGTCGCCAAATGACACGGCTCGCCGACCGCGCGACCCTGGCTTTTNTTCACCNAATCCCGCAGCGGCAACCCTACTACNCCNCNTTCCNCAGCCTCAGCTCCNGCATCCGCTTCCAAGCGCTCGTGCTCCCCGTCCCTTCTCCCTTCTCGGATGGACTNGGCGATATCTGCCTGACCGTGGNGTTCGCATNGCACTCTACCNCTGTGGCTGCCCCTCAACTCNCNAACCCNTCCCTTGTGGCNCCCGTNCACCCANNCATNTTNCTCNCCNCCN]
[+] EMBL AA753066 [ATCCGCCCAGCAAACCCACCAAACCGCCCGTGGTGTTTTNCNTCCTACCGCCACGGGCAGCAGCANCGGCGTGCCTGTGCCATGTCGAGCGANGTGACGTCNGTTCCGCCGACGCCGACNCCGCCGCCGGTGTCTACCCCGCCGTCNCANATACANTCACCGGCGGCGCCGGCGAACAACCGGGCGTCCCCGCTGCGGGGGATGGGGACCCCNAACATCGCCANCCCCCTGAGGAAAGNGGTGGCNANCGTNAATGGCTACCTGGGTNANGTCGCCAAATGACACGGCTCGCCGACCGCGCGACCCTGGCTTTTNTTCACCNAATCCCGCAGCGGCAACCCTACTACNCCNCNTTCCNCAGCCTCAGCTCCNGCATCCGCTTCCAAGCGCTCGTGCTCCCCGTCCCTTCTCCCTTCTCGGATGGACTNGGCGATATCTGCCTGACCGTGGNGTTCGCATNGCACTCTACCNCTGTGGCTGCCCCTCAACTCNCNAACCCNTCCCTTGTGGCNCCCGTNCACCCANNCATNTTNCTCNCCNCCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1551#0 ----GCCCAGCAAACGCACCAAACCGCCCGTGGTGTTTTACGTCGTAGCGCCGCGGGCAG 56
consensus_1551#1 ATCCGCCCAGCAAACCCACCAAACCGCCCGTGGTGTTTTNCNTCCTACCGCCACGGGCAG 60
*********** *********************** * ** ** **** *******
consensus_1551#0 CAGCAGCGGCGTGCCTGTGCCATGTCGAGCGAGGTGACGTCGGTTCCGCCGACGCCGACG 116
consensus_1551#1 CAGCANCGGCGTGCCTGTGCCATGTCGAGCGANGTGACGTCNGTTCCGCCGACGCCGACN 120
***** ************************** ******** *****************
consensus_1551#0 CCGCCGCCGGTGTCGACCCCGCCGTCGCAGATACAGTCACCGGCGGCGCCGGCGAGCAGC 176
consensus_1551#1 CCGCCGCCGGTGTCTACCCCGCCGTCNCANATACANTCACCGGCGGCGCCGGCGAACAAC 180
************** *********** ** ***** ******************* ** *
consensus_1551#0 CGGGCGTCGCCGCTGCGGGGGATGGGGACGCCGAACATCGCCAGCCCCGTGAGGAAGGCG 236
consensus_1551#1 CGGGCGTCCCCGCTGCGGGGGATGGGGACCCCNAACATCGCCANCCCCCTGAGGAAAGNG 240
******** ******************** ** ********** **** ******* * *
consensus_1551#0 GTGGCGAGCGTGAGTGGCTACCTGGGTGAGGTCGGCCAAATGACGCGGCTCGCCGACCCG 296
consensus_1551#1 GTGGCNANCGTNAATGGCTACCTGGGTNANGTCG-CCAAATGACACGGCTCGCCGACC-G 298
***** * *** * ************* * **** ********* ************* *
consensus_1551#0 CGCGACGCCTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCTACTACGCCGCGTTC 356
consensus_1551#1 CGCGAC-CCTGGCTTTTNTTCACCNAATCCCGCAGCGGCAAC-CCTACTACNCCNCNTTC 356
****** ******* ***** * *************** ******** ** * ***
consensus_1551#0 CACAGCCTCAGCTCCGGCATCGGCTTCCAGGCGCTCGTGCTCCCCGTCGCCTTCTCCCTT 416
consensus_1551#1 CNCAGCCTCAGCTCCNGCATCCGCTTCCAAGCGCTCGTGCTCCCCGTC-CCTTCTCCCTT 415
* ************* ***** ******* ****************** ***********
consensus_1551#0 CTCGGATGGACATGGGCGATCATCTGCCTGACCGTGGCGTTCGCGTGGCAGCTCTACACG 476
consensus_1551#1 CTCGGATGGAC-TNGGCGAT-ATCTGCCTGACCGTGGNGTTCGCATNGCA-CTCTAC-CN 471
*********** * ****** **************** ****** * *** ****** *
consensus_1551#0 CTGTGGCTGCTCGTCAAGCTCCACGAGCCCGTCGCTGGTGGCACCCGGTACAGCCGATAC 536
consensus_1551#1 CTGTGGCTGCCCCTCAA--CTCNCNAACCCNTCCCTTGTGGCNCCCG-TNCACCC-ANNC 527
********** * **** * * * *** ** ** ***** **** * ** ** * *
consensus_1551#0 ATGTACCTCGCCACCACCGTCTTCGGCGAGAAATGGGGGAAGATACTGGCGTTGCTCCCG 596
consensus_1551#1 ATNTTNCTCNCCNCCN-------------------------------------------- 543
** * *** ** **
consensus_1551#0 GTCATGTACCTGTCGGCGGGCACCTGCACGGCGCTCGTCATCGTCGGCGGCGGCAGCATG 656
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 AAGCTGCTGTTCAACATCGCGTGCGGGGAGGTGTGCCTGGCCCGGCCGCTGACGACCGTG 716
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 GAGTGGTACCTCGTGTTCGTCTGCGTCGCCGCGCTGCTGTCCCAGCTCCCGAACCTCAAC 776
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TCCATCGCCGGCGTGTCGCTCGTCGGCGCCACCGCGGCCGTCGCGTACTGCACCATGATC 836
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TGGGTCGTGTCCGTGGCCAAGGGGAGGGTGGCCGGCGTGTCCTACGACCCGGTCAGGACC 896
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 ACCGACGAGGAGGACGGCGCGATTGGTATCCTGAATGGCCTCGGCATCATTGCGTTCGCG 956
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TTTAGGGGGCACAATCTTGTGCTCGAGATTCAGGCCACAATGCCATCAACTCTGAAACAT 1016
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 CCTTCTCACGTGCCGATGTGGAAGGGCGTCAAAGCTGCCTACGTCATCATCGCACTCTGC 1076
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TTGTACCCTGTGGCCGTTGGTGGCTTCTGGGCTTACGGCGATCAGATACCACCAAATGGG 1136
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 ATCCTGAGCGCGCTGTACAAGTTCCACAGCCAGGACGTGTCCAGGGTGGTGCTGGGGACT 1196
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 GCGACGCTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTG 1256
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TTCGACAACATGGAGACCGGGTACGTCCACAAGAAGAACCGGCCGTGCCCGTGGTGGATG 1316
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 CGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCGCCGTCGCGCTGCCG 1376
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTAC 1436
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 CCGTGCTTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACC 1496
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 AACTGGGGGCTGGGAAGCCTTGGCATGGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTC 1556
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTGCGGATTTCCAGTGA 1616
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 GAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGA 1676
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 TTTTGTCTTTTCTCAGCACAACTGTAATAGGTTGATTTTGTTTAGAAGCTATGCTCTAAT 1736
consensus_1551#1 ------------------------------------------------------------
consensus_1551#0 AACACTTCAA 1746
consensus_1551#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||