|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[GGTGAACACTATTCGTTCTACCATAGGCTGGTGAGTAACTAACACCTCTGATCAAGAGAGGTGGAGCAGAGAAAGTGGCAGCAGCCCTCACCCCCGACTGATGTATTCCCCTCCCTGCAGTGCTGCTGCAAGCAGCCAAGGGCATTGTTTCGCGGTCGGAGCTAACCAGCTTGCTTCGCTTGACCTTGCCATGGACTTCGACGAGCCTATCCTTTTTCCTGTGCATAATGCAAGTTTGCAAGAGGGGATTCAGTTTTACAATCCTACCGGCGATACTCAGCTAAGTAGAAACATGAGCATTGACAAGTGTTTGAAGGGCAGTAAAAGGAAGGGCTCAGGCGAGGGCAGTTCATCGCTACATTCCCAAGAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCGGAGAGAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTACGTGCATGTCCGGGCAAAACGCGGCCAGGCGACCAACAGCCACAGCCTTGCAGAAAGATTTCGAAGGGAGAAGATAAACGAAAGGATGAAGCTTCTGCAGGACCTCGTCCCAGGATGGCACNAGATTACAGGGAAGGCCATGATGCTC]
[+] EMBL CA756178 [GGTGAACACTATTCGTTCTACCATAGGCTGGTGAGTAACTAACACCTCTGATCAAGAGAGGTGGAGCAGAGAAAGTGGCAGCAGCCCTCACCCCCGACTGATGTATTCCCCTCCCTGCAGTGCTGCTGCAAGCAGCCAAGGGCATTGTTTCGCGGTCGGAGCTAACCAGCTTGCTTCGCTTGACCTTGCCATGGACTTCGACGAGCCTATCCTTTTTCCTGTGCATAATGCAAGTTTGCAAGAGGGGATTCAGTTTTACAATCCTACCGGCGATACTCAGCTAAGTAGAAACATGAGCATTGACAAGTGTTTGAAGGGCAGTAAAAGGAAGGGCTCAGGCGAGGGCAGTTCATCGCTACATTCCCAAGAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCGGAGAGAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTACGTGCATGTCCGGGCAAAACGCGGCCAGGCGACCAACAGCCACAGCCTTGCAGAAAGATTTCGAAGGGAGAAGATAAACGAAAGGATGAAGCTTCTGCAGGACCTCGTCCCAGGATGGCACNAGATTACAGGGAAGGCCATGATGCTC]
consensusID : consensus_1556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[GACTTCGGCACGAGCTCAGGCGAGGGCAGTTCATCGCTACATTCCCAANAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCGGAGAGAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTNCGTGCATGTCCGGGCAAAACGCGGCCAGGCGACCAACAGCCACAGCCTTGCAGAAAGATTTCNAAGGGAGAANATNAACGAAAGGATNAAGCTTCTGCAGGACCTCNTCCCAGGATGCNACNAGATTNCAGGGAANGCCNTGATGCTCGACCAGATCNTAAACTACGTCCNGTCTCTTNTNCNACAGGTNNAGTTCCTCTCGATGAANCTCTCGACAATCNNTCCTGANTTGAACTCTGACCTCCACCTGCAAGATATCCTTTGTTCACNAGATGCTCNCTCCNCATTTCTGGGATGCACCCNCAATTNAACNATGCCCNTCCTNNCCTTTNCNNGGCGGNTCNN]
[+] EMBL AA753077 [GACTTCGGCACGAGCTCAGGCGAGGGCAGTTCATCGCTACATTCCCAANAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCGGAGAGAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTNCGTGCATGTCCGGGCAAAACGCGGCCAGGCGACCAACAGCCACAGCCTTGCAGAAAGATTTCNAAGGGAGAANATNAACGAAAGGATNAAGCTTCTGCAGGACCTCNTCCCAGGATGCNACNAGATTNCAGGGAANGCCNTGATGCTCGACCAGATCNTAAACTACGTCCNGTCTCTTNTNCNACAGGTNNAGTTCCTCTCGATGAANCTCTCGACAATCNNTCCTGANTTGAACTCTGACCTCCACCTGCAAGATATCCTTTGTTCACNAGATGCTCNCTCCNCATTTCTGGGATGCACCCNCAATTNAACNATGCCCNTCCTNNCCTTTNCNNGGCGGNTCNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1556#0 GGTGAACACTATTCGTTCTACCATAGGCTGGTGAGTAACTAACACCTCTGATCAAGAGAG 60
consensus_1556#1 ------------------------------------------------------------
consensus_1556#0 GTGGAGCAGAGAAAGTGGCAGCAGCCCTCACCCCCGACTGATGTATTCCCCTCCCTGCAG 120
consensus_1556#1 ------------------------------------------------------------
consensus_1556#0 TGCTGCTGCAAGCAGCCAAGGGCATTGTTTCGCGGTCGGAGCTAACCAGCTTGCTTCGCT 180
consensus_1556#1 ------------------------------------------------------------
consensus_1556#0 TGACCTTGCCATGGACTTCGACGAGCCTATCCTTTTTCCTGTGCATAATGCAAGTTTGCA 240
consensus_1556#1 ------------------------------------------------------------
consensus_1556#0 AGAGGGGATTCAGTTTTACAATCCTACCGGCGATACTCAGCTAAGTAGAAACATGAGCAT 300
consensus_1556#1 ------------------------------------------------------------
consensus_1556#0 TGACAAGTGTTTGAAGGGCAGTAAAAGGAAGGGCTCAGGCGAGGGCAGTTCATCGCTACA 360
consensus_1556#1 -------------------GACTTCGGCACGAGCTCAGGCGAGGGCAGTTCATCGCTACA 41
* * * ****************************
consensus_1556#0 TTCCCAAGAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCGGAGA 420
consensus_1556#1 TTCCCAANAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCGGAGA 101
******* ****************************************************
consensus_1556#0 GAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTACGTGCATGTCCGGGCAAAACGCGG 480
consensus_1556#1 GAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTNCGTGCATGTCCGGGCAAAACGCGG 161
*********************************** ************************
consensus_1556#0 CCAGGCGACCAACAGCCACAGCCTTGCAGAAAGATTTCGAAGGGAGAAGATAAACGAAAG 540
consensus_1556#1 CCAGGCGACCAACAGCCACAGCCTTGCAGAAAGATTTCNAAGGGAGAANATNAACGAAAG 221
************************************** ********* ** ********
consensus_1556#0 GATGAAGCTTCTGCAGGACCTCGTCCCAGGATGGCACNAGATTACAGGGAAGGCCATGAT 600
consensus_1556#1 GATNAAGCTTCTGCAGGACCTCNTCCCAGGATGCNACNAGATTNCAGGGAANGCCNTGAT 281
*** ****************** ********** ******** ******* *** ****
consensus_1556#0 GCTC-------------------------------------------------------- 604
consensus_1556#1 GCTCGACCAGATCNTAAACTACGTCCNGTCTCTTNTNCNACAGGTNNAGTTCCTCTCGAT 341
****
consensus_1556#0 ------------------------------------------------------------
consensus_1556#1 GAANCTCTCGACAATCNNTCCTGANTTGAACTCTGACCTCCACCTGCAAGATATCCTTTG 401
consensus_1556#0 ------------------------------------------------------------
consensus_1556#1 TTCACNAGATGCTCNCTCCNCATTTCTGGGATGCACCCNCAATTNAACNATGCCCNTCCT 461
consensus_1556#0 ---------------------
consensus_1556#1 NNCCTTTNCNNGGCGGNTCNN 482
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||