These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1625 fasta sequence [ACTATGGCATTCTCTCGATTTTCTATATGCTTTTGTGTCCTTCTCCTTTGCCATGGTTCTATGGCTCAGATATTTAGTCTAGGCATAAATCCATGGCAAAATCCTCGACAAGGGGGTTCTAGGGAGTGTAGGTTTGATAGGCTCCAAGCGTTTGAGCCGCTTAGGAAAGTGAGGCATGAAGCTGGGGTTACAGAGTACTTTGATGAGAAGAATGAGCAGTTCCAGTGCACCGGTACATTAGTAATTCGTCGCATTATTGAGCCTCAGGGCCTTCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGAAAAAAATTAAGAGATGAAAACCAAAAGATCCACCAATTTAGGCAAGGAGATGTTGTTGCACTTCCTTCTGGTATACCACACTGGTTCTATAATGAGGGTGACACCCCTGTTGTTGCTTTGTTTGTTTTTGATGTAAACAACAATGCTAATCAACTCGAACCAAGACAAAAGGAGTTCTTGTTAGCTGGTAACAATATAGAGCAACAAGTGTCCAACCCCTCAATCAACAAACATTCTGGGCAAAACATATTCAATGGATTCAACACTAAGCTATTAAGTGAGGCCTTAGGCGTTAACATAGAGGTGACCAGAAGGCTACAAAGTCAAAATGACCGAAGAGGAGATATCATTCGAGTAAAGAATGGCCTTCGATTGATAAAACCAACTATCACACAACAACAGGAACAAACACAAGATCAATACCCACCAATTCAATATCATAGAGAGCAACGATCAACAAGCAAATACAATGGCTTGGATGAGAACTTCTGTGCAATTAGGGCAAGGTTAAACATAGAAAACCCTAATCATGCTGATACTTACAACCCTCGTGCTGGAAGGATTACAA-ATCTCAATAGCCAGAAGTTCTCCATTCTTAACCTTGTCCA-AAT-GAGTGCTAC-AAGAGTAAATCTATACCA-GAATGCTATTCTCTC-ACCA-TTCT-GGAA-TA-TTAATGCT-CACAGTTT---GGT-GTATA-C--A-ATT-CAA--GGGCGT-GCTC-GAGTTCAGG-TTG-TTA-GCA-ACCATGGAAAGGCTGTA-TTTAATGGTGTTCTTCGTCCA-GGGCAATTACTAA-TCATACCA-C--AAA--TTATGTGGTTATGAAGAAAGCAGAGCT-TGAAGGATT-TCAATATGTCGCGTTTAAGA-CAAA-CCC-AATGCCA-TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC-AACAA-CAAAAAATCCA-CCAAGGGTACTCAAATG-C-AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT--AAG-TTAAAT-AAAAAA-A-ATTGCCTTCATTTAAAAAAAAAATGCACTTACTCCCTTTAAA] [+] EMBL AY196923 [ACTATGGCATTCTCTCGATTTTCTATATGCTTTTGTGTCCTTCTCCTTTGCCATGGTTCTATGGCTCAGATATTTAGTCTAGGCATAAATCCATGGCAAAATCCTCGACAAGGGGGTTCTAGGGAGTGTAGGTTTGATAGGCTCCAAGCGTTTGAGCCGCTTAGGAAAGTGAGGCATGAAGCTGGGGTTACAGAGTACTTTGATGAGAAGAATGAGCAGTTCCAGTGCACCGGTACATTAGTAATTCGTCGCATTATTGAGCCTCAGGGCCTTCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGAAAAAAATTAAGAGATGAAAACCAAAAGATCCACCAATTTAGGCAAGGAGATGTTGTTGCACTTCCTTCTGGTATACCACACTGGTTCTATAATGAGGGTGACACCCCTGTTGTTGCTTTGTTTGTTTTTGATGTAAACAACAATGCTAATCAACTCGAACCAAGACAAAAGGAGTTCTTGTTAGCTGGTAACAATATAGAGCAACAAGTGTCCAACCCCTCAATCAACAAACATTCTGGGCAAAACATATTCAATGGATTCAACACTAAGCTATTAAGTGAGGCCTTAGGCGTTAACATAGAGGTGACCAGAAGGCTACAAAGTCAAAATGACCGAAGAGGAGATATCATTCGAGTAAAGAATGGCCTTCGATTGATAAAACCAACTATCACACAACAACAGGAACAAACACAAGATCAATACCCACCAATTCAATATCATAGAGAGCAACGATCAACAAGCAAATACAATGGCTTGGATGAGAACTTCTGTGCAATTAGGGCAAGGTTAAACATAGAAAACCCTAATCATGCTGATACTTACAACCCTCGTGCTGGAAGGATTACAA ATCTCAATAGCCAGAAGTTCTCCATTCTTAACCTTGTCCA AAT GAGTGCTAC AAGAGTAAATCTATACCA GAATGCTATTCTCTC ACCA TTCT GGAA TA TTAATGCT CACAGTTT GGT GTATA C A ATT CAA GGGCGT GCTC GAGTTCAGG TTG TTA GCA ACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCA GGGCAATTACTAA TTATACCA CA AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATTTATCGCGTTTAAGA CAAA CCCAAATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA CAAAAAATCCA CCAAGAGTACTCAAATC CAAACGAAAGTGAGACTCAAGAGGTG ] [-] EMBL CA760018 [ cTCATG TGATACTTCCANCTCTGGT CT GAAAGATT CAATATTTCAATAG CAGAGTTTTTCCCTTC TAACCTTGT CA AAC GAGTG TCC AAGAGTAAATCT TACCA GAATGCTA TCTCTC ACCA TTCN GGAT TA TAATGCT CACAGTTT GGT G ATA C A A T CAAG GGGCGT GCTC GAG TCAGG GTG CTA GCA NCCATGGAAAGGCTGTA TTTAATGGTGTTNTTCGTCCA GGGCAATTACTAA TCATACCA C AAAANTTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA CAAA CCCAAATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA C AAAAATCCA CCAAGGGTACTCAAATG CAAACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAATAAAAAAA A ATTGCCTTCATTTAAAAAAAAAA ] [+] EMBL BI802085 [ AACCCTGTCCACAATGGAGTGCTACAAAGAGTAAATCTATACCACGAATGCTATTCTCTC ACCA TTCT GGAA TA TTAATGCT CACA TTT GGT GTATA C ACATT CAA GGGCGT GCTC GAGTTCAGGTTTGTTTACGCACACCATGGAAA GCTGTA TTTAATGGTGTTCTTCGTCCA GGCAATTACTAA TCATACCA C AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TC ATATGTCGCGTTTAAGA C AA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA CAAAAAATCCA CCAAGGGTACTCAAATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAAAA ] [+] EMBL BI795964 [ CTATACCA GAAT CTATTCTCTC ACCA TTCT GGAA TA TTAATGCT CACAGTTT GGT ATATA C A ATT CAA GGGCGT GCTC GAGTTCAGG TTG TTA GCA ACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCA GGGCAATTACTAA TCATACCA C AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATTGTCAATATGTCGCGTTTAAGA CAAA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAA GCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTC ] [+] EMBL BI801894 [ gGCTATTCTCTCAACCA TTCT GGAA TA TTAATGCT CACAGTTT GGTCGTATACC A TTT CAA GGCGT GCTC GAGTTCAGG TTG TTA CATACCATGGAAA GCTGTA TTTAAT GTGTTCTTCGTCCA GGGCAATTACTAA TCATACCA C AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGACCAAC CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCCATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC CACCA C AAAAATCCA CCAAGGGTACTCCAATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AACCA C ATTCCCTTCATTTAAAAAAAAAA ] [+] EMBL BI803484 [ TTCTCTC ACCAGTTCT GGAATTA TTAATGCT CACAGTTT GGT GTATA C A ATT CAA GGGCGT GCTC GAGTTCA G TTG TTA CA ACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCA GGCCATTACTAA TCATACCACC AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TC ATATGTCGCGTTTAAGA C AA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA CCAAAAATCCACCCAAGGGTACTCAAATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTCCCTTCATTTAAAAAAAAAA ] [+] EMBL BI802187 [ TCTCTC ACCA TTCT GGAA TATTTAATGCT CACAGTTT GGT GTATA C A ATT CAA GGGCGT GCTC GAGTTCAGG TTG TTA GCACACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCA GGGCAATTACTAA TCATACCA CA AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGACCAAC CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAACCAAAAAATCCA CCAAGGGTACTCAAATG CAAACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGA TTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAAAAA ] [+] EMBL BI800785 [ CA TTCTGGGAA TATTTAATGCTCCACAGTTT GGT GTATA CAAA ATT CAAAGGGGCGT GCTC GAGTTCA G TTG TTA GCA ACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCA GGGCAATTACTAA TCATACCA C AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA CAAA CCCGAATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA CAAAAAATCCA CCAAGGGTACTCAAATG CAAACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAAA ] [+] EMBL BI801066 [ TGCT CACAGTTT GGT GTATA C A ATTCCAA GGGCGT GCTC GAGTTCAGG TTG TTA GCA ACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCA GGGC ATTACTAA TCATACCA C AAA TTATGTGGTTATGAAGAAAGCAGAGCTGTGAAGGATT TCAATATGTCGCGTTTAAGA C AA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AAC A C AAAAATCCA CCAAGGGTACTCAAATG CAAACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAAAA ] [+] EMBL BI801011 [ atgGCTCCACAGTTTTGGGGT GTATA C A ATT CAAAGGGGCGTGGCTCGGAGTTCA G TTG TTA CA ACCATGGAAAGCCTGTA TTTAATGGTGTTCTTCGTCCA GGCATTTACTAA TCATACCA CA AAA TTATGTGGTTATGAAGAAA CAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA C AA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGCCAGGAAGCTCGTAGTTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AAC A C AAAAATCCC CCAAGGGTACTCAAAT C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAA CTTTGTGGA TTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A TCCCTTCATTTAAAAA ] [+] EMBL BI804591 [ AGTTT GGT GTATA C A ATT CAA GGGCGT GCTC GAGTTCAGG TTG TTA GCA ACCATGGAAAGGCTGTA TTTAATGGTGTTCTTCGTCCACGGGCCATTACTAA TCATACCACC AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TC ATATGTCGCGTTTAAGA CAAACCCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGC ATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA CAAAAAATCCA CCCAGGGTACTC AATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCC AGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAATCGATTTGTGCACTTACTCCCTTTAAA] [+] EMBL BI800818 [ GAGTTCAGG TTG TTA GCA ACCATGGAAA GCTGTATTTTAATGGTGTTCTTCGT CA GGGCAATTACTAAGTCATACCA C AAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA C AA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGC ATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AAC A CAAAAAATCCA CCAAGGGTACTCAAATG CAAACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAA ] [+] EMBL BI802590 [ G TTG TTA GCA ACCATGGAAA GCTGTA TTTAATGGTGTTCTTCGTCCA GGGCAATTACTAA TCATACCA C AAA TTATGTGGTTATGAAGAAA CAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA CAAC CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AAC A C AAAAATCCA CCAAGGGTACTCAAATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCC AGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAA ] [+] EMBL BI801616 [ TGGAAA GCTGTA TTTAATGGTGTTCTTCGTCCA GGGCAATTACTAA TCATACCACC AAA TTATGTGGTTATGAAGAAA CAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA CAAC CCC AATGCCACTGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC ACAC C AAAATCCACCCAAGGGTACTCAAATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAAAAAAA ] [+] EMBL BI804144 [ gcCTGTA TTTAATGGTGTTCTTCGTCCA GGCCAATTACTAA TCATACCA CAGAAA TTATGTGGTTATGAAGAAAGCAGAGCT TGAAGGATT TCAATATGTCGCGTTTAAGA CAAA CCCAAATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGCCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AAC C CCAAAAATCCA CCAAGGGTACTCAAATC C AACGAAAGTGAGACTCAAGAGTTGATTTAACCCCAGCAC TTATATATTAAAAAATAAAACCACATCCATAAACCTTTGTGGA TTTTGTATTTTGTCGTATGTGTAAAAGTTTAAAT AAAAAA A AT CC TCATTAAAAAAAAAA ] [+] EMBL BI801526 [ AGCT TGAAGGATT TCAATATGTCGCGTTTAAGA CAAA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGT CAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATC AACAA CAAAAAATCCA CCAAGGGTACTCAAAT C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAA A ATTGCCTTCATTTAAAAAAAAAAa ] [+] EMBL BI795732 [ TATGTCGCGTTTAAGA C AA CCC AATGCCA TGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATCAAACCA C AAAAATCCC CCAAGGGTACTCAAATGCC AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCC AGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT A ] [+] EMBL AA750888 [ AAGA CAAA CCCAAATNCCA TGGTAAACCACATCGCNGGGAAGAACTCAGTTCTCCNTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAA ] [+] EMBL BI801901 [ cAATG C AACGAAAGTGAGACTCAAGAGGTGATTTAAGCCCAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGT AAG TTAAAT AAAAAACACATT CCTTCATTTAAAAAAAAAA ] consensusID : consensus_15531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CAATGCTCACAGTTTGGTGTATACAATCTCAAGGGCGTGCTCGCAGCTCCACGGTCCGTCCACGCAACCATGGCAACAGCGCTGTATCTCAATGGTGTTCTCCGTCCAGCGGCAATCCACTAATCCATACCACACAAATTATGTGGTTATGAACGCAACACGCACCAGCTTGCAAGCGATCCTCAACTCCCAATCCGCCGCTCTAACCACACACACCCCAAAAATGCCCAATGGGTAAAACCCACACTCCGCCGGGGCAACCAACCCACCTCCCTCCGTGCAATGCCTGTGGATGTGATACGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGCAATAATAGCGGGAGAACAGATCGGTGCTTTCACTCCTACATATCAACAACAAAAAATCCACCAAGAGTACTCAAATCCAAACGAAAGTGAGACTCAAGAGGTGATTTACACCCAAGGCATTATATACTAAAAAATAAAGCCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGTAAGTTAAATAAAAAAAGAATCGCCTTCATTTAAAAACAAAAAAAAAA] [+] EMBL BQ164665 [CAATGCTCACAGTTTGGTGTATACAATCTCAAGGGCGTGCTCGCAGCTCCACGGTCCGTCCACGCAACCATGGCAACAGCGCTGTATCTCAATGGTGTTCTCCGTCCAGCGGCAATCCACTAATCCATACCACACAAATTATGTGGTTATGAACGCAACACGCACCAGCTTGCAAGCGATCCTCAACTCCCAATCCGCCGCTCTAACCACACACACCCCAAAAATGCCCAATGGGTAAAACCCACACTCCGCCGGGGCAACCAACCCACCTCCCTCCGTGCAATGCCTGTGGATGTGATACGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGCAATAATAGCGGGAGAACAGATCGGTGCTTTCACTCCTACATATCAACAACAAAAAATCCACCAAGAGTACTCAAATCCAAACGAAAGTGAGACTCAAGAGGTGATTTACACCCAAGGCATTATATACTAAAAAATAAAGCCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGTAAGTTAAATAAAAAAAGAATCGCCTTCATTTAAAAACAAAAAAAAAA] consensusID : consensus_15531#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GTGAAACAATTAAAGGGCGTGCTCGATTCAGGTGTTACAACCATGAAAGCTGTATTAATGTGTCTTCGTCAGCAATACTAATCATACCACAAATATGTGGTTATGAAGAAACAGAGCTTGAAGATTTCAATATGTCGCGTTAAGACAAACCCCAAATGCCATGGTAAACCACATCGCGGGGAAGACTCAGTTCTCCGTCATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGGAGGATTTGGTGCTTTCACTCCTAGATATTCAACACAAAATCCACCAAGGTACTCAAATGCAACGAAAGTGAGACTCAGAGGTGAATTTTAAGCCCAGCTAAATAAAAAACCCAGCATAACTTGTGATTGTATTGTCGTAGTGTAATAATTAAAAAAAGTTGCCCCTTTCAATTTTAAAA] [+] EMBL BI804078 [GTGAAACAATTAAAGGGCGTGCTCGATTCAGGTGTTACAACCATGAAAGCTGTATTAATGTGTCTTCGTCAGCAATACTAATCATACCACAAATATGTGGTTATGAAGAAACAGAGCTTGAAGATTTCAATATGTCGCGTTAAGACAAACCCCAAATGCCATGGTAAACCACATCGCGGGGAAGACTCAGTTCTCCGTCATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGGAGGATTTGGTGCTTTCACTCCTAGATATTCAACACAAAATCCACCAAGGTACTCAAATGCAACGAAAGTGAGACTCAGAGGTGAATTTTAAGCCCAGCTAAATAAAAAACCCAGCATAACTTGTGATTGTATTGTCGTAGTGTAATAATTAAAAAAAGTTGCCCCTTTCAATTTTAAAA] consensusID : consensus_15531#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TCATGCTGATACTTACAACCCTCGTGCTGGAAGGATTACAAATCTCAATAGCCAGAAGTTCTCCATTCTTAACCTTGTCCAAATGAGTGCTACAAGAGTAAATCTATACCAGAATGCTATTCTCTCACCATTCTGGAATATTAATGCTCACAGTTTGGTGTATACAATTCAAGGGCGTKCTCGAGTTCARGTTGTTAGCAACCATGGAAAGGSTGTACCTTAATGGTGTTCCTCGTCCARGGSAATTWCTCTATCATWCCACMCAAATTATGTGGGTATGAAGAGAAGCCGAGCKTGAAAGGATTTCYAATATAGTCGCGYGTTAAGASACAACCCACAATGTCATAGGTGAAACCACATMGC] [+] EMBL AA752636 [TCATGCTGATACTTACAACCCTCGTGCTGGAAGGATTACAAATCTCAATAGCCAGAAGTTCTCCATTCTTAACCTTGTCCAAATGAGTGCTACAAGAGTAAATCTATACCAGAATGCTATTCTCTCACCATTCTGGAATATTAATGCTCACAGTTTGGTGTATACAATTCAAGGGCGTKCTCGAGTTCARGTTGTTAGCAACCATGGAAAGGSTGTACCTTAATGGTGTTCCTCGTCCARGGSAATTWCTCTATCATWCCACMCAAATTATGTGGGTATGAAGAGAAGCCGAGCKTGAAAGGATTTCYAATATAGTCGCGYGTTAAGASACAACCCACAATGTCATAGGTGAAACCACATMGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15531#0 ACTATGGCATTCTCTCGATTTTCTATATGCTTTTGTGTCCTTCTCCTTTGCCATGGTTCT 60 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 ATGGCTCAGATATTTAGTCTAGGCATAAATCCATGGCAAAATCCTCGACAAGGGGGTTCT 120 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 AGGGAGTGTAGGTTTGATAGGCTCCAAGCGTTTGAGCCGCTTAGGAAAGTGAGGCATGAA 180 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 GCTGGGGTTACAGAGTACTTTGATGAGAAGAATGAGCAGTTCCAGTGCACCGGTACATTA 240 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 GTAATTCGTCGCATTATTGAGCCTCAGGGCCTTCTTTTACCTCGATACTCCAACACTCCT 300 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 GGCCTAGTATATATCATCCAAGGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCA 360 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 GCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGA 420 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 AAAAAATTAAGAGATGAAAACCAAAAGATCCACCAATTTAGGCAAGGAGATGTTGTTGCA 480 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 CTTCCTTCTGGTATACCACACTGGTTCTATAATGAGGGTGACACCCCTGTTGTTGCTTTG 540 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 TTTGTTTTTGATGTAAACAACAATGCTAATCAACTCGAACCAAGACAAAAGGAGTTCTTG 600 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 TTAGCTGGTAACAATATAGAGCAACAAGTGTCCAACCCCTCAATCAACAAACATTCTGGG 660 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 CAAAACATATTCAATGGATTCAACACTAAGCTATTAAGTGAGGCCTTAGGCGTTAACATA 720 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 GAGGTGACCAGAAGGCTACAAAGTCAAAATGACCGAAGAGGAGATATCATTCGAGTAAAG 780 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 AATGGCCTTCGATTGATAAAACCAACTATCACACAACAACAGGAACAAACACAAGATCAA 840 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 -------------------------------------------------------CAATG 5 consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 TACCCACCAATTCAATATCATAGAGAGCAACGATCAACAAGCAAATACAATGGCTTGGAT 900 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 CTCACAGTTTGGTGTATACAATCTCAAGGGCGTGCTCGCAGCTCCACGGTCCGTCCACGC 65 consensus_15531#2 -----------GTG-AAACAAT-TAAAGGGCGTGCTCG---------ATTCAGGTGTTAC 38 consensus_15531#0 GAGAACTTCTGTGCAATTAGGGCAAGGTTAAACATAGAAAACCCTAATCAT--GCTGATA 958 consensus_15531#3 -----------------------------------------------TCAT--GCTGATA 11 consensus_15531#1 AACCATGGCAACAGCGCTGTATCTCAATGGTGTTCTCCGTCCAGCGGCAATCCACTAATC 125 consensus_15531#2 AACCATGAAA-----GCTGTAT--TAATG-TGT-CTTCGTC----AGCAAT--ACTAATC 83 ** ** ** consensus_15531#0 CTTACAACCCT---CGTGCTGGAAGGATTACAAATCTCAATAGCCAGAAGT--------- 1006 consensus_15531#3 CTTACAACCCT---CGTGCTGGAAGGATTACAAATCTCAATAGCCAGAAGT--------- 59 consensus_15531#1 CATACCACACAAATTATGTGGTTATGAACGCAACACGCACCAGCTTGCAAGCGATCCTCA 185 consensus_15531#2 -ATACCACAAA---TATGTGGTTATGAA-GAAACAG-----AGCTTGAAGA--------- 124 *** ** ** * * ** ** *** * * consensus_15531#0 --TCTCCATTCTTAACCTTGTCCAAATGAGTGCTACAA---------GAGTAAA-TCTAT 1054 consensus_15531#3 --TCTCCATTCTTAACCTTGTCCAAATGAGTGCTACAA---------GAGTAAA-TCTAT 107 consensus_15531#1 ACTCCCAATCCGCCGCTCTAACCACACACACCCCAAAAATGCCCAATGGGTAAAACCCAC 245 consensus_15531#2 --TTTCAATATGTCGCGTTAAG---ACAAACCCCAAA--TGCC--ATGG-TAAA--CCAC 172 * * ** * * * * * * * **** * * consensus_15531#0 ACCA---GAATGCTATTCTCTCACCATTCT----GGAATATTAATGCTCACAGTT---TG 1104 consensus_15531#3 ACCA---GAATGCTATTCTCTCACCATTCT----GGAATATTAATGCTCACAGTT---TG 157 consensus_15531#1 ACTCCGCCGGGGCAACCAACCCACCTCCCTCCGTGCAATGCCTGTGGATGTGATACGCTA 305 consensus_15531#2 ATCGCGGGGAAG------ACTCAGTTCTCC----GTCATGCCTGTGGATGTGATA-GCTA 221 * * * ** * * ** ** * * consensus_15531#0 GTGTATA---CAATTCAAG--GGCGTGCTCG-AGTTCAGGTTGTTAGCAACCATGGAAAG 1158 consensus_15531#3 GTGTATA---CAATTCAAG--GGCGTKCTCG-AGTTCARGTTGTTAGCAACCATGGAAAG 211 consensus_15531#1 ATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGC---AATAATAGCGGGAGA 362 consensus_15531#2 ATGCATATCGCATCTCAAG-CAGGAAGCTCGTAGCTTGAAG----AATAATAGGGGAGAA 276 ** *** ** ***** * **** ** * * ** ** consensus_15531#0 GCTGTAT-TTAATGGTGTTCTTCGTCCAGGGCAATTACTA-ATCATACCACA--AATTAT 1214 consensus_15531#3 GSTGTACCTTAATGGTGTTCCTCGTCCARGGSAATTWCTCTATCATWCCACMCAAATTAT 271 consensus_15531#1 ACAGA---TCGGTGCTTTCACTCCTACATATCAACAACAAAA--AATCCACCAAGAGTAC 417 consensus_15531#2 GGAGGAT-TTGGTGCTTTCACTCCTAGATATT--CAACACAA--AATCCACCAAG-GTAC 330 * * ** * * ** * * * * * **** ** consensus_15531#0 GTGGTTATGAAGA-AAGCAGAGCTTGAAGG--A--TTTCAATAT-G---TCGCGT-TTAA 1264 consensus_15531#3 GTGGGTATGAAGAGAAGCCGAGCKTGAAAG--GATTTCYAATATAG---TCGCGYGTTAA 326 consensus_15531#1 TCAAATCCAAACGAAAGTGAGACTCAAGAGGTGATTTACACCCAAGGCATTATATACTAA 477 consensus_15531#2 TCAAATGCAA-CGAAAGTGAGACTCAGAGGTGAATTTTAAGCCCAG----------CTAA 379 * * *** * * ** * * *** consensus_15531#0 GACA--AACCCA---ATGCCA---TGGT--AAACCACATCGCGGGGAAGAACTCAGTTCT 1314 consensus_15531#3 GASAC-AACCCACA-ATGTCA---TAGGTGAAACCACATMGC------------------ 363 consensus_15531#1 AAAATAAAGCCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTATGTGTAAGTT 537 consensus_15531#2 ATAAAAAACCCA---GCATAA---CTTGTGA----TTGTATT--GTCGTA-GTGTAA--T 424 * ** *** * * consensus_15531#0 CCGTGCAATGCCTGTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCG 1374 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 AAATAAAAAAAGAATCGCCTTC--ATTTAAAAACAAAAAAAAAA---------------- 579 consensus_15531#2 AATTAAAAAAAGTTGCCCCTTTCAATTTTAAAA--------------------------- 457 consensus_15531#0 TAGCTTGAAGAATAATAGGGGAGAAGAGATTGGTGCTTTCACTCCTAGATATCAACAACA 1434 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 AAAAATCCACCAAGGGTACTCAAATGCAACGAAAGTGAGACTCAAGAGGTGATTTAAGCC 1494 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 CAAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATT 1554 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 TTGTCGTATGTGTAAGTTAAATAAAAAAAATTGCCTTCATTTAAAAAAAAAATGCACTTA 1614 consensus_15531#3 ------------------------------------------------------------ consensus_15531#1 ------------------------------------------------------------ consensus_15531#2 ------------------------------------------------------------ consensus_15531#0 CTCCCTTTAAA 1625 consensus_15531#3 ----------- consensus_15531#1 ----------- consensus_15531#2 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||