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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1064 fasta sequence
[TTCCGCTCCAGAGGCTTCACAGCTTTCTCCTCCCGTAGAGCCAAGCCAACCAAGCGGGAGCAGCATGGCTACGGCCACGTCGACGGCGACGAGCGTGGCGGCGGCGCTCCTCCTCTCGCTCCTCCTGGCGCGCGCGCGGGGCGACGACGACTACTCGGGGTTCGTGTACGCCGGGTGCTCGCAGGGGCGCTACGCCTCCGGCACGCAGTACGCGTCGGACGTCGACTCCGTGCTCACCTCCGTCGCCAACAGCGCGCCCTACTCCCCCTACGCCAACTTCACCTCGCCGACGTCGAACTCGGTGGTCGGCGTCTACCAGTGCCGCTCCGACCTCCCGGCCTCCGTTTGCACCGGCTGCGTCCGCTCCGCCATCTCCAGGCTCTCCTCGCTCTGCGCCTGGGCCACCGGCGGCGCCGTGCAGCTGCGGGCCTGCTTCGTGCGCTACGGCAACGACACGTTCCTCGGGAAGCAGGACACGGCCGTGCTGTTCAAGAAGTGCGGCGGCTCGCCGGGGGACGCCGGCGGCGCCGCCATGCGGGACTCGGCGCTCGGCGCGCTCGTGGCCGCCGCGGCGCCCGCCGGGGGAGGCTACCGCGCCGGCGGGTCCGGGGGCGTGCAGGCCATGTCGCAGTGCGTGGGGGACCTCGGCGCCAAGGCCTGCTCCGACTGCGTCTCGGCCGCCGCCGGCCAGCTCAAGGCCGGCTGCGGCTACGCCACGGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGGGGAACGGGGGCGGTGGATTCAGCAGCGGCGCCGCCGGGGACGCGTACGGATCTGGGCATCGCGTGTCCGGCAACCGGTTCGTTCTCTCCGTCGCCGGCGGTTTCTTCACTTCCTTGGCCTATATATTTGTACTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGACTACTAGAGTGCCTGTGTCTGTGTGCTTTATGCGTGGTATGTAACCACTAATCAGCATATCTGCATATGTGATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAATTAAACTTGATGC]
[+] EMBL AK109142 [TTCCGCTCCAGAGGCTTCACAGCTTTCTCCTCCCGTAGAGCCAAGCCAACCAAGCGGGAGCAGCATGGCTACGGCCACGTCGACGGCGACGAGCGTGGCGGCGGCGCTCCTCCTCTCGCTCCTCCTGGCGCGCGCGCGGGGCGACGACGACTACTCGGGGTTCGTGTACGCCGGGTGCTCGCAGGGGCGCTACGCCTCCGGCACGCAGTACGCGTCGGACGTCGACTCCGTGCTCACCTCCGTCGCCAACAGCGCGCCCTACTCCCCCTACGCCAACTTCACCTCGCCGACGTCGAACTCGGTGGTCGGCGTCTACCAGTGCCGCTCCGACCTCCCGGCCTCCGTTTGCACCGGCTGCGTCCGCTCCGCCATCTCCAGGCTCTCCTCGCTCTGCGCCTGGGCCACCGGCGGCGCCGTGCAGCTGCGGGCCTGCTTCGTGCGCTACGGCAACGACACGTTCCTCGGGAAGCAGGACACGGCCGTGCTGTTCAAGAAGTGCGGCGGCTCGCCGGGGGACGCCGGCGGCGCCGCCATGCGGGACTCGGCGCTCGGCGCGCTCGTGGCCGCCGCGGCGCCCGCCGGGGGAGGCTACCGCGCCGGCGGGTCCGGGGGCGTGCAGGCCATGTCGCAGTGCGTGGGGGACCTCGGCGCCAAGGCCTGCTCCGACTGCGTCTCGGCCGCCGCCGGCCAGCTCAAGGCCGGCTGCGGCTACGCCACGGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGGGGAACGGGGGCGGTGGATTCAGCAGCGGCGCCGCCGGGGACGCGTACGGATCTGGGCATCGCGTGTCCGGCAACCGGTTCGTTCTCTCCGTCGCCGGCGGTTTCTTCACTTCCTTGGCCTATATATTTGTACTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGACTACTAGAGTGCCTGTGTCTGTGTGCTTTATGCGTGGTATGTAACCACTAATCAGCATATCTGCATATGTGATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAATTAAACTTGATGC]
consensusID : consensus_1561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CGGGTACGCCTCTGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGTCCAATGCCGGCACCGGGGACAACAACGGAGGCGGCGTCAGCGGCGGCGGTGGCGGCATTGGCGGCGGCGGGAATGGCATCAATGGCGGCGGCGGCGCTGTGGGCGGCGGCAATGGATACGCATATGGATTTGTGCCGCACACGTACAGTGACCACGATGAATCTGGGAAAACCCTTGCAATCATCATCGGCCTCGTCGCGGCTGTCGCCCTAGTCATCGTCTTCCTCTCCTTCGTCAGAAGAGCCGGTGGTGTCGGTGGCAAAAGCTAAGGGTGAGCAGGATGGTCACCACTTAGCTCAAATTGGATCGGTCAGTGTGGCTTTTTCTTGGGCATCGCTTTGGTATCTCTCCTACACATCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAAAGAGGAAGCCATGCCGAAATGACCTAAGCTGAAAGGAACCCACTGTGCTGAAGTGTGCGGTGAAGATTCCAGCTGCTACCTGCAACTACCCACTANGGGAAAATGACTCAAAAAAATAATCAAGGAGTAAATAAAGTGTGGTGTCTACCTGTTAGATAATCTGT]
[+] EMBL CA753580 [CGGGTACGCCTCTGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGTCCAATGCCGGCACCGGGGACAACAACGGAGGCGGCGTCAGCGGCGGCGGTGGCGGCATTGGCGGCGGCGGGAATGGCATCAATGGCGGCGGCGGCGCTGTGGGCGGCGGCAATGGATACGCATATGGATTTGTGCCGCACACGTACAGTGACCACGATGAATCTGGGAAAACCCTTGCAATCATCATCGGCCTCGTCGCGGCTGTCGCCCTAGTCATCGTCTTCCTCTCCTTCGTCAGAAGAGCCGGTGGTGTCGGTGGCAAAAGCTAAGGGTGAGCAGGATGGTCACCACTTAGCTCAAATTGGATCGGTCAGTGTGGCTTTTTCTTGGGCATCGCTTTGGTATCTCTCCTACACATCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAAAGAGGAAGCCATGCCGAAATGACCTAAGCTGAAAGGAACCCACTGTGCTGAAGTGTGCGGTGAAGATTCCAGCTGCTACCTGCAACTACCCACTANGGGAAAATGACTCAAAAAAATAATCAAGGAGTAAATAAAGTGTGGTGTCTACCTGTTAGATAATCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1561#0 TTCCGCTCCAGAGGCTTCACAGCTTTCTCCTCCCGTAGAGCCAAGCCAACCAAGCGGGAG 60
consensus_1561#1 ------------------------------------------------------------
consensus_1561#0 CAGCATGGCTACGGCCACGTCGACGGCGACGAGCGTGGCGGCGGCGCTCCTCCTCTCGCT 120
consensus_1561#1 ------------------------------------------------------------
consensus_1561#0 CCTCCTGGCGCGCGCGCGGGGCGACGACGACTACTCGGGGTTCGTGTACGCCGGGTGCTC 180
consensus_1561#1 ------------------------------------------------------------
consensus_1561#0 GCAGGGGCGCTACGCCTCCGGCACGCAGTACGCGTCGGACGTCGACTCCGTGCTCACCTC 240
consensus_1561#1 ------------------------------------------------------------
consensus_1561#0 CGTCGCCAACAGCGCGCCCTACTCCCCCTACGCCAACTTCACCTCGCCGACGTCGAACTC 300
consensus_1561#1 ------------------------------------------------------------
consensus_1561#0 GGTGGTCGGCGTCTACCAGTGCCGCTCCGACCTCCCGGCCTCCGTTTGCACCGGCTGCGT 360
consensus_1561#1 ------------------------------------------------------------
consensus_1561#0 CCGCTCCGCCATCTCCAGGCTCTCCTCGCTCTGCGCCTGGGCCACCGGCGGCGCCGTGCA 420
consensus_1561#1 ---------------------------------CGGGTACGCCTCTGCCGGCGAGGTGTA 27
** * *** * * ***** *** *
consensus_1561#0 GCTGCGGGCCTGCTTCGTGCGCTACGGCAACGACACGTTCCTCGGGAAGCAGGACACGGC 480
consensus_1561#1 CCTCGGCAAGTGCTACGCGCGCTTCTGGTCCAATGCCGGCACCGGGGA-CAACA-ACGGA 85
** * **** ** ***** * * * * * * **** * ** * ****
consensus_1561#0 CGTGCTGTTCAAGAAGTGCGGCGGCTCGCCGGGGGACGCCGGCGGCGCCGCCATGCGGGA 540
consensus_1561#1 GGCGGCGTCAGCG----GCGGCGGT------GGCGGCATTGGCGGCG-------GCGGGA 128
* * ** * ******* ** * * ******* ******
consensus_1561#0 CTCGGCGCTCGGCGCGCTCGTGGCCGCCGCGGCGCCCGCCGGGGGAGGCTACCGCGCCGG 600
consensus_1561#1 ATGG----------CATCAATGGCGGCGGCGGCG----CTGTGGGCGGCGGCAATGGATA 174
* * * **** ** ****** * * *** *** * *
consensus_1561#0 CGGGTCCGGGGGCGTGCAGGCCATGTCGCAGTG--CGTGGGGGACCTCGGCG--CCAAGG 656
consensus_1561#1 CGCATATGGATTTGTGCCGCACACGT-ACAGTGACCACGATGAATCTGGGAAAACCCTTG 233
** * ** **** * ** ** ***** * * * * ** ** ** *
consensus_1561#0 CCTGCTCCGACTGCGTCTCGGCCGCCGCCGGCCAGCTCAAGGCCGGCTGCGGCTACGCCA 716
consensus_1561#1 CAATCATCATCGGCCTCGTCGCGGCTGTCGCCCTAGTCATCGTCTTCCTCTCCTTCGTCA 293
* * * * ** ** ** ** * ** ** *** * * * * ** ** **
consensus_1561#0 CGGCCGGCGA-GGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGGGGAACGGGGGCGGT 775
consensus_1561#1 GAAGAGCCGGTGGTGT-CGGTGGCAAAAGCTAAGGGTG-----AGCAGGATGGTCACCAC 347
* ** ***** * ***** **** * * * * * * ** *
consensus_1561#0 GGATTCAGCAGCGGCGCCGCCGGGGACGCGTACGGATCTGGGCATCGC----GTGTC-CG 830
consensus_1561#1 TTAGCTCAAATTGGATCGGTCAGTGTGGCTTTT--TCTTGGGCATCGCTTTGGTATCTCT 405
* * ** * * * * * ** * ********** ** ** *
consensus_1561#0 GCAACCGGTTCGTTCTCTCCGTCGCCGGCGGTTTCTTCACTTCCTT---GGCCTATATAT 887
consensus_1561#1 CCTACACATCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAA 465
* ** * ** * ** * * * *** ** ** ** **** * * *
consensus_1561#0 TT--GTACTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGA 945
consensus_1561#1 AGAGGAAGCCATGCCGA-AATGACCTA-AGCTG-AAAGGAACCCACTGTGCTGAAGTGTG 522
* * **** * * *** ** ** ** * * * * * **** *
consensus_1561#0 CTACTAGAGTGCCTGTGTCTGTGTGCTTTATGCGTGGTATGTAACCACTAATCAGCATAT 1005
consensus_1561#1 CGGTGAAGATTCCAGCTGCTACCTGCAAC-TACCCACTANGGGAAAATGACTCAAAAAAA 581
* * * ** * ** *** * * ** * * * * *** * *
consensus_1561#0 CTGCATATGTG-ATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAATTAAACTTGATGC 1064
consensus_1561#1 TAATCAAGGAGTAAATAAAGTGTGGTGTCTACCTG---TTAGATAATCTGT--------- 629
* * * * * * * * ** * ** ** * ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||