These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1486 fasta sequence [CACTGACATCGACTGAAGGAGTA-AAAA---CCACTCCGCTCGCTTAACACACCTGCCCGAATTCGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT-TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG-GAGTCGC--GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC-GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTG--A-CGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACA-TTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAAAAAAAAAAAAAACA-CTGTGCCTTTTCAGCTCCTTGCAATAGCTAATTTTAGGCTTACATTTGATCTTTTGTTTC] [+] EMBL CF321740 [CACTGACATGGACCGAAGGAGTA AAAA CCACTCCGCTCGCTTAACACACCTGCCCGAATTCGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGC ] [+] EMBL CF317237 [ CATCGACTGAAGGAGTAGAAAATGCCCACTCCGCTCGCTTAACACACCTGCCCGAATTCGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC ] [+] EMBL CF316725 [ CATCGACTGAAGGAGTAGAAAATGCCCACTCCGCTCGCTTAACACACCTGCCCGAATTCGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCC ] [+] EMBL CB659348 [ ACACACCTGCCCGAATTCGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTT ] [+] EMBL CB649332 [ ACCTGCCCGAATTCGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGTATCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATC ] [+] EMBL CB653108 [ CAATCCCCCTGAACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGACGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCCTTCCTTGGGGAGTTC ] [+] EMBL CF307545 [ GCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCGNGAGTCGC GGNGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTT ] [+] EMBL CF307549 [ GCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCGACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGCCGGGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCC ] [+] EMBL CF313211 [ CCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAGAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGA ] [+] EMBL CF311864 [ CCCCAGAACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCGCGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCA ] [+] EMBL CF315137 [ AACTCAGCTAAGCTCGCGT TCGTTTTCGCAAGGAGCAGA GAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCC GGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGT ] [+] EMBL CB667075 [ CGT TCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGATCACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAGCAGGGCCGGCACCCG GAGTCGC GGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCAGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAGATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTAC ] [+] EMBL AY035554 [ GGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAGTGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACT ] [+] EMBL AF378182 [ GGTGTCTCCATCGGGACGATCTTTGGGATTTACATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAGTGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTC ] [-] EMBL CF321741 [ CAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGTTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGAAA AAAAGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACATTTTTTTTTTGCCTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACAAAAAAAAAAAAAAAACA CT ] [+] EMBL CA758867 [ ATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTG ACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACA TTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACAT AATTTGATTGGAACATAAGTGCCTTTTCAGCTCCTTGCAATAGCTAATTTTAGGCTTACATTTGATCTTTTGTTTC] [-] EMBL CF307546 [ GATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTG A CAAAAAAACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACA TTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAAAAAAAA ] [-] EMBL CF317238 [ CCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTG ACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACA TTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAAAAAAAAA ] [-] EMBL CF313212 [ CCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTG ACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACA TTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAAAAAA ] [-] EMBL CF316726 [ CATGAATCACCCTCTACCTTGTGAACATAGACA TTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAAAAAAAAA ] consensusID : consensus_15612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 805 fasta sequence [CGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGGTCTGTGATTCAACAATGCAATTCTTGTTCTTAATTGGATTGGTCATGGATCAAAACAAAATGGCCATTTTTGGCACCTGTACTGTACTCTTCTTTTTGTGTAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAATTTGATTGGAACATAAAAAAAAAAAAAAAAA] [-] EMBL CB650552 [CGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGGTCTGTGATTCAACAATGCAATTCTTGTTCTTAATTGGATTGGTCATGGATCAAAACAAAATGGCCATTTTTGGCACCTGTACTGTACTCTTCTTTTTGTGTAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACA ] [-] EMBL CF311865 [ TCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACA TTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATAAAGGAATATGATTCTTACATAATTTGATTGGAACATAAAAAAAAAAAAAAAAA] consensusID : consensus_15612#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [CCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATAATTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGACCGGTGTTTCTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATGAAGGAATATGATTCTTACATAATTTGATTGGA] [-] EMBL CB653109 [CCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACATCGGAAGTATAATTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGCAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGACCGGTGTTTCTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAGACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACCAATATGAAAGAATGAAGGAATATGATTCTTACATAATTTGATTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15612#0 CACTGACATCGACTGAAGGAGTAAAAACCACTCCGCTCGCTTAACACACCTGCCCGAATT 60 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 CGTCCAATCCATCTGCACCCGCGCCCGTGTCCCTCTCGCGCCACAGGACAAGGCCTCCCG 120 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 ACCGCCGCTACCTCCTCATCTCCTCTCCGAGTCCTCGCACGGTCGTCACAGTCACCCCCA 180 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 GAACTCAGCTAAGCTCGCGTTCGTTTTCGCAAGGAGCAGAGGAGGAGGGGAGAGATGGAT 240 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 CACGCGGCGGAGGCGCAGAGGACGGACCTGATGACGATCACGCGGCACGTGCTGAACGAG 300 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 CAGGGCCGGCACCCGGAGTCGCGGGGGGACTTCACCATCCTACTCTCCCACATCGTCCTC 360 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 GGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTC 420 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 GCCGGCGACACCAACGTCCAGGGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAA 480 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 GTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGTGTGTTCTTGTGTCTGAAGAGAAC 540 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 GAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAGTATTGCGTTTGTTTTGATCCA 600 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 ------------------------------------------------------------ consensus_15612#0 CTGGATGGCTCCTCAAATATCGATTGTGGTGTCTCCATCGGGACGATCTTTGGGATTTAC 660 consensus_15612#2 ------------------------------------------------------------ consensus_15612#1 --------------------------------------CGGGAGTTCATGCACGCTTGTG 22 consensus_15612#0 ATGATTAAAGACAA-GGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACAT 719 consensus_15612#2 ----------------------------------------------CCTGGAACAGACAT 14 consensus_15612#1 TTGAGCACTGGAAATGGAGTAAACGGTTTCACCCTTGATCCTTCC-CTTGGGGAGTTCAT 81 * *** *** consensus_15612#0 GCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAA 779 consensus_15612#2 GCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGCTTGTGTTGAGCACTGGAAA 74 consensus_15612#1 TCTGACTCATCCAAACATCAAGGTCTGTGATTCAACAATGCAATTCTTGTTCTT---AAT 138 ** ** * ** ** * * * **** * ** * *** * ** consensus_15612#0 TGGAGTAA--ACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCA 837 consensus_15612#2 TGGAGTAA--ACGGTTTCACCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCA 132 consensus_15612#1 TGGATTGGTCATGGATCAAAACAAAATGGCCATTTTTGGCACCTGTACTGTACTCTTCTT 198 **** * * ** * * * ** ** ** * * **** ** consensus_15612#0 AACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAAT 897 consensus_15612#2 AACATCAAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAAT 192 consensus_15612#1 TTTGTGTAGATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAAT 258 * ***************************************************** consensus_15612#0 TGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCT 957 consensus_15612#2 TGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCT 252 consensus_15612#1 TGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCT 318 ************************************************************ consensus_15612#0 TCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATAT 1017 consensus_15612#2 TCTAAATCCTTGAGATACATCGGAAGTATAATTGCTGATGTCCACCGTACTTTGCTATAT 312 consensus_15612#1 TCTAAATCCTTGAGATACATCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATAT 378 ***************************** ***************************** consensus_15612#0 GGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTG 1077 consensus_15612#2 GGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTG 372 consensus_15612#1 GGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGTGTTCTG 438 ************************************************************ consensus_15612#0 TACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGC 1137 consensus_15612#2 TACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGC 432 consensus_15612#1 TACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGGC 498 ************************************************************ consensus_15612#0 AAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTG 1197 consensus_15612#2 AAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTG 492 consensus_15612#1 AAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTG 558 ************************************************************ consensus_15612#0 GGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGT 1257 consensus_15612#2 GGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGT 552 consensus_15612#1 GGGAGCTATGATGACGTGGAGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGT 618 ************************************************************ consensus_15612#0 TGAC-GGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAG 1316 consensus_15612#2 TGACCGGTGTTTCTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAG 612 consensus_15612#1 TGACCGGTGTTACTGAAGAGTAAAAGGACACATGAATCACCCTCTACCTTGTGAACATAG 678 **** ****** ************************************************ consensus_15612#0 ACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACC 1376 consensus_15612#2 ACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACC 672 consensus_15612#1 ACATTTTTTTTTGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCACC 738 ************************************************************ consensus_15612#0 AATATGAAAGAATAAAGGAATATGATTCTTACATAAAAAAAAAAAAAACACTGTGCCTTT 1436 consensus_15612#2 AATATGAAAGAATGAAGGAATATGATTCTTACATAATTTGATTGGA-------------- 718 consensus_15612#1 AATATGAAAGAATAAAGGAATATGATTCTTACATAATTTGATTGGAA-CATAAAAAAAAA 797 ************* ********************** * * consensus_15612#0 TCAGCTCCTTGCAATAGCTAATTTTAGGCTTACATTTGATCTTTTGTTTC 1486 consensus_15612#2 -------------------------------------------------- consensus_15612#1 AAAAAAAA------------------------------------------ 805 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||