These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 2572 fasta sequence [AGGGCTCGTATTTGGCAGCAATGCTGTGATTACGAATGGACGGGTATTTGTTGTAAATGAAGGAGATTCATTTCTAACTGATGATTTAGGCCTGCTTGAGTCTATGGAGTACGAATTGAGAACAAAACACATTTATGAAATAATTGAAGAGATCGAATGGACAGGTGTCGACCCT-GATGACCTGACAAGCAAATTCTACAGCGATGTCGCCATGTTGATTTCATCATCAATGTCTATTCGTGAAAGGCCATCCGAAAGAGCCCATTTTGAAATTTTGCATGCAGAGCACAGTGCTATTAAACTGAACGGTATGAGTTCAGGTGTTCATATCGATGCTGTCATTGACCCACTAAGTCCTGCTGGGCAAAAACTTGCTCCACTC-TTACGCATTCTCTGGAGACAGATTCAGCCGAGCATGAGAATTGTTCTGAATCCTATTAGTTCTCTTGCGGATCTACCTTTAAAGAACTATTATAGATTTGTTCTTCCATCAATGGACGATTTTAGCAGTACCGATTATTCTGTGCATGGACCTAAAGCTTTCTTCGCAAATATGCCACTATCGAAAACACTTACGATGAACATTGATGTCCCTGAACCATGGCTTGTTGAACCTGTCATTGCCATCCATGATCTGGACAACATTTTATTGGAGAATCTCGGTGATGTTAGAACATTGCAGGCAGTGTTTGAACTTGAAGCACTCCTCTTGACAGGCCATTGCAAGGAAAAGGATAGAGACCCTCCCAGGGGTCTTCAGTTTATCCTTGGTACCAAACGAAGACCACACTTGGTAGATACGCTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTTTCCCCTGGTGTATGGTACCTACAATTAGCGCCTGGTCGTAGTGCAGATTTGTATG-AGCTACCTTCAAAACTCATTGCCATTGATAGCTTGAGGGGCAAACTTATGCACATTGAAGTTCAAAAGAGAGGAGGAAAAGAGCACGAGGAC-TTGCTAAATGC-TGATGATGACAACCAC-TTCCAGGAAAAGATGGATAACAAAGGC-TGGAATAACAACC-TTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTGACCTTAAAGCTGCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACAAAGACCTGTGAAATTCTGGTTCATAAAGAACTATCTATCTCCACAGTTCAAGGATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTCACATATAAATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGAGGAAGGTTATTTTTGTTGACGCAGATCAAATTGTGAGAGCAGACATGGGAGAACTGTATGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC-AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC-AAGAATGGCTATGG-TGTG-AATCTTGGTGTGGAAATGCCAC-AAAGGCAA-GAGCAAAA-ACCA-TTGATC-TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC-GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAAAAAAAGAAGTTTGTGTATTTGATACGTGGAAATTTGATGCTCATTTTTCTAAGATAGGAATTTCGAAAGACGCACCAGAAAAAGGGCGTTGCAGAGTTT] [+] EMBL CB672578 [AGGGCTCGTATTTGGCAGCAATGCTGTGATTACGAATGGACGGGTATTTGTTGTAAATGAAGGAGATTCATTTCTAACTGATGATTTAGGCCTGCTTGAGTCTATGGAGTACGAATTGAGAACAAAACACATTTATGAAATAATTGAAGAGATCGAATGGACAGGTGTCGACCCT GATGACCTGACAAGCAAATTCTACAGCGATGTCGCCATGTTGATTTCATCATCAATGTCTATTCGTGAAAGGCCATCCGAAAGAGCCCATTTTGAAATTTTGCATGCAGAGCACAGTGCTATTAAACTGAACGGTATGAGTTCAGGTGTTCATATCGATGCTGTCATTGACCCACTAAGTCCTGCTGGGCAAAAACTTGCTCCACTC TTACGCATTCTCTGGAGACAGATTCAGCCGAGCATGAGAATTGTTCTGAATCCTATTAGTTCTCTTGCGGATCTACCTTTAAAGAACTATTATAGATTTGTTCTTCCATCAATGGACGATTTTAGCAGTACCGATTATTCTGTGCATGGACCTAAAGCTTTCTTCGCAAATATGCCACTATCGAAAACACTTACGATGAACATTGATGTCCCTGAACCATGGCTTGTTGAACCTGTCATTGCCATCCATGATCTGGACAACATTTTATTGGAGAATCTCGGTGATGTTAGAACATTGCAGGCAGTGTTTGAACTTGAAGCACTCCTCTTGACAGGCCATTGCAAGGAAAAGGATAGAGACCCTCCCAGGGGTCTTCAGTTTATCCTTGGTACCAAACG AGAACACACTTGGTAGATACGCTTGTCATGGCCAACT ] [+] EMBL CB634324 [ GGGCTTGAATTTGGCAGCAATGCTGTGATTACGAATGGACGGGTATTTGTTGTAAATGAAGGAGATTCATTTCTAACTGATGATTTAGGCTTGCTTGAGTCTATGGAGTACGAATTGAGAACAAAACACATTTATGAAATAATTGAAGAGATCGAATGGACAGGTGTCGACCCT GATGACCTGACAAGCAAATTCTACAGCGATGTCGCCATGTTGATTTCATCATCAATGTCTATTCGTGAAAGGCCATCCGAAAGAGCCCATTTTGAAATTTTGCATGCAGAGCACAGTGCTATTAAACTGAACGGTATGAGTTCAGGTGTTCATATCGATGCTGTCATTGACCCACTAAGTCCTGCTGGGCAAAAACTTGCTCCACTC TTACGCATTCTCTGGAGACAGATTCAGCCGAGCATGAGAATTGTTCTGAATCCTATTAGTTCTCTTGCGGATCTACCTTTAAAGAACTATTATAGATTTGTTCTTCCATCAATGGACGATTTTAGCAGTACCGATTATTCTGTGCATGGACCTAAAGCTTTCTTCGCAAATATGCCACTATCGAAAACACTTACGATGAACATTGATGTCCCTGAACCATGGCTTGTTGAACCTGTCATTGCCATCCATGATCTGGACAACATTTTATTGGAGAATCTCGGTGATGTTAGAACATTGCAGGCAGTGTTTGAACTTGAAGCACTCCTCTTGACAGGCCATTGCAAGGAAAAGGATAGAGACCCTCCCAGGGGTCTTCAGTTTATCCTTGGTA CAAACGAAGAACACACTTGGTAGATACGCTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTTT CCCTGGT ] [+] EMBL AU070244 [ TTTAGGCCTGCTTGAGTCTATGGAGTACGAATTGAGAACAAAACACATTTATGAAATAATTGAAGAGATCGAATGGACAGGTGTCGACCCTGGATGACCTGACAAGCAAATTCTACAGCGATGTCGCCATGTTGATTTCATCATCAATGTCTATTCGTGAAAGGCCATCCGAAAGAGCCCATTTTGAAATTTTGCATGCAGAGCACAGTGCTATTAAACTGAACGGTATGAGTTCAAGTGTTCANATCGATGCTGTCATTGACCCACTAAGTCCTGCTGGGCAAAAAC TGCTCCACTCTTTACGCATTCTCTGGAGACAGATTCAGNCGAGCATGAGAAATGNTCTGga ] [+] EMBL CB629555 [ GGAGAATCTCGGTGATGTTAGAACATTGCAGGCAGTGTTTGAACTTGAAGCACTCCTCTTGACAGGCCATTGCAAGGAAAAGGATAGAGACCCTCCCAGGGGTCTTCAGTTTATCCTTGGTACCAAACGAAGACCACACTTGGTAGATACGCTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTTTCCCCTGGTGTATGGTACCTACAATTAGCGCCTGGTCGTAGTGCAGTTTTGAAGGTAGCT CATACAAATCTCATTGCCATTGATAGCTTGAGGGGCAAACTTATGCACATTGAAGTGCAAAAGAGAGGAGGAAAAGAGCACGAGGAC TTGCTAAATGC TGATGATGACAACCAC TTCCAGGAAAAGATGGATAACAAAGGC TGGAATAACAACC TTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTGACCTTAAAGCTGCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACAAAGACCTGTGAAATTCTGGTTCATAAAGAACTATCTATCTCCACAGTTCAAGGATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTCACATATAAATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGANGAAGGTTATTTTTGTTGACGCAGA ] [+] EMBL AU032095 [ AGTGTTTGAACTTGAAGCACTCCTCTTGACAGGCCATTGCAAGGAAAAGGATAGAGACCCTCCCAGGGGTCTTCAGTTTATCCTTGGTACCAAACGAAGACCACACTTGGTAGATACGCTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTTTCCCCTGGTGTATGGTACCTACAATTAGCGCCTGGTCGTAGTGCAGATTTGTATG AGCTACCTTCAAAACTCATTGCCATTGATAGCTTGAGGGGCAAACTTATGCACATTGAAGTTCAAAAGAGAGGAGGAAAAGAGCACGAGGACTTTGCTAAATGCTTGATGATGACAACCACTTTCCAGGGAAAGATGGATAACAAAGGCTTGGATTAACAACCTTTTTGAAGTGGGCTTCTAGTTTCATTAGTNGCGACTCATCATCAAAAAAGAAGGTTGNGAAAATCTCT ] [+] EMBL CF322901 [ TCAGTTTATCCTTGGTACCAAACGAAGACCACACTTGGTAGATACGCTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTTTCCCCTGGTGTATGGTACCTACAATTAGCGCCTGGTCGTAGTGCAGATTTGTATG AGCTACCTTCAAAACTCATTGCCATTGATAGCTTGAGGGGCAAACTTATGCACATTGAAGTTCAAAAGAGAGGAGGAAAAGAGCACGAGGAC TTGCTAAATGC TGATGATGACAACCAC TTCCAGGAAAAGATGGATAACAAAGGC TGGAATAACAACC TTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTGACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACAAAGACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGGATGTCATACCCCATATGGCCCAGGAATATGGATNTGAGTACGAGCTTGTCACATATAAATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTAT ] [+] EMBL OSR28111A [ gGGATTTGAGTACGAGCTTGTCACATATAAATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGAGGAAGGTTATTTTTGTTGACGCAGATCAAATTGTGAGAGCAGACATGGGAGAACTGTATGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTT ] [+] EMBL AK059298 [ ACATATAAATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGAGGAAGGTTATTTTTGTTGACGCAGATCAAATTGTGAGAGCAGACATGGGAGAACTGTATGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC AAGAATGGCTATGG TGTG AATCTTGGTGTGGAAATGCCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTG ] [+] EMBL CF196921 [ TCTAGATGTCATATTTCCACTTTCACTGAGGAAGGTTATTTTTGTTGACGCAGATCAAATTGTGAGAGCAGACATGGGAGAACTGTATGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC AAGAATGGCTATGG TGTG AATCTTGGTGTGGAAATGCCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTNNNNNNNGCCAAAAGAATTGTTCNNNNNNNGGTTGATCTTGACnnnnnnn ] [+] EMBL OSR17151A [ TCTGCGATAACAACAAGGAGNTGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGNTACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCCAAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAAGNATGGCTATGGNTGTGAAATCTTGGTGTGGGAATGCCACAAAAGGNAAGGAGCAAAANCCCATTTGATCTTTTGCAACc ] [+] EMBL OSR18571A [ TCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC AAGAATGGCTATGG TGTG AATCTTGGTGTGGAAATGCCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGA ] [+] EMBL CA767112 [ GAAAGATCATCTGCGAGGAAGACCATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC AAGAATGGCTATGG TGTG AATCTTGGTGTGGAAATGCCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCC ] [-] EMBL CB634325 [ CGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC AAGAATGGCTATGG TGTG AATCTTGGTGTGGAAATGCCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCACATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTGGGGAATGTTAGATACTTTGGTGTTGGTATTCCAAAAATAAAGA ] [-] EMBL CB629556 [ CGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCC AAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTC AAGAATGGCTATGG TGTG AATCTTGGTGTGGAAATGCCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCACATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTGGGCACCCAACAAAGCTCGAGAATGTTAGATcca ] [-] EMBL CB646334 [ CCAC AAAGGCAA GAGCAAAA ACCA TTGATC TTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAACATTTGTAGTTTGTGTATTTGATACGTGGAAATTTGATGCTCATTTTTCTAAGATAGGAATTTCGAAAGACGCACCAGAAAAAGGGCGTTGCAGAGTTT] [+] EMBL AU184254 [ GCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAAAAA ] [+] EMBL AU095515 [ CGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAAA ] [+] EMBL AU173243 [ TGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCC GAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAAAAA ] [+] EMBL AU173209 [ ATGAAGTGCAGATACCATAATGTGCGAATCAATNGATGATCAATAATCAATGGTGGNGCCATTTTGCATTTTGTAGGGCTAACTGCCGGAAAATAGGTTCACNAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATNCCAATTNGTGTANTAAGATGTTCTTCCTGGGACGCTGTANAGTTTATTGGCANCTGCCAGTTGAAAGCTAGTATTAGCAATNTGGCANCCCNANAATTTTGTAAAAGNTGGCACCCAANAAAGCTCGAGAATGTAANATNCTTTGGTGTTGGTATTNCAAAAAAA ] consensusID : consensus_15619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1073 fasta sequence [AAGGGATTCAACGATAATGGTCCCGGTTTCCATCAACTTAAACCGGCAGAGCGGGAAAACCCCATAGGGATGGGACGGCCCCTAAACACAGGAAAATGATGCATATTTAAGTGCCCCTGGGAACCCATCTCATAACACAAGAAAGGATGCCACGATTTGAAGCAGGTTTGGAAAGTCTCTCAAGGAAGCCAACCACAACAGTCTCTTATGTTGTGAATGGCCAATTTCGCAAACTGCTCTGGAATACTCTACGGGTCTTCTATGAACACTCACAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCCAAATTATGCTCAGCATACTGTGCCCATA-TCTCTCTCCCTCAAGAATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCACATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCCG-AAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAGGCATTTGTAGTTTGTGTAAAAAAAAAAAAAAAACTTAAAAGA] [-] EMBL BE039601 [AAGGGATTCAACGATAATGGTCCCGGTTTCCATCAACTTAAACCGGCAGAGCGGGAAAACCCCATAGGGATGGGACGGCCCCTAAACACAGGAAAATGATGCATATTTAAGTGCCCCTGGGAACCCATCTCATAACACAAGAAAGGATGCCACGATTTGAAGCAGGTTTGGAAAGTCTCTCAAGGAAGCCAACCACAACAGTCTCTTATGTTGTGAATGGCCAATTTCGCAAACTGCTCTGGAATACTCTACGGGTCTTCTATGAACACTCACAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCCAAATTATGCTCAGCATACTGTGCCCATA TCTCTCTCCCTCAAGAATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCACATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCCG AAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCT ] [-] EMBL CB672579 [ GCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAGAATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATTTGATACACCAAAGTCAGATGATAAAGGCGCAAAACATGATGAGCTATGATACCCCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTTTTTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAAGTGCAGATACCATAATGTGGGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTTGCATTTTGTAGGGCTAACTGCCG AAAATAGGTTCACGAAGGGGTTTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTTTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATTTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGTTGGTATTCCAAAGGCATTTGTAGTTTGTGTAAAAAAAAAAAAAAAACTTAAAAGA] [+] EMBL AA750622 [ AAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAATCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGAT AAGGC AAACATGATGAG TATGATACA CAGCCGCTTTGGAGGCAAGG TT TTCACACTGACTGTAGTTCTCTG ] [+] EMBL BI809228 [ GGCTAACTGCCGAAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTTAGATACTTTGGTGTTGGTATTCCAAAAACATTTGTAGTTTGTGTAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15619#0 AGGGCTCGTATTTGGCAGCAATGCTGTGATTACGAATGGACGGGTATTTGTTGTAAATGA 60 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 AGGAGATTCATTTCTAACTGATGATTTAGGCCTGCTTGAGTCTATGGAGTACGAATTGAG 120 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 AACAAAACACATTTATGAAATAATTGAAGAGATCGAATGGACAGGTGTCGACCCTGATGA 180 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 CCTGACAAGCAAATTCTACAGCGATGTCGCCATGTTGATTTCATCATCAATGTCTATTCG 240 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TGAAAGGCCATCCGAAAGAGCCCATTTTGAAATTTTGCATGCAGAGCACAGTGCTATTAA 300 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 ACTGAACGGTATGAGTTCAGGTGTTCATATCGATGCTGTCATTGACCCACTAAGTCCTGC 360 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TGGGCAAAAACTTGCTCCACTCTTACGCATTCTCTGGAGACAGATTCAGCCGAGCATGAG 420 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 AATTGTTCTGAATCCTATTAGTTCTCTTGCGGATCTACCTTTAAAGAACTATTATAGATT 480 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TGTTCTTCCATCAATGGACGATTTTAGCAGTACCGATTATTCTGTGCATGGACCTAAAGC 540 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TTTCTTCGCAAATATGCCACTATCGAAAACACTTACGATGAACATTGATGTCCCTGAACC 600 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 ATGGCTTGTTGAACCTGTCATTGCCATCCATGATCTGGACAACATTTTATTGGAGAATCT 660 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 CGGTGATGTTAGAACATTGCAGGCAGTGTTTGAACTTGAAGCACTCCTCTTGACAGGCCA 720 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TTGCAAGGAAAAGGATAGAGACCCTCCCAGGGGTCTTCAGTTTATCCTTGGTACCAAACG 780 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 AAGACCACACTTGGTAGATACGCTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGT 840 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TTCCCCTGGTGTATGGTACCTACAATTAGCGCCTGGTCGTAGTGCAGATTTGTATGAGCT 900 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 ACCTTCAAAACTCATTGCCATTGATAGCTTGAGGGGCAAACTTATGCACATTGAAGTTCA 960 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 AAAGAGAGGAGGAAAAGAGCACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCA 1020 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 GGAAAAGATGGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCAT 1080 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 TAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCTGACCTTAAAGCTGCAAG 1140 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 ACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTGTATGAACGTTTCCT 1200 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 CAAGATAATGATTTTGAGTGTATTAAAGCAAACACAAAGACCTGTGAAATTCTGGTTCAT 1260 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 AAAGAACTATCTATCTCCACAGTTCAAGGATGTCATACCCCATATGGCCCAGGAATATGG 1320 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 ATTTGAGTACGAGCTTGTCACATATAAATGGCCAACATGGTTGCACAAACAGAAAGAGAA 1380 consensus_15619#1 ------------------------------------------------------------ consensus_15619#0 GCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACT 1440 consensus_15619#1 ------------AAGGGATTCAACGATAATGGTCCCGGTTTCCATCAACTTAAACCGGCA 48 * *** * * *** ** * * * * *** * * consensus_15619#0 GAGGAAGGTTATTTTTGTTGACGCAGATCAAATTGTGAGAGCAGACATGGGAGAACTGTA 1500 consensus_15619#1 GAGCG-GGAAAACCCCATAGGGATGGGACGGCCCCTAA------ACACAGGAAAA----- 96 *** ** * * * * * * * *** *** ** consensus_15619#0 TGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGA 1560 consensus_15619#1 TGATGCATATTTAA------GTGCCCCTGGG---AACCCATCTC---ATAACA-CAAGAA 143 *** ** * * ** *** ** * * **** ****** **** * consensus_15619#0 GATGGATGGCTATCGATTTTGGAAGCAAGGTTTCTGGAAAGATCATCTGCGAGGAAGACC 1620 consensus_15619#1 A--GGATGCCA--CGATTT--GAAGCAGG---TTTGGAAAG----TCTCTCAAGGAAGCC 190 ***** * ****** ****** * * ******* *** * * * ** consensus_15619#0 ATACCACATCAGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGG 1680 consensus_15619#1 A-ACCACAACAGT--CTCTTATGTTGTGAA--TGGCCAA--TTTCGCAAACTGCT-CTGG 242 * ****** **** ********* * ******* ** ********** **** consensus_15619#0 AGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCT 1740 consensus_15619#1 A-ATACTCTACGGGTCTTCTATGAA-CACTCA-CAAAGACCCCAATAGTCTCTCAAATCT 299 * *********************** ****** *************************** consensus_15619#0 TGATCAGGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAGA 1800 consensus_15619#1 TGATCAGGATCTCCCAAATTATGCTCAGCATACTGTGCCCATAT-CTCTCTCCCTCAAGA 358 ******************************************** *************** consensus_15619#0 ATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGA 1860 consensus_15619#1 ATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGA 418 ************************************************************ consensus_15619#0 TCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCC 1920 consensus_15619#1 TCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCC 478 ************************************************************ consensus_15619#0 AGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAA 1980 consensus_15619#1 AGAGTGGGTTGATCTTGACAGTGAAGCAAGGCAGTTCACAGCACGAATCTTGGGAGATAA 538 ************************************************************ consensus_15619#0 TCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGG 2040 consensus_15619#1 TCCGGAGTCACCAGGAACTACTTCCCCGCCATCTGATACACCAAAGTCAGATGATAAAGG 598 ************************************************************ consensus_15619#0 CGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTG 2100 consensus_15619#1 CGCAAAACATGATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTG 658 ************************************************************ consensus_15619#0 ACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAA 2160 consensus_15619#1 ACTGTAGTTCTCTGGTGTCCCAGCAGTTAAAATCATATTGCTGGTTCAGGGGGCAATGAA 718 ************************************************************ consensus_15619#0 GTGCAGATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTT 2220 consensus_15619#1 GTGCACATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGGTGCCATTTT 778 ***** ****************************************************** consensus_15619#0 GCATTTTGTAGGGCTAACTGCCGAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTT 2280 consensus_15619#1 GCATTTTGTAGGGCTAACTGCCGAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTT 838 ************************************************************ consensus_15619#0 CAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTG 2340 consensus_15619#1 CAAGAACTTGTATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTG 898 ************************************************************ consensus_15619#0 GGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGC 2400 consensus_15619#1 GGACGCTGTAAAGTTTATTGGCAACTGCCAGTTGAAAGCTAGTATTAGCAATCTGGCAGC 958 ************************************************************ consensus_15619#0 CCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGT 2460 consensus_15619#1 CCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTAAGATACTTTGGTGT 1018 ************************************************************ consensus_15619#0 TGGTATTCCAAAAAAAAA-GAAGTTTGTGTATTTGATACGTGGAAATTTGATGCTCATTT 2519 consensus_15619#1 TGGTATTCCAAAGGCATTTGTAGTTTGTGTAAAAAAAAAAAAAAAACTTAAAAGA----- 1073 ************ * * ********** * * *** ** * consensus_15619#0 TTCTAAGATAGGAATTTCGAAAGACGCACCAGAAAAAGGGCGTTGCAGAGTTT 2572 consensus_15619#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||