These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1487 fasta sequence [CGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAAGATCATCATCATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTCTGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCCTTTGCTCCTGCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTGCAGATGAAGAGGAATACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTTCCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAACTGGTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTACATCAAATCTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAGAACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGAGGGGACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCGTGCACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAACTGAACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCTCATCTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGAGCAACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGTGTGTATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATAC] [+] EMBL AK119493 [CGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAAGATCATCATCATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTCTGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCCTTTGCTCCTGCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTGCAGATGAAGAGGAATACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTTCCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAACTGGTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTACATCAAATCTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAGAACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGAGGGGACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCGTGCACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAACTGAACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCTCATCTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGAGCAACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGTGTGTATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATAC] consensusID : consensus_1552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CGGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATATCTGACTCGATTTTCTTAATTTCTCTCTTGATCAGAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCCTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGGGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAAAAGCTGGCCGCCGGCGATGAGCCGCCCCATATATTTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCANCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTACACATGCAGATNAAGAGGAATACGAATGCAGCATCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTG] [+] EMBL CA760062 [CGGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATATCTGACTCGATTTTCTTAATTTCTCTCTTGATCAGAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCCTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGGGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAAAAGCTGGCCGCCGGCGATGAGCCGCCCCATATATTTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCANCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTACACATGCAGATNAAGAGGAATACGAATGCAGCATCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1552#0 CGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAAGATCATCAT 60 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 CATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTC 120 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 TGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCCTTTGCTCCT 180 consensus_1552#1 ----------------------------CGGCCGCTTTTTTTTTTTTTTTTTTTTTTTTT 32 * * * * ** * *** * * consensus_1552#0 GCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTAAGCAGCAGT 240 consensus_1552#1 TTAATTAATATCT---GACTCGATTTTC--TTAATTTCTCTCTTGATCAGAAGCAGCAGT 87 ** * ** ** * * * * * * ** ********** consensus_1552#0 ACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCA 300 consensus_1552#1 ACTGATCAGTTAAGCTCATATGAGCCTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCA 147 ************************* ********************************** consensus_1552#0 GCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTA 360 consensus_1552#1 GCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTA 207 ************************************************************ consensus_1552#0 ATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGT 420 consensus_1552#1 ATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGT 267 ************************************************************ consensus_1552#0 ATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAGCTACGGCCA 480 consensus_1552#1 ATTGCAAGCTCCACGAATAATAATAGTAATGGGATGATGAACGAGGAGGAGCTACGGCCA 327 ******************************* **************************** consensus_1552#0 CGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCT 540 consensus_1552#1 CGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCT 387 ************************************************************ consensus_1552#0 CCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAG 600 consensus_1552#1 CCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAA 447 *********************************************************** consensus_1552#0 AAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCTGCT 660 consensus_1552#1 AAGCTGGCCGCCGGCGATGAGCCGCCCCATATATTTTGCAAGAGGCAGGCTGCTGCTGCT 507 ************************* ** **** ************************* consensus_1552#0 GCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCT 720 consensus_1552#1 GCAGTGGTCGGCCATAGCANCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCT 567 ******************* **************************************** consensus_1552#0 CCTGCTCATCTAATTCAAGGACCATCCAACACCCT------GCAGATGAAGAGGAATACG 774 consensus_1552#1 CCTGCTCATCTAATTCAAGGACCATCCAACACCCTACACATGCAGATNAAGAGGAATACG 627 *********************************** ****** ************ consensus_1552#0 AATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCA 834 consensus_1552#1 AATGCAGCATCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCA 687 ********* ************************************************** consensus_1552#0 ACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTT 894 consensus_1552#1 ACAGCGCTG--------------------------------------------------- 696 ********* consensus_1552#0 CCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAACTG 954 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 GTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTACATC 1014 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 AAATCTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAGAAC 1074 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 AGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGAGGG 1134 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 GACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCGTGC 1194 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 ACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAACTGA 1254 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 ACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCTCAT 1314 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 CTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGAGCA 1374 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 ACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGTGTG 1434 consensus_1552#1 ------------------------------------------------------------ consensus_1552#0 TATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATAC 1487 consensus_1552#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||