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Oryza sativa
cluster # 15539 cluster # 15539       Sequences # 22       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15539#0 length = 790 sequences # 17  
consensus_15539#1 length = 742 sequences # 5  

consensusID : consensus_15539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 790
fasta sequence
                              [CAAATCGGAAGCCGCCGAACCCTCGCTTCTCGGGGACGCGGA--GGCC-A-G-CCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG-AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG-AGTGTTGTATTTCGAAAA-CCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK121427             [CAAATCGGAAGCCGCCGAACCCTCGCTTCTCGGGGACGCGGAGCGGCC A G CCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAc                                                                                ]
[+] EMBL AA754449             [    cgaGAAGCCNCCGAACCCTCGCTTCTCGGGGACGCGGA  GKCA H H CCGRCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCACGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCACCAAGTCACACAGGGMCCGCATCCAGGMCTTCAACCAATACCTGGCAAATCTTAGC                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU070868             [                      TCGCTTCTCGGGGACGCGGA  GGCC A GACCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAG                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC06011             [                              CGGGGACGCGGA  GGCA C G CCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OS0366A              [                              CGGGGACGCGGA  CGCA C G CCGGCCACCTTCCACTG CTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAG AAAAGAAGAAGCAGCACCGCGA GAGTCATCTG AAG CGGGCAC GAGAGCTTGACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGG ACCTGCAA GCGACTATGATCACta                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C74681               [                                     GCGGA  GGCC AGG CCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTGAAAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGG ACCTGCAAGGCGACTATGATCACCTCA CCCAGCTGA AAGCG TACATGGAGCAGAAGCAGAAGATT ACATGCAT AGCTAGCC AAGTAGCC ACAAGT NCACAGGG CCG ATCCAG                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU071027             [                                     GCGGA  GGCCNA G CCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTA                                                                                                                                                                       ]
[-] EMBL CA763638             [                                        gc  GGCC A G CCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTGTGCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTTTGAGTAAAAAA      AAAAAAAAAAA                                                           ]
[+] EMBL C98008               [                                                                                                                                                          ACCAGAACGTCGTTNGGGGTAGGCTCAAGCTGAAGGGNAA GCGCTGGATGTNAAGGAAGGGGGAGTCAAGAAGAAGTAAAAGNAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGNTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGA NTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAAAAAA      AAAAAAAA                                                              ]
[-] EMBL CF314127             [                                                                                                                                                                ACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCNCCGCGAGGAGTCATCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTTTGA  AAAAA                                                                             ]
[+] EMBL AU162592             [                                                                                                                                                                                                                                                                     TCTG AAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGA NTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAAAAAA                                                                            ]
[-] EMBL CF313113             [                                                                                                                                                                                                                                                                                     GGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCGAAGTGTTGTATTTCGAAAACCCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAAAAAA      A                                                                     ]
[+] EMBL AU162610             [                                                                                                                                                                                                                                                                                                                                                                  AGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGA NTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAAAAA                                                                             ]
[+] EMBL AU164123             [                                                                                                                                                                                                                                                                                                                                                                        AGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGNAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTCT                                                                                      ]
[+] EMBL C98083               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCCNGGACTTCAACCAATACCTGGCAAATNTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTNAGAAGTTCGCAGGAATGCTTCCTATGCTGTACCNATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG NGTGTTGTATTTCGAAAA CCCAAACCATGTTTNATTCANGTGTTTGTATTCTNGGTAAAAAA      AAAAAAAA                                                              ]
[+] EMBL AA749586             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTG TCGTATTCTGAGTActgta      a                                                                     ]
[+] EMBL CF326792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATTTGGTTGTCTTCG AGTGTTGTATTTCGAAAA CCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTACTGTAGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15539#0 CAAATCGGAAGCCGCCGAACCCTCGCTTCTCGGGGACGCGGAGGCCAGCCGGCCACCTTC CACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCG ACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCT GAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCA GCACCGCGAGGAGTCATCTGAAGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGA AGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAGAAGGGAA CCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCA GAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCA GGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCC TGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGC CATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCGAG TGTTGTATTTCGAAAACCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA



consensusID : consensus_15539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 742
fasta sequence
                              [CTGGACTGAAGGAGTAGAAACGAACCCTCGCTTCTCGGGGACGCGGAGCGGCCAGCCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG-AAGCCGGGCACGGAGA-GCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGA-CTGAAGCTGATAAG-ATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAG-CCAAAGTAGCCAACAAGTCACA-CA-GGGACC-GCATCCA-GGACTTCAACCAATACCTGGC-A-AATCTTAGCGAGCACTACGACAT-CCCAAAAGTTGG-CCCTGGTTAACTTTGCCTA-TTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCA-TCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCGAGTGTTGTATTTCGAAA--CCCAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTACTGTAGTTTTCAAAAAAAAAAA]

[+] EMBL CF313112             [CTGGACTGAAGGAGTAGAAACGAACCCTCGCTTCTCGGGGACGCGGAGCGGCCAGCCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGA GCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGA CTGAAGCTGATAAG ATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAG CCAAAGTAGCCAACAAGTCACA CA GGGACC GCATCCA GGACTTCAACCAATACCTGGC A AATCTTAGCGAGCACTACGACAT CCCAAAAGTTGG CCCTGGTTAACTTTGCCTA TTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCA TCTGTTAGCTTGTGATGCT                                                                                                                    ]
[+] EMBL CF314126             [                                 CTCGGGGACGCGGAGCGGCCAGCCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCCGGGCACGGAGA GCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGA CTGAAGCTGATAAG ATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTAG CCAAAGTAGCCAACAAGTCACA CA GGGACC GCATCCA GGACTTCAACCAATACCTGGC A AATCTTAGCGAGCACTACGACAT CCCAAAAGTTGG CCCTGGTTAACTTTGCCTA TTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCA TCTGTTAGCTTGTGATGCT                                                                                                                    ]
[+] EMBL AU067995             [                                             aAGNGCCAAGCCGGCCACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATCCTGGCCGNCCTCTTTCGCTAGGCGACATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGCTCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGAAGAAGCAGCACCGCGAGGAGTCATCTG AAGCNGGGCACGGAGA GCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGA CTGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI797654             [                                                                                                                                                                                                                                                                GGAGTCATCTGTAAGCCGGGCACGGAGATGCTTCACCAA GTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGATCTGAAGCTGATAAGTATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAGAAGATTGACATGCATAAGCTA  CCAAAGTAGCCAACAAGTCACA CA GGGACCAGCATCCA GGACTTCAACCAATACCTGGCAA AATCTTAGCGAGCACTACGACAT CCC AAAGTTGG CCCT GTTAACTTTGCCTA TTCAGAGCTTCGCAGGAATGCTTCCTAT CTGTACCCATCCAGCCA TCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGTCTTCGAGTGTTGTATTTCGAAA  CCCAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTACTGTAGTTTTCAAAA       ]
[+] EMBL BM038085             [                                                                                                                                                                                                                                                                                                                                                                           GAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCCGCTGAGAGGCGTTACATGGAGCAGAANCAGAAGATTGACATGCATAAGCTAGCCCAATGTAGCCCACCAGTCACACCACGGGACC GCATCCACGGACTTCAACCCATACCTGGC ANAATCTTAGCGAGCACTACGACATGCCCCAAAGTTGGCCCCTGGTTAACTTTGCCTAGTTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCCATCCAGCCACTCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACCTTTGGTTGTCTTCGAGTGNTGTATTTCGAAAACCCCAACCCNGNTTAATTCAAGTGTTCGTATTCTGAGTACTGTAGTTTTCCAAAAAAAAAA]


>consensus_15539#1 CTGGACTGAAGGAGTAGAAACGAACCCTCGCTTCTCGGGGACGCGGAGCGGCCAGCCGGC CACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATC CTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGC TCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGA AGAAGCAGCACCGCGAGGAGTCATCTGAAGCCGGGCACGGAGAGCTTCACCAAGGTGGAA GCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAG AAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGC AGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACC GCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAG TTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCC ATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGT CTTCGAGTGTTGTATTTCGAAACCCAACCATGTTTAATTCAAGTGTTCGTATTCTGAGTA CTGTAGTTTTCAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15539#0      -----CAAATCGGAAGCCGCCGAACCCTCGCTTCTCGGGGACGCGGAG--GCCAGCCGGC 53
consensus_15539#1      CTGGACTGAAGGAGTAGAAACGAACCCTCGCTTCTCGGGGACGCGGAGCGGCCAGCCGGC 60
                            *  *  *        ****************************  **********

consensus_15539#0      CACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATC 113
consensus_15539#1      CACCTTCCACTGCCTCGAGCTCCTCTCCTTCTCCGGGTTGGTGTGGCGTGGAGATCCATC 120
                       ************************************************************

consensus_15539#0      CTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGC 173
consensus_15539#1      CTGGCCGACCTCTTTCGCTAGGCGAGATGTCTGAGTACCAGAACGTCGTTGGGGGTAGGC 180
                       ************************************************************

consensus_15539#0      TCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGA 233
consensus_15539#1      TCAAGCTGAAGGGGAAGGCGCTGGATGTGAAGGAAGGGGGAGTCAAGAAGAAGAAAAAGA 240
                       ************************************************************

consensus_15539#0      AGAAGCAGCACCGCGAGGAGTCATCTGAAGCCGGGCACGGAGAGCTTCACCAAGGTGGAA 293
consensus_15539#1      AGAAGCAGCACCGCGAGGAGTCATCTGAAGCCGGGCACGGAGAGCTTCACCAAGGTGGAA 300
                       ************************************************************

consensus_15539#0      GCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAG 353
consensus_15539#1      GCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATAAGATGGGAGAAG 360
                       ************************************************************

consensus_15539#0      AAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGC 413
consensus_15539#1      AAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGC 420
                       ************************************************************

consensus_15539#0      AGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACC 473
consensus_15539#1      AGAAGCAGAAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACC 480
                       ************************************************************

consensus_15539#0      GCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAG 533
consensus_15539#1      GCATCCAGGACTTCAACCAATACCTGGCAAATCTTAGCGAGCACTACGACATCCCAAAAG 540
                       ************************************************************

consensus_15539#0      TTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCC 593
consensus_15539#1      TTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCCTATGCTGTACCC 600
                       ************************************************************

consensus_15539#0      ATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGT 653
consensus_15539#1      ATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAAAACATTTGGTTGT 660
                       ************************************************************

consensus_15539#0      CTTCGAGTGTTGTATTTCGAAAACCCAAACCATGTTTAATTCAAGTGTTCGTATTCTGAG 713
consensus_15539#1      CTTCGAGTGTTGTATTTCGAAACCC--AACCATGTTTAATTCAAGTGTTCGTATTCTGAG 718
                       ********************** **  *********************************

consensus_15539#0      TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 773
consensus_15539#1      TACTGTAGTTTTCAAAAAAAAAAA------------------------------------ 742
                       **    *      ***********                                    

consensus_15539#0      AAAAAAAAAAAAAAAAA 790
consensus_15539#1      -----------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)