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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1019 fasta sequence
[CCTATCAGAGAAGCAGAGCCCGAGTAGAAA---ACTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG-GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT-GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT-GGTATACTTAGCCACAACAAACAAGCAGAGCAA-CC-AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT-CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT-CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTTTAT]
[+] EMBL CF302061 [CCTATCAGAGAAGCAGAGCCCACAAAGAAC ACTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTGNGGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GG ]
[+] EMBL CF296590 [ gaagGAGTAGAAA ACTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGTACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACT ]
[+] EMBL CF292924 [ GAGTAGAAAAACACTTTGCCCACACCATTCACAGCTCTCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT ]
[+] EMBL CF292626 [ CTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATNTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAAT ]
[+] EMBL AK068709 [ CATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTTTAT]
[+] EMBL CF294104 [ CGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGTGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GG ]
[+] EMBL CF292937 [ GCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAAC ]
[+] EMBL AU031911 [ AACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGATGGGTATACTTAGCCACAACAAACAAGCAGAGCAACCC AAAACTACCTTGGTCCTGNACCGCTGGAA ]
[+] EMBL OSR24241A [ ACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTNTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGC ]
[+] EMBL AK104134 [ CACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTTTAT]
[-] EMBL CK085216 [ ATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAaaaaa ]
[-] EMBL CF294103 [ AGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CCAAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAaa ]
[-] EMBL CF292923 [ AGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAAAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAaaaa ]
[-] EMBL CF296591 [ GAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAa ]
[+] EMBL AU031912 [ aAATTTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAaaaaaa ]
[+] EMBL AU173362 [ AGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAaaaaaa ]
consensusID : consensus_15554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence
[CACCCTGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGG-AGTTCCCCG-GGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCAGATAATCAGATGTGTACTTGTAATCCTGTATCCTAACTTCCTAAGGTATTTAAGAATGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCATTGAGATACCGAGATCGATCTGAACTCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTT-GTTTGTGATATGCAAAAT-GGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCATCTTTTTATGCTGTTCTGCAGGCCAAGTAACCCTGTTCTCAGTGCATACATTGAATTTGTAAATGAATCTCTT]
[+] EMBL CB621128 [CACCCTGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGG AGTTCCCCG GGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCAGATAATCAGATGTGTACTTGTAATCCTGTATCCTAACTTCCTAAGGTATTTAAGAATGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCATTGAGATACCGAGATCGATCTGAACTCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTT GTTTGTGATATGCAAAAT GGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCATCTTTTTATGCTGTTCTGCAGGCCAAGTAACCCTGTTCTCAGTGCATACATTGAATTTGTAAATGAATCTCTT]
[+] EMBL AU056816 [ ACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGG AGTTCCCCG GGAGGACCGTCACGCTCGAGCACNAGCCCGGCGCCACATNCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATNTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCAGATAATCAGATGTGTACTTGTAATCCTGTATCCNAACTTCCTAAGGTATTTAAGAATGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCANTGAGATACCGAGATCGATCTGAACNCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTTGGTTTGTGATATGCAAAATGGGACTAATGATCTCATAGCTAa ]
[+] EMBL CB675833 [ GCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGTAGTTCCCCGCGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCACATAATCAGATGTGTACTTGTAATCCTGTATCCTAACTTCCTAAGGTATTTAAGAGTGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCATTGAGATACCGAGATCGATCTGAACTCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTT GTTTGTGATATGCAAAAT GGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCATCTTTTTATGCTGTTCTGCAGGCCAAGTAACCCTGTTCTCAGTGCATACATTGAATTTGTAAATG ]
consensusID : consensus_15554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 794 fasta sequence
[ATATGATTCAATATAGCCAAATGATAACTACTCTGAAAATGCGATATTGTCCCAGATGGTCATCTGAATGAACTCAGATAAATGTTATCTAGATGCCATCCCTCTTTATGGGCCTTATGGCAGCCTGAGAACTGAAGTAACAATACCTTAATCAGTGCTTTATAAACTGACTTTCAGTTGCTTACCTTGCTTGCATATTTACCTTCAGATTTGAATTGCAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGAGCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB675834 [ATATGATTCAATATAGCCAAATGATAACTACTCTGAAAATGCGATATTGTCCCAGATGGTCATCTGAATGAACTCAGATAAATGTTATCTAGATGCCATCCCTCTTTATGGGCCTTATGGCAGCCTGAGAACTGAAGTAACAATACCTTAATCAGTGCTTTATAAACTGACTTTCAGTTGCTTACCTTGCTTGCATATTTACCTTCAGATTTGAATTGCAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGAGCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTC ]
[-] EMBL CF292625 [ CAGAGCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTTTTTTTTACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF292938 [ GAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_15554#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[AATTCGGCACGAGGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTAAAAAAAAAAAAA]
[+] EMBL CA754049 [AATTCGGCACGAGGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15554#2 ------------------------------------------------------------
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 CCTATCAGAGAAGCAGAGCCCGAGTAGAAAACTCTGCCCACACCATTCACAGCTCGCATC 60
consensus_15554#1 ------------------------------------------------------------
consensus_15554#2 ------------------------------------------------------------
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 GCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGC 120
consensus_15554#1 -CACCCTGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGC 59
consensus_15554#2 ---------------ATATGATTCAATATAGCCAAATGATAACTACTCTGAAAATGCGAT 45
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 GATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCG 180
consensus_15554#1 GATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCG 119
consensus_15554#2 ATTGTCCCAGATGGTCATCTGAATGAACTCAGATAAATGTTATCTAGATGCCATCCCTCT 105
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 CCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAG 240
consensus_15554#1 CCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAG 179
consensus_15554#2 TTATGGGCCTTATGGCAGCCTGAGAACTGAAGTAACAATACCTTAATCAGTGCTTTATAA 165
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 GGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCG-GCGCCACAT 299
consensus_15554#1 GGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCG-GCGCCACAT 238
consensus_15554#2 ACTGACTTTCAGTTGCTTACCTTGCTTGCATATTTACCTTCAGATTTGAATTGCAGCATC 225
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 GCTGGGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATC 359
consensus_15554#1 GCGTAACGCTTCTCTCTCATATGTTCTT------------------------------TG 268
consensus_15554#2 TGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCT 285
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 TGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCT 419
consensus_15554#1 TTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTAC- 327
consensus_15554#2 CACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGA 345
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 CACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGA 479
consensus_15554#1 ---------------------ATTATGCTTTAAGATGCTTCTTTGTTGT-------TGTT 359
consensus_15554#2 GCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAG 405
consensus_15554#3 ------------------------------------------------------------
consensus_15554#0 GCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAG 539
consensus_15554#1 GTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTG---AGGTACTACTGGTCAG 416
consensus_15554#2 CTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACA 465
consensus_15554#3 ---------------AATTCGGCACGAGGT------TCAAACTTGAGGATGCATTGAACA 39
consensus_15554#0 CTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACA 599
consensus_15554#1 CC--ATGCTAATAAGGAGTAAGTATGAGTT------TGTGTATCAGTGATCGGATGAAAA 468
* * * * * *** **** *
consensus_15554#2 AAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCC-- 523
consensus_15554#3 AAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCC-- 97
consensus_15554#0 AAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCC-- 657
consensus_15554#1 CAATGATCATCAGATAATCAGATGT---GTACTTG--TAATCCTGTATCCTAACTTCCTA 523
*** * * ** **** * * ** *** **** * * ***
consensus_15554#2 AGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATA 583
consensus_15554#3 AGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATA 157
consensus_15554#0 AGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATA 717
consensus_15554#1 AGGTATTTAAGAATGG-GCTATAAGGGGAGACCTTTCTGCAGT----AATGGTAAAAGAG 578
** * * * ** *** * * * * * ** * * * *******
consensus_15554#2 TAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACA 643
consensus_15554#3 TAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACA 217
consensus_15554#0 TAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACA 777
consensus_15554#1 TGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATG-----------GTCATTGAGA--- 624
* * ** * ** * ** * *** ** * ** *
consensus_15554#2 GCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTT 703
consensus_15554#3 GCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTT 277
consensus_15554#0 GCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTT 837
consensus_15554#1 -----TACCGAGATCGATCTG-AACTCTGAAGGGTGGTACAAA--TGGTAAAAAAGGAGC 676
* **** ** * * * ** * * ** *** *** * * ** ** *
consensus_15554#2 AAGTTGGGGGTATG-AAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTA 762
consensus_15554#3 AAGTTGGGGGTATG-AAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTA 336
consensus_15554#0 AAGTTGGGGGTATG-AAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTA 896
consensus_15554#1 TTGTTTGTGATATGCAAAATGGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCA 736
*** * * **** **** * * ** * * * * * * **** ** *
consensus_15554#2 CTTTCAAAAAAAAAAAAA--------------AAAAAAAAAAAAAA-------------- 794
consensus_15554#3 CTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGT 396
consensus_15554#0 CTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGT 956
consensus_15554#1 TCTTT----TTATGCTGTTCTGCAGGC------CAAGTAACCCTGTTCTCAGTGCATACA 786
** * * **
consensus_15554#2 ------------------------------------------------------------
consensus_15554#3 CTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTAAAAAAAAAAA 456
consensus_15554#0 CTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTT 1016
consensus_15554#1 TTGA--ATTTGTAAATGAATCTCTT----------------------------------- 809
consensus_15554#2 ---
consensus_15554#3 AA- 458
consensus_15554#0 TAT 1019
consensus_15554#1 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||